Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:99090603-103240715

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410 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12441 3 99100667 to 99101154 487 - pseudogene predicted gene 12441
Gm40105 3 99110959 to 99115695 4736 + lncRNA gene predicted gene, 40105
Gm22341 3 99113155 to 99113283 128 - snoRNA gene predicted gene, 22341
Gm24216 3 99124186 to 99124302 116 - snoRNA gene predicted gene, 24216
Wars2 3 99140618 to 99221230 80612 + protein coding gene tryptophanyl tRNA synthetase 2 (mitochondrial)
Cpgi13608 3 99140878 to 99141761 883 CpG island CpG island 13608
Tssr30855 3 99141063 to 99141072 9 + TSS region transcription start site region 30855
Tssr30856 3 99141081 to 99141103 22 + TSS region transcription start site region 30856
Gm43024 3 99144603 to 99148954 4351 + sense intronic lncRNA gene predicted gene 43024
Gm18982 3 99180753 to 99181281 528 - pseudogene predicted gene, 18982
Mir6481 3 99199344 to 99199453 109 - miRNA gene microRNA 6481
Gm42717 3 99206422 to 99209884 3462 + sense intronic lncRNA gene predicted gene 42717
Cpgi13609 3 99235055 to 99235390 335 CpG island CpG island 13609
Gm38468 3 99236908 to 99239123 2215 + lncRNA gene predicted gene, 38468
Iba2 3 99239727 to 99239868 141 QTL induction of brown adipocytes 2
D3Mit10 3 99239727 to 99239868 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 10
Tssr30857 3 99240328 to 99240337 9 + TSS region transcription start site region 30857
Tssr30858 3 99240361 to 99240385 24 + TSS region transcription start site region 30858
Tbx15 3 99240381 to 99354259 113878 + protein coding gene T-box 15
Gm46817 3 99240655 to 99241895 1240 - lncRNA gene predicted gene, 46817
Cpgi13610 3 99240794 to 99241599 805 CpG island CpG island 13610
Cpgi13611 3 99253276 to 99254339 1063 CpG island CpG island 13611
Tssr30859 3 99253333 to 99253345 12 + TSS region transcription start site region 30859
Tssr30860 3 99253346 to 99253383 37 + TSS region transcription start site region 30860
Tssr34737 3 99253500 to 99253511 11 - TSS region transcription start site region 34737
Tssr34738 3 99253581 to 99253599 18 - TSS region transcription start site region 34738
Tssr30861 3 99253754 to 99253807 53 + TSS region transcription start site region 30861
Gm43120 3 99254698 to 99261285 6587 - antisense lncRNA gene predicted gene 43120
Cpgi13612 3 99256993 to 99257270 277 CpG island CpG island 13612
Tssr30862 3 99296502 to 99296513 11 + TSS region transcription start site region 30862
Tssr30863 3 99296520 to 99296531 11 + TSS region transcription start site region 30863
Tssr982 3 99296545 to 99296554 9 + TSS region transcription start site region 982
Tssr30864 3 99316488 to 99316503 15 + TSS region transcription start site region 30864
Tssr34739 3 99352154 to 99352172 18 - TSS region transcription start site region 34739
Tssr30865 3 99352674 to 99352689 15 + TSS region transcription start site region 30865
Gm12449 3 99463592 to 99463825 233 - pseudogene predicted gene 12449
M6pr-ps 3 99500550 to 99501379 829 + pseudogene mannose-6-phosphate receptor, pseudogene
Gm12448 3 99544408 to 99545062 654 - pseudogene predicted gene 12448
Gm22505 3 99707740 to 99707847 107 - snRNA gene predicted gene, 22505
D3Mit283 3 99755175 to 99755321 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 283
D3Jpk1 3 99798719 to 99798982 263 DNA segment DNA segment, Chr 3, Japan, Kominami 1
Tssr30866 3 99885383 to 99885419 36 + TSS region transcription start site region 30866
Tssr30867 3 99885425 to 99885439 14 + TSS region transcription start site region 30867
Tssr30868 3 99885448 to 99885488 40 + TSS region transcription start site region 30868
Tssr30869 3 99968920 to 99968923 3 + TSS region transcription start site region 30869
Tssr30870 3 99981265 to 99981303 38 + TSS region transcription start site region 30870
Tssr30871 3 99981316 to 99981338 22 + TSS region transcription start site region 30871
Tssr34740 3 99981317 to 99981327 10 - TSS region transcription start site region 34740
Tssr30872 3 100008322 to 100008323 1 + TSS region transcription start site region 30872
Rpl36-ps7 3 100008360 to 100008674 314 + pseudogene ribosomal protein L36, pseudogene 7
