Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
M6pr-ps | 3 | 829 | + | pseudogene | mannose-6-phosphate receptor, pseudogene | |
Gm12448 | 3 | 654 | - | pseudogene | predicted gene 12448 | |
Gm22505 | 3 | 107 | - | snRNA gene | predicted gene, 22505 | |
D3Mit283 | 3 | 146 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 283 | ||
D3Jpk1 | 3 | 263 | DNA segment | DNA segment, Chr 3, Japan, Kominami 1 | ||
Tssr30866 | 3 | 36 | + | TSS region | transcription start site region 30866 | |
Tssr30867 | 3 | 14 | + | TSS region | transcription start site region 30867 | |
Tssr30868 | 3 | 40 | + | TSS region | transcription start site region 30868 | |
Tssr30869 | 3 | 3 | + | TSS region | transcription start site region 30869 | |
Tssr30870 | 3 | 38 | + | TSS region | transcription start site region 30870 | |
Tssr30871 | 3 | 22 | + | TSS region | transcription start site region 30871 | |
Tssr34740 | 3 | 10 | - | TSS region | transcription start site region 34740 | |
Tssr30872 | 3 | 1 | + | TSS region | transcription start site region 30872 | |
Rpl36-ps7 | 3 | 314 | + | pseudogene | ribosomal protein L36, pseudogene 7 | |
Tra2b-ps | 3 | 167 | - | pseudogene | transformer 2 beta, pseudogene | |
Spag17os | 3 | 6211 | - | antisense lncRNA gene | sperm associated antigen 17, opposite strand | |
Wdr3 | 3 | 24223 | - | protein coding gene | WD repeat domain 3 | |
Tssr34741 | 3 | 12 | - | TSS region | transcription start site region 34741 | |
Spag17 | 3 | -257905 | + | protein coding gene | sperm associated antigen 17 | |
Cpgi13613 | 3 | 1005 | CpG island | CpG island 13613 | ||
Tssr34742 | 3 | 50 | - | TSS region | transcription start site region 34742 | |
Tssr30873 | 3 | 82 | + | TSS region | transcription start site region 30873 | |
Gdap2 | 3 | 44526 | + | protein coding gene | ganglioside-induced differentiation-associated-protein 2 | |
Tssr30874 | 3 | 11 | + | TSS region | transcription start site region 30874 | |
Gm25802 | 3 | 76 | + | snoRNA gene | predicted gene, 25802 | |
Tssr34743 | 3 | 5 | - | TSS region | transcription start site region 34743 | |
Gm12464 | 3 | 1015 | + | pseudogene | predicted gene 12464 | |
Gm32471 | 3 | 4334 | + | lncRNA gene | predicted gene, 32471 | |
4930406D18Rik | 3 | 11349 | + | lncRNA gene | RIKEN cDNA 4930406D18 gene | |
Tssr30875 | 3 | 24 | + | TSS region | transcription start site region 30875 | |
Tssr30876 | 3 | 4 | + | TSS region | transcription start site region 30876 | |
Gm43121 | 3 | 1304 | + | lincRNA gene | predicted gene 43121 | |
Tssr30877 | 3 | 41 | + | TSS region | transcription start site region 30877 | |
Gm38530 | 3 | 7766 | - | lncRNA gene | predicted gene, 38530 | |
Ap6q | 3 | 46874371 | QTL | alcohol preference 6 QTL | ||
D3Mit12 | 3 | 148 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 12 | ||
Nctm1 | 3 | -2674422 | QTL | Nakano cataract modifier 1 | ||
Tent5c | 3 | 21135 | - | protein coding gene | terminal nucleotidyltransferase 5C | |
Tssr34744 | 3 | 19 | - | TSS region | transcription start site region 34744 | |
Tssr34745 | 3 | 5 | - | TSS region | transcription start site region 34745 | |
Tssr34746 | 3 | 2 | - | TSS region | transcription start site region 34746 | |
Tssr34747 | 3 | 34 | - | TSS region | transcription start site region 34747 | |
Cpgi13614 | 3 | 1812 | CpG island | CpG island 13614 | ||
Tssr34748 | 3 | 52 | - | TSS region | transcription start site region 34748 | |
Tssr34749 | 3 | 14 | - | TSS region | transcription start site region 34749 | |
Tssr34750 | 3 | 22 | - | TSS region | transcription start site region 34750 | |
Tssr34751 | 3 | 25 | - | TSS region | transcription start site region 34751 | |
Tssr983 | 3 | 9 | - | TSS region | transcription start site region 983 | |
Tssr984 | 3 | 5 | - | TSS region | transcription start site region 984 | |
Tssr30878 | 3 | 33 | + | TSS region | transcription start site region 30878 | |
