Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:98087176-98617184

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Notch2 3 98013538 to 98150367 136829 + protein coding gene notch 2
Tssr30817 3 98109199 to 98109218 19 + TSS region transcription start site region 30817
Tssr30818 3 98114358 to 98114377 19 + TSS region transcription start site region 30818
Gm42820 3 98121588 to 98124650 3062 + unclassified gene predicted gene 42820
Tssr30819 3 98127009 to 98127031 22 + TSS region transcription start site region 30819
Tssr30820 3 98127092 to 98127117 25 + TSS region transcription start site region 30820
Tssr30821 3 98146450 to 98146480 30 + TSS region transcription start site region 30821
Tssr30822 3 98147167 to 98147178 11 + TSS region transcription start site region 30822
Tssr30823 3 98149082 to 98149109 27 + TSS region transcription start site region 30823
Tssr30824 3 98149803 to 98149805 2 + TSS region transcription start site region 30824
Tssr30825 3 98149855 to 98149876 21 + TSS region transcription start site region 30825
Tssr30826 3 98160623 to 98160639 16 + TSS region transcription start site region 30826
Adam30 3 98160634 to 98164169 3535 + protein coding gene a disintegrin and metallopeptidase domain 30
Tssr30827 3 98160640 to 98160651 11 + TSS region transcription start site region 30827
Pcfm3 3 98177336 to 98177481 145 QTL periosteal circumference and femur length 3
D3Mit213 3 98177336 to 98177481 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 213
Gm9771 3 98189966 to 98191102 1136 - pseudogene predicted gene 9771
Gm40104 3 98202347 to 98206760 4413 + lncRNA gene predicted gene, 40104
Tssr976 3 98221753 to 98221756 3 + TSS region transcription start site region 976
Tssr30828 3 98222148 to 98222164 16 + TSS region transcription start site region 30828
Reg4 3 98222156 to 98236748 14592 + protein coding gene regenerating islet-derived family, member 4
Cpgi13602 3 98222269 to 98222438 169 CpG island CpG island 13602
Gm42821 3 98248599 to 98249087 488 + pseudogene predicted gene 42821
Tssr30829 3 98279930 to 98279952 22 + TSS region transcription start site region 30829
Tssr30830 3 98280030 to 98280036 6 + TSS region transcription start site region 30830
Tssr30831 3 98280427 to 98280444 17 + TSS region transcription start site region 30831
Hmgcs2 3 98280435 to 98310738 30303 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
Tssr30832 3 98281475 to 98281492 17 + TSS region transcription start site region 30832
Gm43189 3 98286988 to 98290056 3068 + sense intronic lncRNA gene predicted gene 43189
Tssr30833 3 98287007 to 98287008 1 + TSS region transcription start site region 30833
Tssr30834 3 98290891 to 98290907 16 + TSS region transcription start site region 30834
Tssr30835 3 98291115 to 98291126 11 + TSS region transcription start site region 30835
Tssr30836 3 98291251 to 98291264 13 + TSS region transcription start site region 30836
Tssr30837 3 98291284 to 98291299 15 + TSS region transcription start site region 30837
Tssr30838 3 98299108 to 98299131 23 + TSS region transcription start site region 30838
Tssr30839 3 98299171 to 98299178 7 + TSS region transcription start site region 30839
Tssr30840 3 98299206 to 98299226 20 + TSS region transcription start site region 30840
Tssr30841 3 98302609 to 98302637 28 + TSS region transcription start site region 30841
Tssr30842 3 98309023 to 98309042 19 + TSS region transcription start site region 30842
Tssr30843 3 98309088 to 98309099 11 + TSS region transcription start site region 30843
Tssr30844 3 98309155 to 98309169 14 + TSS region transcription start site region 30844
Tssr30845 3 98310024 to 98310046 22 + TSS region transcription start site region 30845
Phgdh 3 98313171 to 98339969 26798 - protein coding gene 3-phosphoglycerate dehydrogenase
Tssr34694 3 98314999 to 98315003 4 - TSS region transcription start site region 34694
Tssr34695 3 98319033 to 98319036 3 - TSS region transcription start site region 34695
Tssr34696 3 98335652 to 98335656 4 - TSS region transcription start site region 34696
Cpgi13603 3 98338807 to 98339703 896 CpG island CpG island 13603
Tssr34697 3 98339921 to 98339945 24 - TSS region transcription start site region 34697
Gm31420 3 98351513 to 98354968 3455 + lncRNA gene predicted gene, 31420
Tssr977 3 98352168 to 98352173 5 - TSS region transcription start site region 977
Tssr34698 3 98352176 to 98352184 8 - TSS region transcription start site region 34698
Zfp697 3 98381339 to 98431951 50612 + protein coding gene zinc finger protein 697
Cpgi13604 3 98382159 to 98383226 1067 CpG island CpG island 13604
Tssr34699 3 98382379 to 98382421 42 - TSS region transcription start site region 34699
Tssr30846 3 98382438 to 98382520 82 + TSS region transcription start site region 30846
Tssr30847 3 98382538 to 98382553 15 + TSS region transcription start site region 30847
Cpgi13605 3 98427179 to 98428737 1558 CpG island CpG island 13605
Tssr30848 3 98427772 to 98427793 21 + TSS region transcription start site region 30848
Gm4450 3 98445675 to 98457126 11451 - protein coding gene predicted gene 4450
Gm43190 3 98447198 to 98448976 1778 - sense intronic lncRNA gene predicted gene 43190
Gm19210 3 98469491 to 98473206 3715 - pseudogene predicted gene, 19210
Hsd3b4 3 98499071 to 98510514 11443 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
Gm19211 3 98522948 to 98526683 3735 - pseudogene predicted gene, 19211
Gm10681 3 98552542 to 98564050 11508 - protein coding gene predicted gene 10681
Gm5853 3 98579767 to 98580398 631 - pseudogene predicted gene 5853
Tssr34700 3 98580550 to 98580555 5 - TSS region transcription start site region 34700
Gm9678 3 98581153 to 98588290 7137 - pseudogene predicted gene 9678
Tssr978 3 98592431 to 98592432 1 + TSS region transcription start site region 978
Tssr30849 3 98599619 to 98599628 9 + TSS region transcription start site region 30849
Tssr30850 3 98600886 to 98600899 13 + TSS region transcription start site region 30850