Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:99220448-100550488

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wars2 3 99140618 to 99221230 80612 + protein coding gene tryptophanyl tRNA synthetase 2 (mitochondrial)
Cpgi13609 3 99235055 to 99235390 335 CpG island CpG island 13609
Gm38468 3 99236908 to 99239123 2215 + lncRNA gene predicted gene, 38468
Iba2 3 99239727 to 99239868 141 QTL induction of brown adipocytes 2
D3Mit10 3 99239727 to 99239868 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 10
Tssr30857 3 99240328 to 99240337 9 + TSS region transcription start site region 30857
Tssr30858 3 99240361 to 99240385 24 + TSS region transcription start site region 30858
Tbx15 3 99240381 to 99354259 113878 + protein coding gene T-box 15
Gm46817 3 99240655 to 99241895 1240 - lncRNA gene predicted gene, 46817
Cpgi13610 3 99240794 to 99241599 805 CpG island CpG island 13610
Cpgi13611 3 99253276 to 99254339 1063 CpG island CpG island 13611
Tssr30859 3 99253333 to 99253345 12 + TSS region transcription start site region 30859
Tssr30860 3 99253346 to 99253383 37 + TSS region transcription start site region 30860
Tssr34737 3 99253500 to 99253511 11 - TSS region transcription start site region 34737
Tssr34738 3 99253581 to 99253599 18 - TSS region transcription start site region 34738
Tssr30861 3 99253754 to 99253807 53 + TSS region transcription start site region 30861
Gm43120 3 99254698 to 99261285 6587 - antisense lncRNA gene predicted gene 43120
Cpgi13612 3 99256993 to 99257270 277 CpG island CpG island 13612
Tssr30862 3 99296502 to 99296513 11 + TSS region transcription start site region 30862
Tssr30863 3 99296520 to 99296531 11 + TSS region transcription start site region 30863
Tssr982 3 99296545 to 99296554 9 + TSS region transcription start site region 982
Tssr30864 3 99316488 to 99316503 15 + TSS region transcription start site region 30864
Tssr34739 3 99352154 to 99352172 18 - TSS region transcription start site region 34739
Tssr30865 3 99352674 to 99352689 15 + TSS region transcription start site region 30865
Gm12449 3 99463592 to 99463825 233 - pseudogene predicted gene 12449
M6pr-ps 3 99500550 to 99501379 829 + pseudogene mannose-6-phosphate receptor, pseudogene
Gm12448 3 99544408 to 99545062 654 - pseudogene predicted gene 12448
Gm22505 3 99707740 to 99707847 107 - snRNA gene predicted gene, 22505
D3Mit283 3 99755175 to 99755321 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 283
D3Jpk1 3 99798719 to 99798982 263 DNA segment DNA segment, Chr 3, Japan, Kominami 1
Tssr30866 3 99885383 to 99885419 36 + TSS region transcription start site region 30866
Tssr30867 3 99885425 to 99885439 14 + TSS region transcription start site region 30867
Tssr30868 3 99885448 to 99885488 40 + TSS region transcription start site region 30868
Tssr30869 3 99968920 to 99968923 3 + TSS region transcription start site region 30869
Tssr30870 3 99981265 to 99981303 38 + TSS region transcription start site region 30870
Tssr30871 3 99981316 to 99981338 22 + TSS region transcription start site region 30871
Tssr34740 3 99981317 to 99981327 10 - TSS region transcription start site region 34740
Tssr30872 3 100008322 to 100008323 1 + TSS region transcription start site region 30872
Rpl36-ps7 3 100008360 to 100008674 314 + pseudogene ribosomal protein L36, pseudogene 7
Tra2b-ps 3 100078477 to 100078644 167 - pseudogene transformer 2 beta, pseudogene
Spag17os 3 100100684 to 100106895 6211 - antisense lncRNA gene sperm associated antigen 17, opposite strand
Wdr3 3 100138180 to 100162403 24223 - protein coding gene WD repeat domain 3
Tssr34741 3 100141713 to 100141725 12 - TSS region transcription start site region 34741
Spag17 3 100143322 to 99885417 -257905 + protein coding gene sperm associated antigen 17
Cpgi13613 3 100161983 to 100162988 1005 CpG island CpG island 13613
Tssr34742 3 100162364 to 100162414 50 - TSS region transcription start site region 34742
Tssr30873 3 100162454 to 100162536 82 + TSS region transcription start site region 30873
Gdap2 3 100162463 to 100206989 44526 + protein coding gene ganglioside-induced differentiation-associated-protein 2
Tssr30874 3 100162554 to 100162565 11 + TSS region transcription start site region 30874
Gm25802 3 100303288 to 100303364 76 + snoRNA gene predicted gene, 25802
Tssr34743 3 100365778 to 100365783 5 - TSS region transcription start site region 34743
Gm12464 3 100413560 to 100414575 1015 + pseudogene predicted gene 12464
Gm32471 3 100418082 to 100422416 4334 + lncRNA gene predicted gene, 32471
4930406D18Rik 3 100426405 to 100437754 11349 + lncRNA gene RIKEN cDNA 4930406D18 gene
Tssr30875 3 100426433 to 100426457 24 + TSS region transcription start site region 30875
Tssr30876 3 100436977 to 100436981 4 + TSS region transcription start site region 30876
Gm43121 3 100437834 to 100439138 1304 + lincRNA gene predicted gene 43121
Tssr30877 3 100439346 to 100439387 41 + TSS region transcription start site region 30877
Gm38530 3 100451809 to 100459575 7766 - lncRNA gene predicted gene, 38530
Ap6q 3 100465596 to 147339967 46874371 QTL alcohol preference 6 QTL
D3Mit12 3 100465596 to 100465744 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 12
Nctm1 3 100465744 to 97791322 -2674422 QTL Nakano cataract modifier 1
Tent5c 3 100468057 to 100489192 21135 - protein coding gene terminal nucleotidyltransferase 5C
Tssr34744 3 100472598 to 100472617 19 - TSS region transcription start site region 34744
Tssr34745 3 100476440 to 100476445 5 - TSS region transcription start site region 34745
Tssr34746 3 100483635 to 100483637 2 - TSS region transcription start site region 34746
Tssr34747 3 100487941 to 100487975 34 - TSS region transcription start site region 34747
Cpgi13614 3 100488231 to 100490043 1812 CpG island CpG island 13614
Tssr34748 3 100489163 to 100489215 52 - TSS region transcription start site region 34748
Tssr34749 3 100489234 to 100489248 14 - TSS region transcription start site region 34749
Tssr34750 3 100489294 to 100489316 22 - TSS region transcription start site region 34750
Tssr34751 3 100489329 to 100489354 25 - TSS region transcription start site region 34751
Tssr983 3 100489377 to 100489386 9 - TSS region transcription start site region 983
Tssr984 3 100489413 to 100489418 5 - TSS region transcription start site region 984
Tssr30878 3 100489463 to 100489496 33 + TSS region transcription start site region 30878
Tssr30879 3 100489508 to 100489560 52 + TSS region transcription start site region 30879
Gm12474 3 100489664 to 100523920 34256 + lincRNA gene predicted gene 12474
Gm40106 3 100495359 to 100541349 45990 - lncRNA gene predicted gene, 40106
Gm42868 3 100497429 to 100500125 2696 + sense intronic lncRNA gene predicted gene 42868