Tssr30879 | 3 | 52 | + | TSS region | transcription start site region 30879 | |
Gm12474 | 3 | 34256 | + | lincRNA gene | predicted gene 12474 | |
Gm40106 | 3 | 45990 | - | lncRNA gene | predicted gene, 40106 | |
Gm42868 | 3 | 2696 | + | sense intronic lncRNA gene | predicted gene 42868 | |
tnyw | 3 | 21152164 | heritable phenotypic marker | tiny wasting | ||
D3Mit11 | 3 | 146 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 11 | ||
Lmr11a | 3 | 146 | QTL | leishmaniasis resistance 11a | ||
Ltpr3g | 3 | 146 | QTL | Leishmania tropica response 3g | ||
Ltpr3b | 3 | 146 | QTL | Leishmania tropica response 3b | ||
Ltpr3c | 3 | 146 | QTL | Leishmania tropica response 3c | ||
Ltpr3d | 3 | 146 | QTL | Leishmania tropica response 3d | ||
Ltpr3e | 3 | 146 | QTL | Leishmania tropica response 3e | ||
Ltpr3f | 3 | 146 | QTL | Leishmania tropica response 3f | ||
Ltpr3 | 3 | -43760140 | QTL | Leishmania tropica response 3 | ||
Rapop3 | 3 | -9952911 | QTL | radiation-induced apoptosis 3 | ||
Man1a2 | 3 | 123270 | - | protein coding gene | mannosidase, alpha, class 1A, member 2 | |
Gm43466 | 3 | 5213 | - | sense intronic lncRNA gene | predicted gene 43466 | |
Gm42869 | 3 | 2120 | - | sense intronic lncRNA gene | predicted gene 42869 | |
Gm43462 | 3 | 3647 | - | sense intronic lncRNA gene | predicted gene 43462 | |
Tssr34752 | 3 | 12 | - | TSS region | transcription start site region 34752 | |
Gm43463 | 3 | 1802 | - | sense intronic lncRNA gene | predicted gene 43463 | |
Gm12485 | 3 | 290 | + | pseudogene | predicted gene 12485 | |
Tssr34753 | 3 | 36 | - | TSS region | transcription start site region 34753 | |
Cpgi13615 | 3 | 1727 | CpG island | CpG island 13615 | ||
Tssr34754 | 3 | 13 | - | TSS region | transcription start site region 34754 | |
Tssr34755 | 3 | 4 | - | TSS region | transcription start site region 34755 | |
Tssr34756 | 3 | 63 | - | TSS region | transcription start site region 34756 | |
Tssr30880 | 3 | 71 | + | TSS region | transcription start site region 30880 | |
Tssr34757 | 3 | 18 | - | TSS region | transcription start site region 34757 | |
Tssr34758 | 3 | 94 | - | TSS region | transcription start site region 34758 | |
Tssr30881 | 3 | 29 | + | TSS region | transcription start site region 30881 | |
Gm43464 | 3 | 7378 | + | lincRNA gene | predicted gene 43464 | |
Gm23465 | 3 | 261 | - | unclassified non-coding RNA gene | predicted gene, 23465 | |
Cia5b | 3 | 3089595 | QTL | collagen induced arthritis QTL 5b | ||
D3Mit75 | 3 | 106 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 75 | ||
Char4 | 3 | -31029798 | QTL | P. chabaudi malaria resistance QTL 4 | ||
Tssr30882 | 3 | 32 | + | TSS region | transcription start site region 30882 | |
Gm40107 | 3 | 6214 | - | lncRNA gene | predicted gene, 40107 | |
Gm32720 | 3 | 6626 | - | lncRNA gene | predicted gene, 32720 | |
Tssr30883 | 3 | 15 | + | TSS region | transcription start site region 30883 | |
Vtcn1 | 3 | 71463 | + | protein coding gene | V-set domain containing T cell activation inhibitor 1 | |
Gm40108 | 3 | 6283 | + | lncRNA gene | predicted gene, 40108 | |
Tssr30884 | 3 | 8 | + | TSS region | transcription start site region 30884 | |
Tssr30885 | 3 | 10 | + | TSS region | transcription start site region 30885 | |
Cpgi13616 | 3 | 808 | CpG island | CpG island 13616 | ||
Tssr30886 | 3 | 37 | + | TSS region | transcription start site region 30886 | |
Tssr30887 | 3 | 17 | + | TSS region | transcription start site region 30887 | |
Trim45 | 3 | 14432 | + | protein coding gene | tripartite motif-containing 45 | |
Tssr30888 | 3 | 18 | + | TSS region | transcription start site region 30888 | |
Ttf2 | 3 | 30803 | - | protein coding gene | transcription termination factor, RNA polymerase II | |
Gm12488 | 3 | 498 | + | pseudogene | predicted gene 12488 | |
