Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96838722-97160771

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdzk1 3 96829384 to 96870926 41542 + protein coding gene PDZ domain containing 1
Gpr89 3 96868298 to 96905343 37045 - protein coding gene G protein-coupled receptor 89
Cpgi13582 3 96904685 to 96905446 761 CpG island CpG island 13582
Tssr34647 3 96905247 to 96905258 11 - TSS region transcription start site region 34647
Tssr34648 3 96905273 to 96905292 19 - TSS region transcription start site region 34648
Tssr34649 3 96905294 to 96905341 47 - TSS region transcription start site region 34649
Gja8 3 96913566 to 96926020 12454 - protein coding gene gap junction protein, alpha 8
Cpgi13583 3 96919764 to 96920294 530 CpG island CpG island 13583
Tssr34650 3 96925919 to 96925941 22 - TSS region transcription start site region 34650
Tssr34651 3 96926056 to 96926067 11 - TSS region transcription start site region 34651
Tssr30780 3 96975392 to 96975399 7 + TSS region transcription start site region 30780
9230114J08Rik 3 96998722 to 97000771 2049 - antisense lncRNA gene RIKEN cDNA 9230114J08 gene
Tssr30781 3 97032394 to 97032408 14 + TSS region transcription start site region 30781
Gja5 3 97032402 to 97053634 21232 + protein coding gene gap junction protein, alpha 5
Tssr30782 3 97032423 to 97032432 9 + TSS region transcription start site region 30782
Tssr30783 3 97032437 to 97032448 11 + TSS region transcription start site region 30783
4930573H18Rik 3 97046656 to 97092785 46129 - antisense lncRNA gene RIKEN cDNA 4930573H18 gene
Gm31120 3 97074153 to 97076020 1867 + lncRNA gene predicted gene, 31120
D3Mit100 3 97081705 to 97081845 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 100
Gm31183 3 97101092 to 97102959 1867 + lncRNA gene predicted gene, 31183
Gm43222 3 97125511 to 97126113 602 - pseudogene predicted gene 43222
Gm24435 3 97140552 to 97140661 109 - snRNA gene predicted gene, 24435
n-TEctc12 3 97158085 to 97158156 71 + tRNA gene nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
Cpgi13584 3 97158720 to 97159434 714 CpG island CpG island 13584
Acp6 3 97158751 to 97176576 17825 + protein coding gene acid phosphatase 6, lysophosphatidic
Tssr30784 3 97158767 to 97158820 53 + TSS region transcription start site region 30784
Tssr30785 3 97158823 to 97158845 22 + TSS region transcription start site region 30785
Tssr30786 3 97158852 to 97158870 18 + TSS region transcription start site region 30786
Tssr30787 3 97159010 to 97159037 27 + TSS region transcription start site region 30787
Tssr30788 3 97159047 to 97159064 17 + TSS region transcription start site region 30788
Tssr30789 3 97159079 to 97159101 22 + TSS region transcription start site region 30789