Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:97735030-98825036

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde4dip 3 97689828 to 97888707 198879 - protein coding gene phosphodiesterase 4D interacting protein (myomegalin)
Gm31305 3 97730339 to 97736166 5827 + antisense lncRNA gene predicted gene, 31305
Tssr34669 3 97735511 to 97735552 41 - TSS region transcription start site region 34669
Gm46816 3 97749032 to 97751074 2042 + lncRNA gene predicted gene, 46816
Cpgi13594 3 97751685 to 97751936 251 CpG island CpG island 13594
Tssr34670 3 97755490 to 97755494 4 - TSS region transcription start site region 34670
A630078F23Rik 3 97761522 to 97762771 1249 unclassified gene RIKEN cDNA A630078F23 gene
Tssr34671 3 97762734 to 97762739 5 - TSS region transcription start site region 34671
Cpgi13595 3 97767019 to 97768559 1540 CpG island CpG island 13595
Tssr34672 3 97767689 to 97767784 95 - TSS region transcription start site region 34672
Tssr34673 3 97767916 to 97768024 108 - TSS region transcription start site region 34673
Tssr34674 3 97779262 to 97779266 4 - TSS region transcription start site region 34674
Gm18823 3 97787073 to 97787849 776 - pseudogene predicted gene, 18823
D3Mit41 3 97791322 to 97791530 208 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 41
D3Mit233 3 97798558 to 97798846 288 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 233
Cpgi13596 3 97824196 to 97824643 447 CpG island CpG island 13596
Tssr34675 3 97824494 to 97824508 14 - TSS region transcription start site region 34675
Tssr34676 3 97824510 to 97824546 36 - TSS region transcription start site region 34676
Cpgi13597 3 97867730 to 97868517 787 CpG island CpG island 13597
Tssr34677 3 97868066 to 97868077 11 - TSS region transcription start site region 34677
Tssr34678 3 97868146 to 97868157 11 - TSS region transcription start site region 34678
Tssr34679 3 97868164 to 97868179 15 - TSS region transcription start site region 34679
Tssr34680 3 97868191 to 97868204 13 - TSS region transcription start site region 34680
Tssr34681 3 97868223 to 97868228 5 - TSS region transcription start site region 34681
Tssr34682 3 97868242 to 97868261 19 - TSS region transcription start site region 34682
Tssr34683 3 97868270 to 97868281 11 - TSS region transcription start site region 34683
Tssr34684 3 97869689 to 97869693 4 - TSS region transcription start site region 34684
Cpgi13598 3 97888175 to 97888910 735 CpG island CpG island 13598
Tssr34685 3 97888628 to 97888647 19 - TSS region transcription start site region 34685
Tssr34686 3 97888686 to 97888819 133 - TSS region transcription start site region 34686
Tssr34687 3 97888827 to 97888845 18 - TSS region transcription start site region 34687
Tssr34688 3 97888911 to 97888929 18 - TSS region transcription start site region 34688
Gm15999 3 97892231 to 97901089 8858 - lincRNA gene predicted gene 15999
Cpgi13599 3 97901096 to 97901571 475 CpG island CpG island 13599
Tssr30804 3 97901199 to 97901250 51 + TSS region transcription start site region 30804
Sec22b 3 97901227 to 97922318 21091 + protein coding gene SEC22 homolog B, vesicle trafficking protein
Tssr30805 3 97922188 to 97922242 54 + TSS region transcription start site region 30805
Gm5544 3 97930173 to 97967018 36845 + lincRNA gene predicted gene 5544
Tssr30806 3 97930275 to 97930284 9 + TSS region transcription start site region 30806
Tssr30807 3 97930394 to 97930422 28 + TSS region transcription start site region 30807
Tssr34689 3 97931658 to 97931718 60 - TSS region transcription start site region 34689
Tssr34690 3 97931720 to 97931746 26 - TSS region transcription start site region 34690
Tssr30808 3 97978922 to 97978986 64 + TSS region transcription start site region 30808
Tssr30809 3 97992465 to 97992469 4 + TSS region transcription start site region 30809
Tssr34691 3 97994938 to 97994963 25 - TSS region transcription start site region 34691
Tssr975 3 97998416 to 97998425 9 - TSS region transcription start site region 975
D3Mit298.2 3 98010743 to 98010858 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 298.2
Cpgi13600 3 98013007 to 98014283 1276 CpG island CpG island 13600
