Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:98858500-99648511

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hsd3b1 3 98852194 to 98859794 7600 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
Tssr34721 3 98859711 to 98859721 10 - TSS region transcription start site region 34721
Tssr34722 3 98859729 to 98859749 20 - TSS region transcription start site region 34722
Tssr34723 3 98859753 to 98859769 16 - TSS region transcription start site region 34723
Tssr34724 3 98859774 to 98859800 26 - TSS region transcription start site region 34724
Hao2 3 98874521 to 98893239 18718 - protein coding gene hydroxyacid oxidase 2
Tssr34725 3 98880673 to 98880693 20 - TSS region transcription start site region 34725
Tssr30854 3 98881249 to 98881253 4 + TSS region transcription start site region 30854
Tssr34726 3 98882018 to 98882036 18 - TSS region transcription start site region 34726
Tssr34727 3 98882038 to 98882071 33 - TSS region transcription start site region 34727
Tssr34728 3 98882075 to 98882090 15 - TSS region transcription start site region 34728
Tssr34729 3 98882159 to 98882170 11 - TSS region transcription start site region 34729
Tssr34730 3 98882222 to 98882227 5 - TSS region transcription start site region 34730
Tssr34731 3 98882233 to 98882239 6 - TSS region transcription start site region 34731
Tssr34732 3 98882240 to 98882268 28 - TSS region transcription start site region 34732
Tssr34733 3 98882283 to 98882294 11 - TSS region transcription start site region 34733
Tssr34734 3 98882297 to 98882307 10 - TSS region transcription start site region 34734
Tssr34735 3 98882312 to 98882323 11 - TSS region transcription start site region 34735
Tssr34736 3 98893209 to 98893245 36 - TSS region transcription start site region 34736
Gm31880 3 98897826 to 98932525 34699 - lncRNA gene predicted gene, 31880
5730437C11Rik 3 98937649 to 98941256 3607 - lincRNA gene RIKEN cDNA 5730437C11 gene
Cpgi13607 3 98941173 to 98941525 352 CpG island CpG island 13607
D3Mit190 3 99001749 to 99001884 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 190
Gm12440 3 99049822 to 99053742 3920 + lincRNA gene predicted gene 12440
Gm12441 3 99100667 to 99101154 487 - pseudogene predicted gene 12441
Gm40105 3 99110959 to 99115695 4736 + lncRNA gene predicted gene, 40105
Gm22341 3 99113155 to 99113283 128 - snoRNA gene predicted gene, 22341
Gm24216 3 99124186 to 99124302 116 - snoRNA gene predicted gene, 24216
Wars2 3 99140618 to 99221230 80612 + protein coding gene tryptophanyl tRNA synthetase 2 (mitochondrial)
Cpgi13608 3 99140878 to 99141761 883 CpG island CpG island 13608
Tssr30855 3 99141063 to 99141072 9 + TSS region transcription start site region 30855
Tssr30856 3 99141081 to 99141103 22 + TSS region transcription start site region 30856
Gm43024 3 99144603 to 99148954 4351 + sense intronic lncRNA gene predicted gene 43024
Gm18982 3 99180753 to 99181281 528 - pseudogene predicted gene, 18982
Mir6481 3 99199344 to 99199453 109 - miRNA gene microRNA 6481
Gm42717 3 99206422 to 99209884 3462 + sense intronic lncRNA gene predicted gene 42717
Cpgi13609 3 99235055 to 99235390 335 CpG island CpG island 13609
Gm38468 3 99236908 to 99239123 2215 + lncRNA gene predicted gene, 38468
D3Mit10 3 99239727 to 99239868 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 10
Iba2 3 99239727 to 99239868 141 QTL induction of brown adipocytes 2
Tssr30857 3 99240328 to 99240337 9 + TSS region transcription start site region 30857
Tssr30858 3 99240361 to 99240385 24 + TSS region transcription start site region 30858
Tbx15 3 99240381 to 99354259 113878 + protein coding gene T-box 15
Gm46817 3 99240655 to 99241895 1240 - lncRNA gene predicted gene, 46817
Cpgi13610 3 99240794 to 99241599 805 CpG island CpG island 13610
Cpgi13611 3 99253276 to 99254339 1063 CpG island CpG island 13611
Tssr30859 3 99253333 to 99253345 12 + TSS region transcription start site region 30859
Tssr30860 3 99253346 to 99253383 37 + TSS region transcription start site region 30860
Tssr34737 3 99253500 to 99253511 11 - TSS region transcription start site region 34737
Tssr34738 3 99253581 to 99253599 18 - TSS region transcription start site region 34738
Tssr30861 3 99253754 to 99253807 53 + TSS region transcription start site region 30861
Gm43120 3 99254698 to 99261285 6587 - antisense lncRNA gene predicted gene 43120
Cpgi13612 3 99256993 to 99257270 277 CpG island CpG island 13612
Tssr30862 3 99296502 to 99296513 11 + TSS region transcription start site region 30862
Tssr30863 3 99296520 to 99296531 11 + TSS region transcription start site region 30863
Tssr982 3 99296545 to 99296554 9 + TSS region transcription start site region 982
Tssr30864 3 99316488 to 99316503 15 + TSS region transcription start site region 30864
Tssr34739 3 99352154 to 99352172 18 - TSS region transcription start site region 34739
Tssr30865 3 99352674 to 99352689 15 + TSS region transcription start site region 30865
Gm12449 3 99463592 to 99463825 233 - pseudogene predicted gene 12449
M6pr-ps 3 99500550 to 99501379 829 + pseudogene mannose-6-phosphate receptor, pseudogene
Gm12448 3 99544408 to 99545062 654 - pseudogene predicted gene 12448