Cpgi13617 | 3 | 601 | CpG island | CpG island 13617 | ||
Tssr34759 | 3 | 32 | - | TSS region | transcription start site region 34759 | |
Tssr34760 | 3 | 5 | - | TSS region | transcription start site region 34760 | |
Cfsw1 | 3 | 132 | QTL | cystic fibrosis survival to weaning 1 | ||
D3Mit189 | 3 | 132 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 189 | ||
Cd101 | 3 | 35966 | - | protein coding gene | CD101 antigen | |
Tssr34761 | 3 | 35 | - | TSS region | transcription start site region 34761 | |
Tssr34762 | 3 | 19 | - | TSS region | transcription start site region 34762 | |
Tssr30889 | 3 | 34 | + | TSS region | transcription start site region 30889 | |
Tssr34763 | 3 | 17 | - | TSS region | transcription start site region 34763 | |
Tssr34764 | 3 | 11 | - | TSS region | transcription start site region 34764 | |
Tssr34765 | 3 | 14 | - | TSS region | transcription start site region 34765 | |
Tssr34766 | 3 | 9 | - | TSS region | transcription start site region 34766 | |
Tssr34767 | 3 | 9 | - | TSS region | transcription start site region 34767 | |
Tssr34768 | 3 | 15 | - | TSS region | transcription start site region 34768 | |
Ptgfrn | 3 | 70046 | - | protein coding gene | prostaglandin F2 receptor negative regulator | |
Tssr30890 | 3 | 5 | + | TSS region | transcription start site region 30890 | |
Gm43465 | 3 | 2801 | - | sense intronic lncRNA gene | predicted gene 43465 | |
Tssr34769 | 3 | 5 | - | TSS region | transcription start site region 34769 | |
Tssr34770 | 3 | 5 | - | TSS region | transcription start site region 34770 | |
Cpgi13618 | 3 | 1564 | CpG island | CpG island 13618 | ||
Tssr34771 | 3 | 14 | - | TSS region | transcription start site region 34771 | |
Tssr34772 | 3 | 13 | - | TSS region | transcription start site region 34772 | |
Tssr985 | 3 | 40 | - | TSS region | transcription start site region 985 | |
Tssr34773 | 3 | 95 | - | TSS region | transcription start site region 34773 | |
Tssr34774 | 3 | 35 | - | TSS region | transcription start site region 34774 | |
Tssr986 | 3 | 25 | + | TSS region | transcription start site region 986 | |
Tssr30891 | 3 | 16 | + | TSS region | transcription start site region 30891 | |
D3Mit342 | 3 | 112 | DNA segment | DNA Segment, Chr 3 Massachusetts Institute of Technology 342 | ||
Gm12486 | 3 | 540 | - | pseudogene | predicted gene 12486 | |
Tpt1-ps1 | 3 | 435 | + | pseudogene | tumor protein, translationally-controlled, pseudogene 1 | |
Tssr30892 | 3 | 8 | + | TSS region | transcription start site region 30892 | |
Tssr34775 | 3 | 3 | - | TSS region | transcription start site region 34775 | |
Gm12490 | 3 | 538 | + | pseudogene | predicted gene 12490 | |
Cd2 | 3 | 12031 | - | protein coding gene | CD2 antigen | |
Tssr34776 | 3 | 48 | - | TSS region | transcription start site region 34776 | |
Tssr34777 | 3 | 21 | - | TSS region | transcription start site region 34777 | |
Tssr30893 | 3 | 40 | + | TSS region | transcription start site region 30893 | |
Tssr34778 | 3 | 4 | - | TSS region | transcription start site region 34778 | |
Tssr34779 | 3 | 7 | - | TSS region | transcription start site region 34779 | |
Tssr30894 | 3 | 21 | + | TSS region | transcription start site region 30894 | |
Tssr30895 | 3 | 4 | + | TSS region | transcription start site region 30895 | |
Tssr30896 | 3 | 6 | + | TSS region | transcription start site region 30896 | |
Tssr30897 | 3 | 3 | + | TSS region | transcription start site region 30897 | |
Tssr34780 | 3 | 8 | - | TSS region | transcription start site region 34780 | |
Tssr34781 | 3 | 20 | - | TSS region | transcription start site region 34781 | |
Tssr34782 | 3 | 11 | - | TSS region | transcription start site region 34782 | |
Tssr34783 | 3 | 60 | - | TSS region | transcription start site region 34783 | |
Tssr34784 | 3 | 15 | - | TSS region | transcription start site region 34784 | |