Tra2b-ps 3 100078477 to 100078644 167 - pseudogene transformer 2 beta, pseudogene
Spag17os 3 100100684 to 100106895 6211 - antisense lncRNA gene sperm associated antigen 17, opposite strand
Wdr3 3 100138180 to 100162403 24223 - protein coding gene WD repeat domain 3
Tssr34741 3 100141713 to 100141725 12 - TSS region transcription start site region 34741
Spag17 3 100143322 to 99885417 -257905 + protein coding gene sperm associated antigen 17
Cpgi13613 3 100161983 to 100162988 1005 CpG island CpG island 13613
Tssr34742 3 100162364 to 100162414 50 - TSS region transcription start site region 34742
Tssr30873 3 100162454 to 100162536 82 + TSS region transcription start site region 30873
Gdap2 3 100162463 to 100206989 44526 + protein coding gene ganglioside-induced differentiation-associated-protein 2
Tssr30874 3 100162554 to 100162565 11 + TSS region transcription start site region 30874
Gm25802 3 100303288 to 100303364 76 + snoRNA gene predicted gene, 25802
Tssr34743 3 100365778 to 100365783 5 - TSS region transcription start site region 34743
Gm12464 3 100413560 to 100414575 1015 + pseudogene predicted gene 12464
Gm32471 3 100418082 to 100422416 4334 + lncRNA gene predicted gene, 32471
4930406D18Rik 3 100426405 to 100437754 11349 + lncRNA gene RIKEN cDNA 4930406D18 gene
Tssr30875 3 100426433 to 100426457 24 + TSS region transcription start site region 30875
Tssr30876 3 100436977 to 100436981 4 + TSS region transcription start site region 30876
Gm43121 3 100437834 to 100439138 1304 + lincRNA gene predicted gene 43121
Tssr30877 3 100439346 to 100439387 41 + TSS region transcription start site region 30877
Gm38530 3 100451809 to 100459575 7766 - lncRNA gene predicted gene, 38530
Ap6q 3 100465596 to 147339967 46874371 QTL alcohol preference 6 QTL
D3Mit12 3 100465596 to 100465744 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 12
Nctm1 3 100465744 to 97791322 -2674422 QTL Nakano cataract modifier 1
Tent5c 3 100468057 to 100489192 21135 - protein coding gene terminal nucleotidyltransferase 5C
Tssr34744 3 100472598 to 100472617 19 - TSS region transcription start site region 34744
Tssr34745 3 100476440 to 100476445 5 - TSS region transcription start site region 34745
Tssr34746 3 100483635 to 100483637 2 - TSS region transcription start site region 34746
Tssr34747 3 100487941 to 100487975 34 - TSS region transcription start site region 34747
Cpgi13614 3 100488231 to 100490043 1812 CpG island CpG island 13614
Tssr34748 3 100489163 to 100489215 52 - TSS region transcription start site region 34748
Tssr34749 3 100489234 to 100489248 14 - TSS region transcription start site region 34749
Tssr34750 3 100489294 to 100489316 22 - TSS region transcription start site region 34750
Tssr34751 3 100489329 to 100489354 25 - TSS region transcription start site region 34751
Tssr983 3 100489377 to 100489386 9 - TSS region transcription start site region 983
Tssr984 3 100489413 to 100489418 5 - TSS region transcription start site region 984
Tssr30878 3 100489463 to 100489496 33 + TSS region transcription start site region 30878
Tssr30879 3 100489508 to 100489560 52 + TSS region transcription start site region 30879
Gm12474 3 100489664 to 100523920 34256 + lincRNA gene predicted gene 12474
Gm40106 3 100495359 to 100541349 45990 - lncRNA gene predicted gene, 40106
Gm42868 3 100497429 to 100500125 2696 + sense intronic lncRNA gene predicted gene 42868
Ltpr3f 3 100556675 to 100556821 146 QTL Leishmania tropica response 3f
tnyw 3 100556675 to 121708839 21152164 heritable phenotypic marker tiny wasting
Ltpr3g 3 100556675 to 100556821 146 QTL Leishmania tropica response 3g
Lmr11a 3 100556675 to 100556821 146 QTL leishmaniasis resistance 11a
Ltpr3b 3 100556675 to 100556821 146 QTL Leishmania tropica response 3b
Ltpr3c 3 100556675 to 100556821 146 QTL Leishmania tropica response 3c
Ltpr3d 3 100556675 to 100556821 146 QTL Leishmania tropica response 3d
Ltpr3e 3 100556675 to 100556821 146 QTL Leishmania tropica response 3e
D3Mit11 3 100556675 to 100556821 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 11
Rapop3 3 100556821 to 90603910 -9952911 QTL radiation-induced apoptosis 3
Ltpr3 3 100556821 to 56796681 -43760140 QTL Leishmania tropica response 3
Man1a2 3 100562203 to 100685473 123270 - protein coding gene mannosidase, alpha, class 1A, member 2
