Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:98064344-100334453

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Notch2 3 98013538 to 98150367 136829 + protein coding gene notch 2
Tssr34693 3 98069339 to 98069351 12 - TSS region transcription start site region 34693
Tssr30817 3 98109199 to 98109218 19 + TSS region transcription start site region 30817
Tssr30818 3 98114358 to 98114377 19 + TSS region transcription start site region 30818
Gm42820 3 98121588 to 98124650 3062 + unclassified gene predicted gene 42820
Tssr30819 3 98127009 to 98127031 22 + TSS region transcription start site region 30819
Tssr30820 3 98127092 to 98127117 25 + TSS region transcription start site region 30820
Tssr30821 3 98146450 to 98146480 30 + TSS region transcription start site region 30821
Tssr30822 3 98147167 to 98147178 11 + TSS region transcription start site region 30822
Tssr30823 3 98149082 to 98149109 27 + TSS region transcription start site region 30823
Tssr30824 3 98149803 to 98149805 2 + TSS region transcription start site region 30824
Tssr30825 3 98149855 to 98149876 21 + TSS region transcription start site region 30825
Tssr30826 3 98160623 to 98160639 16 + TSS region transcription start site region 30826
Adam30 3 98160634 to 98164169 3535 + protein coding gene a disintegrin and metallopeptidase domain 30
Tssr30827 3 98160640 to 98160651 11 + TSS region transcription start site region 30827
Pcfm3 3 98177336 to 98177481 145 QTL periosteal circumference and femur length 3
D3Mit213 3 98177336 to 98177481 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 213
Gm9771 3 98189966 to 98191102 1136 - pseudogene predicted gene 9771
Gm40104 3 98202347 to 98206760 4413 + lncRNA gene predicted gene, 40104
Tssr976 3 98221753 to 98221756 3 + TSS region transcription start site region 976
Tssr30828 3 98222148 to 98222164 16 + TSS region transcription start site region 30828
Reg4 3 98222156 to 98236748 14592 + protein coding gene regenerating islet-derived family, member 4
Cpgi13602 3 98222269 to 98222438 169 CpG island CpG island 13602
Gm42821 3 98248599 to 98249087 488 + pseudogene predicted gene 42821
Tssr30829 3 98279930 to 98279952 22 + TSS region transcription start site region 30829
Tssr30830 3 98280030 to 98280036 6 + TSS region transcription start site region 30830
Tssr30831 3 98280427 to 98280444 17 + TSS region transcription start site region 30831
Hmgcs2 3 98280435 to 98310738 30303 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
Tssr30832 3 98281475 to 98281492 17 + TSS region transcription start site region 30832
Gm43189 3 98286988 to 98290056 3068 + sense intronic lncRNA gene predicted gene 43189
Tssr30833 3 98287007 to 98287008 1 + TSS region transcription start site region 30833
Tssr30834 3 98290891 to 98290907 16 + TSS region transcription start site region 30834
Tssr30835 3 98291115 to 98291126 11 + TSS region transcription start site region 30835
Tssr30836 3 98291251 to 98291264 13 + TSS region transcription start site region 30836
Tssr30837 3 98291284 to 98291299 15 + TSS region transcription start site region 30837
Tssr30838 3 98299108 to 98299131 23 + TSS region transcription start site region 30838
Tssr30839 3 98299171 to 98299178 7 + TSS region transcription start site region 30839
Tssr30840 3 98299206 to 98299226 20 + TSS region transcription start site region 30840
Tssr30841 3 98302609 to 98302637 28 + TSS region transcription start site region 30841
Tssr30842 3 98309023 to 98309042 19 + TSS region transcription start site region 30842
Tssr30843 3 98309088 to 98309099 11 + TSS region transcription start site region 30843
Tssr30844 3 98309155 to 98309169 14 + TSS region transcription start site region 30844
Tssr30845 3 98310024 to 98310046 22 + TSS region transcription start site region 30845
Phgdh 3 98313171 to 98339969 26798 - protein coding gene 3-phosphoglycerate dehydrogenase
Tssr34694 3 98314999 to 98315003 4 - TSS region transcription start site region 34694
Tssr34695 3 98319033 to 98319036 3 - TSS region transcription start site region 34695
