Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:9816209-10786218

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pag1 3 9687479 to 9833679 146200 - protein coding gene phosphoprotein associated with glycosphingolipid microdomains 1
Gm24786 3 9829620 to 9829728 108 - rRNA gene predicted gene, 24786
Cpgi12976 3 9832798 to 9834242 1444 CpG island CpG island 12976
Tssr32589 3 9833596 to 9833611 15 - TSS region transcription start site region 32589
Tssr32590 3 9833617 to 9833638 21 - TSS region transcription start site region 32590
Tssr32591 3 9833653 to 9833668 15 - TSS region transcription start site region 32591
Tssr32592 3 9853122 to 9853134 12 - TSS region transcription start site region 32592
Tssr28351 3 9853227 to 9853238 11 + TSS region transcription start site region 28351
Tssr28352 3 9853248 to 9853282 34 + TSS region transcription start site region 28352
Tssr816 3 9853293 to 9853300 7 + TSS region transcription start site region 816
Tssr32593 3 9879487 to 9879528 41 - TSS region transcription start site region 32593
Gm33273 3 9880628 to 9885288 4660 - lncRNA gene predicted gene, 33273
Tssr32594 3 9884724 to 9884741 17 - TSS region transcription start site region 32594
Tssr32595 3 9886698 to 9886712 14 - TSS region transcription start site region 32595
Tssr32596 3 9886725 to 9886732 7 - TSS region transcription start site region 32596
Tssr28353 3 9886942 to 9886952 10 + TSS region transcription start site region 28353
Tssr28354 3 9886977 to 9886988 11 + TSS region transcription start site region 28354
Tssr817 3 9887460 to 9887466 6 + TSS region transcription start site region 817
Tssr818 3 9890838 to 9890880 42 - TSS region transcription start site region 818
Gm6236 3 9899433 to 9902377 2944 + pseudogene predicted gene 6236
Tssr28355 3 9942931 to 9942941 10 + TSS region transcription start site region 28355
Tssr28356 3 9942942 to 9942961 19 + TSS region transcription start site region 28356
Cpgi12977 3 9959722 to 9960156 434 CpG island CpG island 12977
Gm17877 3 9971188 to 9972001 813 - pseudogene predicted gene, 17877
Cpgi12978 3 9974261 to 9974578 317 CpG island CpG island 12978
Tssr28357 3 9984225 to 9984242 17 + TSS region transcription start site region 28357
Tssr28358 3 9988259 to 9988278 19 + TSS region transcription start site region 28358
Tssr819 3 9997552 to 9997566 14 + TSS region transcription start site region 819
Cpgi12979 3 10012184 to 10013433 1249 CpG island CpG island 12979
Tssr28359 3 10012564 to 10012598 34 + TSS region transcription start site region 28359
Fabp5 3 10012585 to 10016610 4025 + protein coding gene fatty acid binding protein 5, epidermal
Tssr28360 3 10012611 to 10012622 11 + TSS region transcription start site region 28360
Tssr28361 3 10013215 to 10013263 48 + TSS region transcription start site region 28361
Tssr28362 3 10014510 to 10014513 3 + TSS region transcription start site region 28362
Gm38335 3 10022311 to 10025539 3228 - lincRNA gene predicted gene, 38335
Tssr32597 3 10022560 to 10022594 34 - TSS region transcription start site region 32597
Tssr32598 3 10025536 to 10025540 4 - TSS region transcription start site region 32598
Gm33365 3 10043293 to 10064335 21042 - lncRNA gene predicted gene, 33365
Cpgi12980 3 10087785 to 10088324 539 CpG island CpG island 12980
Tssr28363 3 10088106 to 10088126 20 + TSS region transcription start site region 28363
Gm9833 3 10088277 to 10092562 4285 + protein coding gene predicted gene 9833
Gm37308 3 10089856 to 10089955 99 - pseudogene predicted gene, 37308
Tssr32599 3 10137460 to 10137493 33 - TSS region transcription start site region 32599
Pmp2 3 10179851 to 10183885 4034 - protein coding gene peripheral myelin protein 2
Gm37389 3 10179852 to 10197262 17410 - protein coding gene predicted gene, 37389
Tssr32600 3 10183923 to 10183927 4 - TSS region transcription start site region 32600
D3Mit130.3 3 10184028 to 10184179 151 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 130.3
Hrtpq1 3 10184161 to 83277639 73093478 QTL heart weight percentage QTL 1
W10q3 3 10184161 to 83277639 73093478 QTL weight 10 weeks QTL 3
D3Mit130 3 10184161 to 10184285 124 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 130
Splq6 3 10184161 to 83277639 73093478 QTL spleen weight QTL 6
Lvrq5 3 10184161 to 83277639 73093478 QTL liver weight QTL 5
Lgaq4 3 10184161 to 83277639 73093478 QTL late growth adjusted QTL 4
Lgq3 3 10184161 to 83277639 73093478 QTL late growth QTL 3
Tssr28364 3 10186688 to 10186691 3 + TSS region transcription start site region 28364
Fabp9 3 10193623 to 10197283 3660 - protein coding gene fatty acid binding protein 9, testis
Tssr32601 3 10194712 to 10194719 7 - TSS region transcription start site region 32601
Tssr32602 3 10197216 to 10197228 12 - TSS region transcription start site region 32602
Tssr32603 3 10197241 to 10197266 25 - TSS region transcription start site region 32603