Tssr30810 3 98013483 to 98013502 19 + TSS region transcription start site region 30810
Tssr30811 3 98013503 to 98013547 44 + TSS region transcription start site region 30811
Notch2 3 98013538 to 98150367 136829 + protein coding gene notch 2
Tssr30812 3 98013550 to 98013574 24 + TSS region transcription start site region 30812
Tssr30813 3 98013592 to 98013609 17 + TSS region transcription start site region 30813
Tssr30814 3 98013620 to 98013631 11 + TSS region transcription start site region 30814
Gm40103 3 98022306 to 98026882 4576 - lncRNA gene predicted gene, 40103
Cpgi13601 3 98024433 to 98024593 160 CpG island CpG island 13601
Gm42819 3 98030687 to 98035807 5120 + unclassified gene predicted gene 42819
Tssr34692 3 98032354 to 98032359 5 - TSS region transcription start site region 34692
Tssr30815 3 98037439 to 98037443 4 + TSS region transcription start site region 30815
Tssr30816 3 98045087 to 98045090 3 + TSS region transcription start site region 30816
Tssr34693 3 98069339 to 98069351 12 - TSS region transcription start site region 34693
Tssr30817 3 98109199 to 98109218 19 + TSS region transcription start site region 30817
Tssr30818 3 98114358 to 98114377 19 + TSS region transcription start site region 30818
Gm42820 3 98121588 to 98124650 3062 + unclassified gene predicted gene 42820
Tssr30819 3 98127009 to 98127031 22 + TSS region transcription start site region 30819
Tssr30820 3 98127092 to 98127117 25 + TSS region transcription start site region 30820
Tssr30821 3 98146450 to 98146480 30 + TSS region transcription start site region 30821
Tssr30822 3 98147167 to 98147178 11 + TSS region transcription start site region 30822
Tssr30823 3 98149082 to 98149109 27 + TSS region transcription start site region 30823
Tssr30824 3 98149803 to 98149805 2 + TSS region transcription start site region 30824
Tssr30825 3 98149855 to 98149876 21 + TSS region transcription start site region 30825
Tssr30826 3 98160623 to 98160639 16 + TSS region transcription start site region 30826
Adam30 3 98160634 to 98164169 3535 + protein coding gene a disintegrin and metallopeptidase domain 30
Tssr30827 3 98160640 to 98160651 11 + TSS region transcription start site region 30827
Pcfm3 3 98177336 to 98177481 145 QTL periosteal circumference and femur length 3
D3Mit213 3 98177336 to 98177481 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 213
Gm9771 3 98189966 to 98191102 1136 - pseudogene predicted gene 9771
Gm40104 3 98202347 to 98206760 4413 + lncRNA gene predicted gene, 40104
Tssr976 3 98221753 to 98221756 3 + TSS region transcription start site region 976
Tssr30828 3 98222148 to 98222164 16 + TSS region transcription start site region 30828
Reg4 3 98222156 to 98236748 14592 + protein coding gene regenerating islet-derived family, member 4
Cpgi13602 3 98222269 to 98222438 169 CpG island CpG island 13602
Gm42821 3 98248599 to 98249087 488 + pseudogene predicted gene 42821
Tssr30829 3 98279930 to 98279952 22 + TSS region transcription start site region 30829
Tssr30830 3 98280030 to 98280036 6 + TSS region transcription start site region 30830
Tssr30831 3 98280427 to 98280444 17 + TSS region transcription start site region 30831
Hmgcs2 3 98280435 to 98310738 30303 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
Tssr30832 3 98281475 to 98281492 17 + TSS region transcription start site region 30832
Gm43189 3 98286988 to 98290056 3068 + sense intronic lncRNA gene predicted gene 43189
Tssr30833 3 98287007 to 98287008 1 + TSS region transcription start site region 30833
Tssr30834 3 98290891 to 98290907 16 + TSS region transcription start site region 30834
Tssr30835 3 98291115 to 98291126 11 + TSS region transcription start site region 30835
Tssr30836 3 98291251 to 98291264 13 + TSS region transcription start site region 30836
Tssr30837 3 98291284 to 98291299 15 + TSS region transcription start site region 30837
Tssr30838 3 98299108 to 98299131 23 + TSS region transcription start site region 30838
Tssr30839 3 98299171 to 98299178 7 + TSS region transcription start site region 30839
Tssr30840 3 98299206 to 98299226 20 + TSS region transcription start site region 30840