Tssr34696 3 98335652 to 98335656 4 - TSS region transcription start site region 34696
Cpgi13603 3 98338807 to 98339703 896 CpG island CpG island 13603
Tssr34697 3 98339921 to 98339945 24 - TSS region transcription start site region 34697
Gm31420 3 98351513 to 98354968 3455 + lncRNA gene predicted gene, 31420
Tssr977 3 98352168 to 98352173 5 - TSS region transcription start site region 977
Tssr34698 3 98352176 to 98352184 8 - TSS region transcription start site region 34698
Zfp697 3 98381339 to 98431951 50612 + protein coding gene zinc finger protein 697
Cpgi13604 3 98382159 to 98383226 1067 CpG island CpG island 13604
Tssr34699 3 98382379 to 98382421 42 - TSS region transcription start site region 34699
Tssr30846 3 98382438 to 98382520 82 + TSS region transcription start site region 30846
Tssr30847 3 98382538 to 98382553 15 + TSS region transcription start site region 30847
Cpgi13605 3 98427179 to 98428737 1558 CpG island CpG island 13605
Tssr30848 3 98427772 to 98427793 21 + TSS region transcription start site region 30848
Gm4450 3 98445675 to 98457126 11451 - protein coding gene predicted gene 4450
Gm43190 3 98447198 to 98448976 1778 - sense intronic lncRNA gene predicted gene 43190
Gm19210 3 98469491 to 98473206 3715 - pseudogene predicted gene, 19210
Hsd3b4 3 98499071 to 98510514 11443 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
Gm19211 3 98522948 to 98526683 3735 - pseudogene predicted gene, 19211
Gm10681 3 98552542 to 98564050 11508 - protein coding gene predicted gene 10681
Gm5853 3 98579767 to 98580398 631 - pseudogene predicted gene 5853
Tssr34700 3 98580550 to 98580555 5 - TSS region transcription start site region 34700
Gm9678 3 98581153 to 98588290 7137 - pseudogene predicted gene 9678
Tssr978 3 98592431 to 98592432 1 + TSS region transcription start site region 978
Tssr30849 3 98599619 to 98599628 9 + TSS region transcription start site region 30849
Tssr30850 3 98600886 to 98600899 13 + TSS region transcription start site region 30850
Hsd3b5 3 98618634 to 98630252 11618 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5
Tssr34701 3 98645518 to 98645564 46 - TSS region transcription start site region 34701
Gm12399 3 98669873 to 98672293 2420 - pseudogene predicted gene 12399
Gm12400 3 98680832 to 98688182 7350 - pseudogene predicted gene 12400
Tssr30851 3 98684923 to 98684932 9 + TSS region transcription start site region 30851
Hsd3b2 3 98711107 to 98724595 13488 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
Tssr34702 3 98723893 to 98723925 32 - TSS region transcription start site region 34702
Tssr34703 3 98724554 to 98724577 23 - TSS region transcription start site region 34703
Hsd3b3 3 98741523 to 98763127 21604 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
Tssr34704 3 98741854 to 98741866 12 - TSS region transcription start site region 34704
Tssr34705 3 98760552 to 98760573 21 - TSS region transcription start site region 34705
Hsd3b6 3 98805504 to 98814443 8939 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
Tssr34706 3 98814434 to 98814449 15 - TSS region transcription start site region 34706
Gm12427 3 98818082 to 98820019 1937 - pseudogene predicted gene 12427
Cpgi13606 3 98820912 to 98821124 212 CpG island CpG island 13606
Gm12428 3 98821038 to 98821764 726 + pseudogene predicted gene 12428
Gm12431 3 98842871 to 98843038 167 - pseudogene predicted gene 12431
Gm12432 3 98846339 to 98846524 185 - pseudogene predicted gene 12432
Gm12433 3 98846506 to 98846760 254 + pseudogene predicted gene 12433
Hsd3b1 3 98852194 to 98859794 7600 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
Tssr30852 3 98852555 to 98852566 11 + TSS region transcription start site region 30852
Tssr30853 3 98852710 to 98852731 21 + TSS region transcription start site region 30853
Tssr34707 3 98852943 to 98852962 19 - TSS region transcription start site region 34707
Tssr34708 3 98853130 to 98853143 13 - TSS region transcription start site region 34708
Tssr34709 3 98853276 to 98853290 14 - TSS region transcription start site region 34709