Gm43466 3 100582314 to 100587527 5213 - sense intronic lncRNA gene predicted gene 43466
Gm42869 3 100624902 to 100627022 2120 - sense intronic lncRNA gene predicted gene 42869
Gm43462 3 100627297 to 100630944 3647 - sense intronic lncRNA gene predicted gene 43462
Tssr34752 3 100665218 to 100665230 12 - TSS region transcription start site region 34752
Gm43463 3 100678292 to 100680094 1802 - sense intronic lncRNA gene predicted gene 43463
Gm12485 3 100680265 to 100680555 290 + pseudogene predicted gene 12485
Tssr34753 3 100684590 to 100684626 36 - TSS region transcription start site region 34753
Cpgi13615 3 100684679 to 100686406 1727 CpG island CpG island 13615
Tssr34754 3 100684699 to 100684712 13 - TSS region transcription start site region 34754
Tssr34755 3 100684947 to 100684951 4 - TSS region transcription start site region 34755
Tssr34756 3 100685431 to 100685494 63 - TSS region transcription start site region 34756
Tssr30880 3 100685533 to 100685604 71 + TSS region transcription start site region 30880
Tssr34757 3 100685874 to 100685892 18 - TSS region transcription start site region 34757
Tssr34758 3 100685919 to 100686013 94 - TSS region transcription start site region 34758
Tssr30881 3 100692441 to 100692470 29 + TSS region transcription start site region 30881
Gm43464 3 100692706 to 100700084 7378 + lincRNA gene predicted gene 43464
Gm23465 3 100738452 to 100738713 261 - unclassified non-coding RNA gene predicted gene, 23465
Cia5b 3 100747868 to 103837463 3089595 QTL collagen induced arthritis QTL 5b
D3Mit75 3 100747868 to 100747974 106 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 75
Char4 3 100747974 to 69718176 -31029798 QTL P. chabaudi malaria resistance QTL 4
Tssr30882 3 100785724 to 100785756 32 + TSS region transcription start site region 30882
Gm40107 3 100811539 to 100817753 6214 - lncRNA gene predicted gene, 40107
Gm32720 3 100820397 to 100827023 6626 - lncRNA gene predicted gene, 32720
Tssr30883 3 100825452 to 100825467 15 + TSS region transcription start site region 30883
Vtcn1 3 100825459 to 100896922 71463 + protein coding gene V-set domain containing T cell activation inhibitor 1
Gm40108 3 100908937 to 100915220 6283 + lncRNA gene predicted gene, 40108
Tssr30884 3 100920775 to 100920783 8 + TSS region transcription start site region 30884
Tssr30885 3 100921692 to 100921702 10 + TSS region transcription start site region 30885
Cpgi13616 3 100921861 to 100922669 808 CpG island CpG island 13616
Tssr30886 3 100922436 to 100922473 37 + TSS region transcription start site region 30886
Tssr30887 3 100922482 to 100922499 17 + TSS region transcription start site region 30887
Trim45 3 100922493 to 100936925 14432 + protein coding gene tripartite motif-containing 45
Tssr30888 3 100924928 to 100924946 18 + TSS region transcription start site region 30888
Ttf2 3 100938860 to 100969663 30803 - protein coding gene transcription termination factor, RNA polymerase II
Gm12488 3 100955441 to 100955939 498 + pseudogene predicted gene 12488
Cpgi13617 3 100969293 to 100969894 601 CpG island CpG island 13617
Tssr34759 3 100969644 to 100969676 32 - TSS region transcription start site region 34759
Tssr34760 3 100969679 to 100969684 5 - TSS region transcription start site region 34760
D3Mit189 3 100975596 to 100975728 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 189
Cfsw1 3 100975596 to 100975728 132 QTL cystic fibrosis survival to weaning 1
Cd101 3 100993529 to 101029495 35966 - protein coding gene CD101 antigen
Tssr34761 3 101003754 to 101003789 35 - TSS region transcription start site region 34761
Tssr34762 3 101003810 to 101003829 19 - TSS region transcription start site region 34762
Tssr30889 3 101011014 to 101011048 34 + TSS region transcription start site region 30889
Tssr34763 3 101012111 to 101012128 17 - TSS region transcription start site region 34763
Tssr34764 3 101012130 to 101012141 11 - TSS region transcription start site region 34764
Tssr34765 3 101012148 to 101012162 14 - TSS region transcription start site region 34765
Tssr34766 3 101012678 to 101012687 9 - TSS region transcription start site region 34766
Tssr34767 3 101029524 to 101029533 9 - TSS region transcription start site region 34767