Tssr34785 | 3 | 15 | - | TSS region | transcription start site region 34785 | |
Gm32803 | 3 | 5610 | - | lncRNA gene | predicted gene, 32803 | |
Tssr34786 | 3 | 11 | - | TSS region | transcription start site region 34786 | |
Tssr30898 | 3 | 25 | + | TSS region | transcription start site region 30898 | |
Tssr30899 | 3 | 13 | + | TSS region | transcription start site region 30899 | |
Tssr34787 | 3 | 9 | - | TSS region | transcription start site region 34787 | |
Tssr34788 | 3 | 5 | - | TSS region | transcription start site region 34788 | |
Gm10355 | 3 | 516 | - | pseudogene | predicted gene 10355 | |
Tssr30900 | 3 | 15 | + | TSS region | transcription start site region 30900 | |
Gm43467 | 3 | 436 | + | pseudogene | predicted gene 43467 | |
Gm32848 | 3 | 5379 | + | lncRNA gene | predicted gene, 32848 | |
Gm32900 | 3 | 14980 | - | lncRNA gene | predicted gene, 32900 | |
Cpgi13619 | 3 | 1477 | CpG island | CpG island 13619 | ||
Tssr30901 | 3 | 33 | + | TSS region | transcription start site region 30901 | |
Tssr30902 | 3 | 84 | + | TSS region | transcription start site region 30902 | |
Igsf3 | 3 | 85946 | + | protein coding gene | immunoglobulin superfamily, member 3 | |
D3Mit312 | 3 | 122 | DNA segment | DNA Segment, Chr 3, Massachusetts Institute of Technology 312 | ||
Gm42939 | 3 | 2204 | + | sense intronic lncRNA gene | predicted gene 42939 | |
Gm42938 | 3 | 1071 | + | sense intronic lncRNA gene | predicted gene 42938 | |
Tssr987 | 3 | 3 | + | TSS region | transcription start site region 987 | |
Gm42538 | 3 | 2321 | - | antisense lncRNA gene | predicted gene 42538 | |
Tssr34789 | 3 | 17 | - | TSS region | transcription start site region 34789 | |
Tssr30903 | 3 | 48 | + | TSS region | transcription start site region 30903 | |
Tssr988 | 3 | 4 | + | TSS region | transcription start site region 988 | |
Tssr30904 | 3 | 10 | + | TSS region | transcription start site region 30904 | |
Tssr30905 | 3 | 23 | + | TSS region | transcription start site region 30905 | |
Gm40109 | 3 | 5919 | - | lncRNA gene | predicted gene, 40109 | |
Gm33162 | 3 | 24695 | - | lncRNA gene | predicted gene, 33162 | |
Tssr30906 | 3 | 10 | + | TSS region | transcription start site region 30906 | |
Tssr34790 | 3 | 11 | - | TSS region | transcription start site region 34790 | |
Tssr34791 | 3 | 1 | - | TSS region | transcription start site region 34791 | |
Atp1a1 | 3 | 28465 | - | protein coding gene | ATPase, Na+/K+ transporting, alpha 1 polypeptide | |
Tssr34792 | 3 | 14 | - | TSS region | transcription start site region 34792 | |
Gm42937 | 3 | 751 | - | sense intronic lncRNA gene | predicted gene 42937 | |
Tssr34793 | 3 | 27 | - | TSS region | transcription start site region 34793 | |
Tssr34794 | 3 | 19 | - | TSS region | transcription start site region 34794 | |
Tssr34795 | 3 | 21 | - | TSS region | transcription start site region 34795 | |
Tssr30907 | 3 | 27 | + | TSS region | transcription start site region 30907 | |
Tssr34796 | 3 | 12 | - | TSS region | transcription start site region 34796 | |
Tssr34797 | 3 | 15 | - | TSS region | transcription start site region 34797 | |
Tssr34798 | 3 | 11 | - | TSS region | transcription start site region 34798 | |
Tssr34799 | 3 | 41 | - | TSS region | transcription start site region 34799 | |
Tssr34800 | 3 | 11 | - | TSS region | transcription start site region 34800 | |
Tssr34801 | 3 | 27 | - | TSS region | transcription start site region 34801 | |
Gm42941 | 3 | 1320 | - | sense intronic lncRNA gene | predicted gene 42941 | |
Tssr30908 | 3 | 22 | + | TSS region | transcription start site region 30908 | |
Cpgi13620 | 3 | 1342 | CpG island | CpG island 13620 | ||
Tssr989 | 3 | 25 | + | TSS region | transcription start site region 989 | |
Tssr34802 | 3 | 13 | - | TSS region | transcription start site region 34802 | |
Tssr34803 | 3 | 49 | - | TSS region | transcription start site region 34803 |