Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96838876-97710064

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdzk1 3 96829384 to 96870926 41542 + protein coding gene PDZ domain containing 1
Gpr89 3 96868298 to 96905343 37045 - protein coding gene G protein-coupled receptor 89
Cpgi13582 3 96904685 to 96905446 761 CpG island CpG island 13582
Tssr34647 3 96905247 to 96905258 11 - TSS region transcription start site region 34647
Tssr34648 3 96905273 to 96905292 19 - TSS region transcription start site region 34648
Tssr34649 3 96905294 to 96905341 47 - TSS region transcription start site region 34649
Gja8 3 96913566 to 96926020 12454 - protein coding gene gap junction protein, alpha 8
Cpgi13583 3 96919764 to 96920294 530 CpG island CpG island 13583
Tssr34650 3 96925919 to 96925941 22 - TSS region transcription start site region 34650
Tssr34651 3 96926056 to 96926067 11 - TSS region transcription start site region 34651
Tssr30780 3 96975392 to 96975399 7 + TSS region transcription start site region 30780
9230114J08Rik 3 96998722 to 97000771 2049 - antisense lncRNA gene RIKEN cDNA 9230114J08 gene
Tssr30781 3 97032394 to 97032408 14 + TSS region transcription start site region 30781
Gja5 3 97032402 to 97053634 21232 + protein coding gene gap junction protein, alpha 5
Tssr30782 3 97032423 to 97032432 9 + TSS region transcription start site region 30782
Tssr30783 3 97032437 to 97032448 11 + TSS region transcription start site region 30783
4930573H18Rik 3 97046656 to 97092785 46129 - antisense lncRNA gene RIKEN cDNA 4930573H18 gene
Gm31120 3 97074153 to 97076020 1867 + lncRNA gene predicted gene, 31120
D3Mit100 3 97081705 to 97081845 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 100
Gm31183 3 97101092 to 97102959 1867 + lncRNA gene predicted gene, 31183
Gm43222 3 97125511 to 97126113 602 - pseudogene predicted gene 43222
Gm24435 3 97140552 to 97140661 109 - snRNA gene predicted gene, 24435
n-TEctc12 3 97158085 to 97158156 71 + tRNA gene nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
Cpgi13584 3 97158720 to 97159434 714 CpG island CpG island 13584
Acp6 3 97158751 to 97176576 17825 + protein coding gene acid phosphatase 6, lysophosphatidic
Tssr30784 3 97158767 to 97158820 53 + TSS region transcription start site region 30784
Tssr30785 3 97158823 to 97158845 22 + TSS region transcription start site region 30785
Tssr30786 3 97158852 to 97158870 18 + TSS region transcription start site region 30786
Tssr30787 3 97159010 to 97159037 27 + TSS region transcription start site region 30787
Tssr30788 3 97159047 to 97159064 17 + TSS region transcription start site region 30788
Tssr30789 3 97159079 to 97159101 22 + TSS region transcription start site region 30789
Tssr30790 3 97162989 to 97163002 13 + TSS region transcription start site region 30790
Bcl9 3 97203662 to 97297917 94255 - protein coding gene B cell CLL/lymphoma 9
Tssr34652 3 97204474 to 97204483 9 - TSS region transcription start site region 34652
Tssr34653 3 97208904 to 97208915 11 - TSS region transcription start site region 34653
Cpgi13585 3 97226831 to 97228234 1403 CpG island CpG island 13585
Tssr34654 3 97227383 to 97227421 38 - TSS region transcription start site region 34654
Tssr34655 3 97242529 to 97242532 3 - TSS region transcription start site region 34655
Gm42508 3 97262355 to 97265646 3291 + unclassified gene predicted gene 42508
9230110I02Rik 3 97270631 to 97271622 991 unclassified non-coding RNA gene RIKEN cDNA 9230110I02 gene
Gm43073 3 97273876 to 97275064 1188 - unclassified gene predicted gene 43073
D3Mit157 3 97279136 to 97279285 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157
D3Mit157.2 3 97279267 to 97279383 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157.2