Fabp4 3 10204342 to 10208602 4260 - protein coding gene fatty acid binding protein 4, adipocyte
D3Mit23 3 10204598 to 10204739 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 23
Tssr28365 3 10205230 to 10205242 12 + TSS region transcription start site region 28365
Tssr32604 3 10205337 to 10205354 17 - TSS region transcription start site region 32604
Tssr32605 3 10206043 to 10206058 15 - TSS region transcription start site region 32605
Tssr32606 3 10208569 to 10208586 17 - TSS region transcription start site region 32606
4632432E15Rik 3 10220995 to 10223433 2438 - unclassified gene RIKEN cDNA 4632432E15 gene
Gm37421 3 10232180 to 10232311 131 + pseudogene predicted gene, 37421
1700029B24Rik 3 10241812 to 10242308 496 + unclassified gene RIKEN cDNA 1700029B24 gene
Fabp12 3 10244209 to 10301183 56974 - protein coding gene fatty acid binding protein 12
Tssr32607 3 10254200 to 10254208 8 - TSS region transcription start site region 32607
Tssr32608 3 10254213 to 10254262 49 - TSS region transcription start site region 32608
Tssr28366 3 10288045 to 10288085 40 + TSS region transcription start site region 28366
Tssr32609 3 10301169 to 10301202 33 - TSS region transcription start site region 32609
Tssr32610 3 10301209 to 10301218 9 - TSS region transcription start site region 32610
Tssr32611 3 10301298 to 10301310 12 - TSS region transcription start site region 32611
A930014E01Rik 3 10304791 to 10305120 329 + lncRNA gene RIKEN cDNA A930014E01 gene
Gm38364 3 10309048 to 10309226 178 + pseudogene predicted gene, 38364
Impa1 3 10311956 to 10331439 19483 - protein coding gene inositol (myo)-1(or 4)-monophosphatase 1
Gm38303 3 10321712 to 10335681 13969 - protein coding gene predicted gene, 38303
Cpgi12981 3 10330983 to 10331583 600 CpG island CpG island 12981
Tssr32612 3 10331284 to 10331286 2 - TSS region transcription start site region 32612
Tssr32613 3 10331358 to 10331425 67 - TSS region transcription start site region 32613
Slc10a5 3 10331734 to 10335656 3922 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 5
Tssr32614 3 10335409 to 10335441 32 - TSS region transcription start site region 32614
Tssr32615 3 10335650 to 10335661 11 - TSS region transcription start site region 32615
Tssr32616 3 10335676 to 10335687 11 - TSS region transcription start site region 32616
Tssr32617 3 10335689 to 10335707 18 - TSS region transcription start site region 32617
Tssr32618 3 10335715 to 10335724 9 - TSS region transcription start site region 32618
Zfand1 3 10339953 to 10351317 11364 - protein coding gene zinc finger, AN1-type domain 1
Tssr28367 3 10342788 to 10342837 49 + TSS region transcription start site region 28367
Tssr32619 3 10346035 to 10346039 4 - TSS region transcription start site region 32619
Tssr32620 3 10346105 to 10346125 20 - TSS region transcription start site region 32620
Cpgi12982 3 10350925 to 10351566 641 CpG island CpG island 12982
Tssr28368 3 10350972 to 10350981 9 + TSS region transcription start site region 28368
Tssr32621 3 10351314 to 10351342 28 - TSS region transcription start site region 32621
Tssr28369 3 10351511 to 10351552 41 + TSS region transcription start site region 28369
Cpgi12983 3 10366857 to 10367247 390 CpG island CpG island 12983
Tssr28370 3 10366903 to 10366922 19 + TSS region transcription start site region 28370
Tssr28371 3 10366927 to 10366963 36 + TSS region transcription start site region 28371
Tssr28372 3 10366967 to 10366987 20 + TSS region transcription start site region 28372
Chmp4c 3 10366973 to 10391005 24032 + protein coding gene charged multivesicular body protein 4C
Tssr28373 3 10366992 to 10367001 9 + TSS region transcription start site region 28373
Tssr28374 3 10367009 to 10367026 17 + TSS region transcription start site region 28374
Snx16 3 10417817 to 10440102 22285 - protein coding gene sorting nexin 16
5430403G19Rik 3 10426593 to 10428865 2272 unclassified non-coding RNA gene RIKEN cDNA 5430403G19 gene
A630040H13Rik 3 10430763 to 10434206 3443 unclassified gene RIKEN cDNA A630040H13 gene
Cpgi12984 3 10439393 to 10440235 842 CpG island CpG island 12984
Tssr32622 3 10439960 to 10439977 17 - TSS region transcription start site region 32622
Tssr32623 3 10439995 to 10440006 11 - TSS region transcription start site region 32623
Tssr32624 3 10440008 to 10440022 14 - TSS region transcription start site region 32624
Tssr32625 3 10440054 to 10440127 73 - TSS region transcription start site region 32625
D3Mit265 3 10636379 to 10636517 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 265
Gm37831 3 10646316 to 10648102 1786 + unclassified gene predicted gene, 37831
Gm18692 3 10753918 to 10754428 510 - pseudogene predicted gene, 18692
Tssr28375 3 10760335 to 10760380 45 + TSS region transcription start site region 28375
Gm37244 3 10772919 to 10774899 1980 - unclassified gene predicted gene, 37244