Tssr30841 3 98302609 to 98302637 28 + TSS region transcription start site region 30841
Tssr30842 3 98309023 to 98309042 19 + TSS region transcription start site region 30842
Tssr30843 3 98309088 to 98309099 11 + TSS region transcription start site region 30843
Tssr30844 3 98309155 to 98309169 14 + TSS region transcription start site region 30844
Tssr30845 3 98310024 to 98310046 22 + TSS region transcription start site region 30845
Phgdh 3 98313171 to 98339969 26798 - protein coding gene 3-phosphoglycerate dehydrogenase
Tssr34694 3 98314999 to 98315003 4 - TSS region transcription start site region 34694
Tssr34695 3 98319033 to 98319036 3 - TSS region transcription start site region 34695
Tssr34696 3 98335652 to 98335656 4 - TSS region transcription start site region 34696
Cpgi13603 3 98338807 to 98339703 896 CpG island CpG island 13603
Tssr34697 3 98339921 to 98339945 24 - TSS region transcription start site region 34697
Gm31420 3 98351513 to 98354968 3455 + lncRNA gene predicted gene, 31420
Tssr977 3 98352168 to 98352173 5 - TSS region transcription start site region 977
Tssr34698 3 98352176 to 98352184 8 - TSS region transcription start site region 34698
Zfp697 3 98381339 to 98431951 50612 + protein coding gene zinc finger protein 697
Cpgi13604 3 98382159 to 98383226 1067 CpG island CpG island 13604
Tssr34699 3 98382379 to 98382421 42 - TSS region transcription start site region 34699
Tssr30846 3 98382438 to 98382520 82 + TSS region transcription start site region 30846
Tssr30847 3 98382538 to 98382553 15 + TSS region transcription start site region 30847
Cpgi13605 3 98427179 to 98428737 1558 CpG island CpG island 13605
Tssr30848 3 98427772 to 98427793 21 + TSS region transcription start site region 30848
Gm4450 3 98445675 to 98457126 11451 - protein coding gene predicted gene 4450
Gm43190 3 98447198 to 98448976 1778 - sense intronic lncRNA gene predicted gene 43190
Gm19210 3 98469491 to 98473206 3715 - pseudogene predicted gene, 19210
Hsd3b4 3 98499071 to 98510514 11443 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
Gm19211 3 98522948 to 98526683 3735 - pseudogene predicted gene, 19211
Gm10681 3 98552542 to 98564050 11508 - protein coding gene predicted gene 10681
Gm5853 3 98579767 to 98580398 631 - pseudogene predicted gene 5853
Tssr34700 3 98580550 to 98580555 5 - TSS region transcription start site region 34700
Gm9678 3 98581153 to 98588290 7137 - pseudogene predicted gene 9678
Tssr978 3 98592431 to 98592432 1 + TSS region transcription start site region 978
Tssr30849 3 98599619 to 98599628 9 + TSS region transcription start site region 30849
Tssr30850 3 98600886 to 98600899 13 + TSS region transcription start site region 30850
Hsd3b5 3 98618634 to 98630252 11618 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5
Tssr34701 3 98645518 to 98645564 46 - TSS region transcription start site region 34701
Gm12399 3 98669873 to 98672293 2420 - pseudogene predicted gene 12399
Gm12400 3 98680832 to 98688182 7350 - pseudogene predicted gene 12400
Tssr30851 3 98684923 to 98684932 9 + TSS region transcription start site region 30851
Hsd3b2 3 98711107 to 98724595 13488 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
Tssr34702 3 98723893 to 98723925 32 - TSS region transcription start site region 34702
Tssr34703 3 98724554 to 98724577 23 - TSS region transcription start site region 34703
Hsd3b3 3 98741523 to 98763127 21604 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3
Tssr34704 3 98741854 to 98741866 12 - TSS region transcription start site region 34704
Tssr34705 3 98760552 to 98760573 21 - TSS region transcription start site region 34705
Hsd3b6 3 98805504 to 98814443 8939 - protein coding gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
Tssr34706 3 98814434 to 98814449 15 - TSS region transcription start site region 34706
Gm12427 3 98818082 to 98820019 1937 - pseudogene predicted gene 12427
Cpgi13606 3 98820912 to 98821124 212 CpG island CpG island 13606
Gm12428 3 98821038 to 98821764 726 + pseudogene predicted gene 12428
Nctm1 3 100465744 to 97791322 -2674422 QTL Nakano cataract modifier 1