Tssr34656 3 97297806 to 97297833 27 - TSS region transcription start site region 34656
Tssr34657 3 97297852 to 97297916 64 - TSS region transcription start site region 34657
Tssr34658 3 97297921 to 97297938 17 - TSS region transcription start site region 34658
Cpgi13586 3 97298158 to 97298410 252 CpG island CpG island 13586
Cpgi13587 3 97311517 to 97311726 209 CpG island CpG island 13587
Cpgi13588 3 97312112 to 97312355 243 CpG island CpG island 13588
Cpgi13589 3 97324122 to 97324411 289 CpG island CpG island 13589
Gm40101 3 97330420 to 97332948 2528 + lncRNA gene predicted gene, 40101
Cpgi13590 3 97331500 to 97331737 237 CpG island CpG island 13590
Olfr1402 3 97410217 to 97411179 962 - protein coding gene olfactory receptor 1402
Tssr34659 3 97546279 to 97546317 38 - TSS region transcription start site region 34659
Gm40102 3 97546303 to 97572590 26287 + lncRNA gene predicted gene, 40102
Chd1l 3 97560742 to 97610203 49461 - protein coding gene chromodomain helicase DNA binding protein 1-like
Cpgi13591 3 97609627 to 97610403 776 CpG island CpG island 13591
Gm43075 3 97609932 to 97613836 3904 + unclassified gene predicted gene 43075
Tssr34660 3 97610156 to 97610222 66 - TSS region transcription start site region 34660
Fmo5 3 97628804 to 97655282 26478 + protein coding gene flavin containing monooxygenase 5
Tssr30791 3 97628844 to 97628864 20 + TSS region transcription start site region 30791
Tssr30792 3 97633158 to 97633169 11 + TSS region transcription start site region 30792
Tssr30793 3 97651674 to 97651694 20 + TSS region transcription start site region 30793
Tssr30794 3 97651751 to 97651765 14 + TSS region transcription start site region 30794
Tssr30795 3 97651785 to 97651797 12 + TSS region transcription start site region 30795
Tssr30796 3 97651822 to 97651830 8 + TSS region transcription start site region 30796
Tssr30797 3 97651853 to 97651865 12 + TSS region transcription start site region 30797
Tssr974 3 97651889 to 97651920 31 + TSS region transcription start site region 974
Tssr30798 3 97651972 to 97652046 74 + TSS region transcription start site region 30798
Cpgi13592 3 97657858 to 97658985 1127 CpG island CpG island 13592
Prkab2 3 97658212 to 97673812 15600 + protein coding gene protein kinase, AMP-activated, beta 2 non-catalytic subunit
Tssr30799 3 97658291 to 97658339 48 + TSS region transcription start site region 30799
Tssr30800 3 97658383 to 97658392 9 + TSS region transcription start site region 30800
Tssr30801 3 97658555 to 97658615 60 + TSS region transcription start site region 30801
Tssr30802 3 97658616 to 97658628 12 + TSS region transcription start site region 30802
Gm17651 3 97673031 to 97674694 1663 - protein coding gene predicted gene, 17651
Gm31242 3 97680336 to 97682061 1725 + lncRNA gene predicted gene, 31242
Cpgi13593 3 97681158 to 97681949 791 CpG island CpG island 13593
n-TQctg2 3 97681459 to 97681530 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon CTG)
Pde4dip 3 97689828 to 97888707 198879 - protein coding gene phosphodiesterase 4D interacting protein (myomegalin)
Mir7225 3 97690509 to 97690562 53 - miRNA gene microRNA 7225
Tssr30803 3 97690829 to 97690839 10 + TSS region transcription start site region 30803
Tssr34661 3 97697130 to 97697144 14 - TSS region transcription start site region 34661
Tssr34662 3 97699176 to 97699206 30 - TSS region transcription start site region 34662
Tssr34663 3 97702602 to 97702618 16 - TSS region transcription start site region 34663
Tssr34664 3 97702652 to 97702664 12 - TSS region transcription start site region 34664
Tssr34665 3 97702678 to 97702685 7 - TSS region transcription start site region 34665
Tssr34666 3 97702866 to 97702903 37 - TSS region transcription start site region 34666
Tssr34667 3 97703665 to 97703704 39 - TSS region transcription start site region 34667