Tssr34710 3 98853330 to 98853347 17 - TSS region transcription start site region 34710
Tssr34711 3 98856066 to 98856081 15 - TSS region transcription start site region 34711
Tssr979 3 98857914 to 98857915 1 - TSS region transcription start site region 979
Tssr34712 3 98857920 to 98857931 11 - TSS region transcription start site region 34712
Tssr34713 3 98857967 to 98857985 18 - TSS region transcription start site region 34713
Tssr34714 3 98858006 to 98858017 11 - TSS region transcription start site region 34714
Tssr34715 3 98858100 to 98858120 20 - TSS region transcription start site region 34715
Tssr34716 3 98858123 to 98858139 16 - TSS region transcription start site region 34716
Tssr34717 3 98858183 to 98858231 48 - TSS region transcription start site region 34717
Tssr34718 3 98858243 to 98858265 22 - TSS region transcription start site region 34718
Tssr34719 3 98858289 to 98858296 7 - TSS region transcription start site region 34719
Tssr980 3 98858301 to 98858305 4 - TSS region transcription start site region 980
Tssr34720 3 98858310 to 98858312 2 - TSS region transcription start site region 34720
Tssr981 3 98858327 to 98858328 1 - TSS region transcription start site region 981
Tssr34721 3 98859711 to 98859721 10 - TSS region transcription start site region 34721
Tssr34722 3 98859729 to 98859749 20 - TSS region transcription start site region 34722
Tssr34723 3 98859753 to 98859769 16 - TSS region transcription start site region 34723
Tssr34724 3 98859774 to 98859800 26 - TSS region transcription start site region 34724
Hao2 3 98874521 to 98893239 18718 - protein coding gene hydroxyacid oxidase 2
Tssr34725 3 98880673 to 98880693 20 - TSS region transcription start site region 34725
Tssr30854 3 98881249 to 98881253 4 + TSS region transcription start site region 30854
Tssr34726 3 98882018 to 98882036 18 - TSS region transcription start site region 34726
Tssr34727 3 98882038 to 98882071 33 - TSS region transcription start site region 34727
Tssr34728 3 98882075 to 98882090 15 - TSS region transcription start site region 34728
Tssr34729 3 98882159 to 98882170 11 - TSS region transcription start site region 34729
Tssr34730 3 98882222 to 98882227 5 - TSS region transcription start site region 34730
Tssr34731 3 98882233 to 98882239 6 - TSS region transcription start site region 34731
Tssr34732 3 98882240 to 98882268 28 - TSS region transcription start site region 34732
Tssr34733 3 98882283 to 98882294 11 - TSS region transcription start site region 34733
Tssr34734 3 98882297 to 98882307 10 - TSS region transcription start site region 34734
Tssr34735 3 98882312 to 98882323 11 - TSS region transcription start site region 34735
Tssr34736 3 98893209 to 98893245 36 - TSS region transcription start site region 34736
Gm31880 3 98897826 to 98932525 34699 - lncRNA gene predicted gene, 31880
5730437C11Rik 3 98937649 to 98941256 3607 - lincRNA gene RIKEN cDNA 5730437C11 gene
Cpgi13607 3 98941173 to 98941525 352 CpG island CpG island 13607
D3Mit190 3 99001749 to 99001884 135 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 190
Gm12440 3 99049822 to 99053742 3920 + lincRNA gene predicted gene 12440
Gm12441 3 99100667 to 99101154 487 - pseudogene predicted gene 12441
Gm40105 3 99110959 to 99115695 4736 + lncRNA gene predicted gene, 40105
Gm22341 3 99113155 to 99113283 128 - snoRNA gene predicted gene, 22341
Gm24216 3 99124186 to 99124302 116 - snoRNA gene predicted gene, 24216
Wars2 3 99140618 to 99221230 80612 + protein coding gene tryptophanyl tRNA synthetase 2 (mitochondrial)
Cpgi13608 3 99140878 to 99141761 883 CpG island CpG island 13608
Tssr30855 3 99141063 to 99141072 9 + TSS region transcription start site region 30855
Tssr30856 3 99141081 to 99141103 22 + TSS region transcription start site region 30856
Gm43024 3 99144603 to 99148954 4351 + sense intronic lncRNA gene predicted gene 43024
Gm18982 3 99180753 to 99181281 528 - pseudogene predicted gene, 18982
Mir6481 3 99199344 to 99199453 109 - miRNA gene microRNA 6481
Gm42717 3 99206422 to 99209884 3462 + sense intronic lncRNA gene predicted gene 42717