Tssr34768 3 101029543 to 101029558 15 - TSS region transcription start site region 34768
Ptgfrn 3 101040232 to 101110278 70046 - protein coding gene prostaglandin F2 receptor negative regulator
Tssr30890 3 101081732 to 101081737 5 + TSS region transcription start site region 30890
Gm43465 3 101084592 to 101087393 2801 - sense intronic lncRNA gene predicted gene 43465
Tssr34769 3 101097065 to 101097070 5 - TSS region transcription start site region 34769
Tssr34770 3 101106351 to 101106356 5 - TSS region transcription start site region 34770
Cpgi13618 3 101109432 to 101110996 1564 CpG island CpG island 13618
Tssr34771 3 101110156 to 101110170 14 - TSS region transcription start site region 34771
Tssr34772 3 101110281 to 101110294 13 - TSS region transcription start site region 34772
Tssr985 3 101110296 to 101110336 40 - TSS region transcription start site region 985
Tssr34773 3 101110374 to 101110469 95 - TSS region transcription start site region 34773
Tssr34774 3 101110747 to 101110782 35 - TSS region transcription start site region 34774
Tssr986 3 101130743 to 101130768 25 + TSS region transcription start site region 986
Tssr30891 3 101131049 to 101131065 16 + TSS region transcription start site region 30891
D3Mit342 3 101165603 to 101165715 112 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 342
Gm12486 3 101206859 to 101207399 540 - pseudogene predicted gene 12486
Tpt1-ps1 3 101233460 to 101233895 435 + pseudogene tumor protein, translationally-controlled, pseudogene 1
Tssr30892 3 101237541 to 101237549 8 + TSS region transcription start site region 30892
Tssr34775 3 101250616 to 101250619 3 - TSS region transcription start site region 34775
Gm12490 3 101260917 to 101261455 538 + pseudogene predicted gene 12490
Cd2 3 101275908 to 101287939 12031 - protein coding gene CD2 antigen
Tssr34776 3 101276175 to 101276223 48 - TSS region transcription start site region 34776
Tssr34777 3 101280286 to 101280307 21 - TSS region transcription start site region 34777
Tssr30893 3 101280632 to 101280672 40 + TSS region transcription start site region 30893
Tssr34778 3 101283157 to 101283161 4 - TSS region transcription start site region 34778
Tssr34779 3 101283962 to 101283969 7 - TSS region transcription start site region 34779
Tssr30894 3 101284136 to 101284157 21 + TSS region transcription start site region 30894
Tssr30895 3 101286565 to 101286569 4 + TSS region transcription start site region 30895
Tssr30896 3 101286640 to 101286646 6 + TSS region transcription start site region 30896
Tssr30897 3 101286675 to 101286678 3 + TSS region transcription start site region 30897
Tssr34780 3 101287546 to 101287554 8 - TSS region transcription start site region 34780
Tssr34781 3 101287841 to 101287861 20 - TSS region transcription start site region 34781
Tssr34782 3 101287882 to 101287893 11 - TSS region transcription start site region 34782
Tssr34783 3 101287897 to 101287957 60 - TSS region transcription start site region 34783
Tssr34784 3 101288127 to 101288142 15 - TSS region transcription start site region 34784
Tssr34785 3 101290739 to 101290754 15 - TSS region transcription start site region 34785
Gm32803 3 101290998 to 101296608 5610 - lncRNA gene predicted gene, 32803
Tssr34786 3 101296555 to 101296566 11 - TSS region transcription start site region 34786
Tssr30898 3 101297481 to 101297506 25 + TSS region transcription start site region 30898
Tssr30899 3 101297523 to 101297536 13 + TSS region transcription start site region 30899
Tssr34787 3 101300197 to 101300206 9 - TSS region transcription start site region 34787
Tssr34788 3 101300234 to 101300239 5 - TSS region transcription start site region 34788
Gm10355 3 101306563 to 101307079 516 - pseudogene predicted gene 10355
Tssr30900 3 101310451 to 101310466 15 + TSS region transcription start site region 30900
Gm43467 3 101310846 to 101311282 436 + pseudogene predicted gene 43467
Gm32848 3 101315914 to 101321293 5379 + lncRNA gene predicted gene, 32848
Gm32900 3 101339626 to 101354606 14980 - lncRNA gene predicted gene, 32900
Cpgi13619 3 101376497 to 101377974 1477 CpG island CpG island 13619
Tssr30901 3 101376990 to 101377023 33 + TSS region transcription start site region 30901