Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:100136278-101026734

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ror1 4 100095791 to 100444765 348974 + protein coding gene receptor tyrosine kinase-like orphan receptor 1
Tssr37959 4 100145075 to 100145081 6 + TSS region transcription start site region 37959
Tssr37960 4 100160125 to 100160129 4 + TSS region transcription start site region 37960
Tssr37961 4 100227730 to 100227731 1 + TSS region transcription start site region 37961
Tssr37962 4 100305654 to 100305659 5 + TSS region transcription start site region 37962
Tssr37963 4 100336858 to 100336861 3 + TSS region transcription start site region 37963
Gm12706 4 100361362 to 100362059 697 - pseudogene predicted gene 12706
Gm35760 4 100376583 to 100393210 16627 - lncRNA gene predicted gene, 35760
D4Mit175 4 100399497 to 100399607 110 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 175
Cpgi14493 4 100441519 to 100442023 504 CpG island CpG island 14493
Gm18288 4 100465875 to 100467142 1267 + pseudogene predicted gene, 18288
Tssr37964 4 100478795 to 100478802 7 + TSS region transcription start site region 37964
Tssr37965 4 100478806 to 100478872 66 + TSS region transcription start site region 37965
Ube2u 4 100478867 to 100550145 71278 + protein coding gene ubiquitin-conjugating enzyme E2U (putative)
Tssr37966 4 100479128 to 100479146 18 + TSS region transcription start site region 37966
Tssr37967 4 100479150 to 100479170 20 + TSS region transcription start site region 37967
Tssr37968 4 100479176 to 100479181 5 + TSS region transcription start site region 37968
Ube2uos 4 100523247 to 100527801 4554 - antisense lncRNA gene ubiquitin-conjugating enzyme E2U (putative), opposite strand
Ccdc50-ps 4 100567108 to 100568048 940 - pseudogene Ccdc50 retrotransposed pseudogene
Cpgi14494 4 100567995 to 100568185 190 CpG island CpG island 14494
Tssr42540 4 100568004 to 100568037 33 - TSS region transcription start site region 42540
Gm12700 4 100581278 to 100581734 456 + pseudogene predicted gene 12700
Gm46888 4 100687671 to 100689010 1339 - lncRNA gene predicted gene, 46888
D4Mit119 4 100747673 to 100747809 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 119
Idd11 4 100747673 to 100747809 136 QTL insulin dependent diabetes susceptibility 11
Cpgi14495 4 100776214 to 100777976 1762 CpG island CpG island 14495
Tssr37969 4 100776641 to 100776656 15 + TSS region transcription start site region 37969
Tssr37970 4 100776664 to 100776692 28 + TSS region transcription start site region 37970
Cachd1 4 100776679 to 101003749 227070 + protein coding gene cache domain containing 1
Tssr37971 4 100776704 to 100776721 17 + TSS region transcription start site region 37971
Tssr1239 4 100776764 to 100776779 15 + TSS region transcription start site region 1239
Tssr37972 4 100776794 to 100776806 12 + TSS region transcription start site region 37972
Tssr37973 4 100819286 to 100819307 21 + TSS region transcription start site region 37973
Tssr37974 4 100819434 to 100819459 25 + TSS region transcription start site region 37974
Tssr1240 4 100861411 to 100861418 7 + TSS region transcription start site region 1240
Tssr37975 4 100911491 to 100911501 10 + TSS region transcription start site region 37975
Tssr37976 4 100994606 to 100994633 27 + TSS region transcription start site region 37976
D4Mit304 4 101001053 to 101001169 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 304
Tssr37977 4 101002976 to 101003006 30 + TSS region transcription start site region 37977
Gm10577 4 101020298 to 101020696 398 - protein coding gene predicted gene 10577