Cpgi13609 3 99235055 to 99235390 335 CpG island CpG island 13609
Gm38468 3 99236908 to 99239123 2215 + lncRNA gene predicted gene, 38468
D3Mit10 3 99239727 to 99239868 141 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 10
Iba2 3 99239727 to 99239868 141 QTL induction of brown adipocytes 2
Tssr30857 3 99240328 to 99240337 9 + TSS region transcription start site region 30857
Tssr30858 3 99240361 to 99240385 24 + TSS region transcription start site region 30858
Tbx15 3 99240381 to 99354259 113878 + protein coding gene T-box 15
Gm46817 3 99240655 to 99241895 1240 - lncRNA gene predicted gene, 46817
Cpgi13610 3 99240794 to 99241599 805 CpG island CpG island 13610
Cpgi13611 3 99253276 to 99254339 1063 CpG island CpG island 13611
Tssr30859 3 99253333 to 99253345 12 + TSS region transcription start site region 30859
Tssr30860 3 99253346 to 99253383 37 + TSS region transcription start site region 30860
Tssr34737 3 99253500 to 99253511 11 - TSS region transcription start site region 34737
Tssr34738 3 99253581 to 99253599 18 - TSS region transcription start site region 34738
Tssr30861 3 99253754 to 99253807 53 + TSS region transcription start site region 30861
Gm43120 3 99254698 to 99261285 6587 - antisense lncRNA gene predicted gene 43120
Cpgi13612 3 99256993 to 99257270 277 CpG island CpG island 13612
Tssr30862 3 99296502 to 99296513 11 + TSS region transcription start site region 30862
Tssr30863 3 99296520 to 99296531 11 + TSS region transcription start site region 30863
Tssr982 3 99296545 to 99296554 9 + TSS region transcription start site region 982
Tssr30864 3 99316488 to 99316503 15 + TSS region transcription start site region 30864
Tssr34739 3 99352154 to 99352172 18 - TSS region transcription start site region 34739
Tssr30865 3 99352674 to 99352689 15 + TSS region transcription start site region 30865
Gm12449 3 99463592 to 99463825 233 - pseudogene predicted gene 12449
M6pr-ps 3 99500550 to 99501379 829 + pseudogene mannose-6-phosphate receptor, pseudogene
Gm12448 3 99544408 to 99545062 654 - pseudogene predicted gene 12448
Gm22505 3 99707740 to 99707847 107 - snRNA gene predicted gene, 22505
D3Mit283 3 99755175 to 99755321 146 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 283
D3Jpk1 3 99798719 to 99798982 263 DNA segment DNA segment, Chr 3, Japan, Kominami 1
Tssr30866 3 99885383 to 99885419 36 + TSS region transcription start site region 30866
Tssr30867 3 99885425 to 99885439 14 + TSS region transcription start site region 30867
Tssr30868 3 99885448 to 99885488 40 + TSS region transcription start site region 30868
Tssr30869 3 99968920 to 99968923 3 + TSS region transcription start site region 30869
Tssr30870 3 99981265 to 99981303 38 + TSS region transcription start site region 30870
Tssr30871 3 99981316 to 99981338 22 + TSS region transcription start site region 30871
Tssr34740 3 99981317 to 99981327 10 - TSS region transcription start site region 34740
Tssr30872 3 100008322 to 100008323 1 + TSS region transcription start site region 30872
Rpl36-ps7 3 100008360 to 100008674 314 + pseudogene ribosomal protein L36, pseudogene 7
Tra2b-ps 3 100078477 to 100078644 167 - pseudogene transformer 2 beta, pseudogene
Spag17os 3 100100684 to 100106895 6211 - antisense lncRNA gene sperm associated antigen 17, opposite strand
Wdr3 3 100138180 to 100162403 24223 - protein coding gene WD repeat domain 3
Tssr34741 3 100141713 to 100141725 12 - TSS region transcription start site region 34741
Spag17 3 100143322 to 99885417 -257905 + protein coding gene sperm associated antigen 17
Cpgi13613 3 100161983 to 100162988 1005 CpG island CpG island 13613
Tssr34742 3 100162364 to 100162414 50 - TSS region transcription start site region 34742
Tssr30873 3 100162454 to 100162536 82 + TSS region transcription start site region 30873
Gdap2 3 100162463 to 100206989 44526 + protein coding gene ganglioside-induced differentiation-associated-protein 2
Tssr30874 3 100162554 to 100162565 11 + TSS region transcription start site region 30874
Gm25802 3 100303288 to 100303364 76 + snoRNA gene predicted gene, 25802