Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:99528322-100488323

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12448 3 99544408 to 99545062 654 - pseudogene predicted gene 12448
Gm22505 3 99707740 to 99707847 107 - snRNA gene predicted gene, 22505
D3Mit283 3 99755175 to 99755321 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 283
D3Jpk1 3 99798719 to 99798982 263 DNA segment DNA segment, Chr 3, Japan, Kominami 1
Tssr30866 3 99885383 to 99885419 36 + TSS region transcription start site region 30866
Tssr30867 3 99885425 to 99885439 14 + TSS region transcription start site region 30867
Tssr30868 3 99885448 to 99885488 40 + TSS region transcription start site region 30868
Tssr30869 3 99968920 to 99968923 3 + TSS region transcription start site region 30869
Tssr30870 3 99981265 to 99981303 38 + TSS region transcription start site region 30870
Tssr30871 3 99981316 to 99981338 22 + TSS region transcription start site region 30871
Tssr34740 3 99981317 to 99981327 10 - TSS region transcription start site region 34740
Tssr30872 3 100008322 to 100008323 1 + TSS region transcription start site region 30872
Rpl36-ps7 3 100008360 to 100008674 314 + pseudogene ribosomal protein L36, pseudogene 7
Tra2b-ps 3 100078477 to 100078644 167 - pseudogene transformer 2 beta, pseudogene
Spag17os 3 100100684 to 100106895 6211 - antisense lncRNA gene sperm associated antigen 17, opposite strand
Wdr3 3 100138180 to 100162403 24223 - protein coding gene WD repeat domain 3
Tssr34741 3 100141713 to 100141725 12 - TSS region transcription start site region 34741
Spag17 3 100143322 to 99885417 -257905 + protein coding gene sperm associated antigen 17
Cpgi13613 3 100161983 to 100162988 1005 CpG island CpG island 13613
Tssr34742 3 100162364 to 100162414 50 - TSS region transcription start site region 34742
Tssr30873 3 100162454 to 100162536 82 + TSS region transcription start site region 30873
Gdap2 3 100162463 to 100206989 44526 + protein coding gene ganglioside-induced differentiation-associated-protein 2
Tssr30874 3 100162554 to 100162565 11 + TSS region transcription start site region 30874
Gm25802 3 100303288 to 100303364 76 + snoRNA gene predicted gene, 25802
Tssr34743 3 100365778 to 100365783 5 - TSS region transcription start site region 34743
Gm12464 3 100413560 to 100414575 1015 + pseudogene predicted gene 12464
Gm32471 3 100418082 to 100422416 4334 + lncRNA gene predicted gene, 32471
4930406D18Rik 3 100426405 to 100437754 11349 + lncRNA gene RIKEN cDNA 4930406D18 gene
Tssr30875 3 100426433 to 100426457 24 + TSS region transcription start site region 30875
Tssr30876 3 100436977 to 100436981 4 + TSS region transcription start site region 30876
Gm43121 3 100437834 to 100439138 1304 + lincRNA gene predicted gene 43121
Tssr30877 3 100439346 to 100439387 41 + TSS region transcription start site region 30877
Gm38530 3 100451809 to 100459575 7766 - lncRNA gene predicted gene, 38530
Ap6q 3 100465596 to 147339967 46874371 QTL alcohol preference 6 QTL
D3Mit12 3 100465596 to 100465744 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 12
Nctm1 3 100465744 to 97791322 -2674422 QTL Nakano cataract modifier 1
Tent5c 3 100468057 to 100489192 21135 - protein coding gene terminal nucleotidyltransferase 5C
Tssr34744 3 100472598 to 100472617 19 - TSS region transcription start site region 34744
Tssr34745 3 100476440 to 100476445 5 - TSS region transcription start site region 34745
Tssr34746 3 100483635 to 100483637 2 - TSS region transcription start site region 34746
Tssr34747 3 100487941 to 100487975 34 - TSS region transcription start site region 34747
Cpgi13614 3 100488231 to 100490043 1812 CpG island CpG island 13614