Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96780217-98041179

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf115 3 96727585 to 96791155 63570 + protein coding gene ring finger protein 115
Gm42782 3 96784325 to 96784846 521 + unclassified gene predicted gene 42782
Tssr30769 3 96795921 to 96795934 13 + TSS region transcription start site region 30769
Cd160 3 96798763 to 96829351 30588 - protein coding gene CD160 antigen
Tssr34643 3 96814518 to 96814532 14 - TSS region transcription start site region 34643
Tssr973 3 96824084 to 96824089 5 + TSS region transcription start site region 973
Tssr30770 3 96824104 to 96824123 19 + TSS region transcription start site region 30770
Pdzk1 3 96829384 to 96870926 41542 + protein coding gene PDZ domain containing 1
Tssr30771 3 96829427 to 96829435 8 + TSS region transcription start site region 30771
Tssr30772 3 96829459 to 96829474 15 + TSS region transcription start site region 30772
Tssr30773 3 96829493 to 96829501 8 + TSS region transcription start site region 30773
4930442L01Rik 3 96829826 to 96832070 2244 - antisense lncRNA gene RIKEN cDNA 4930442L01 gene
Tssr30774 3 96830069 to 96830115 46 + TSS region transcription start site region 30774
Tssr30775 3 96830123 to 96830139 16 + TSS region transcription start site region 30775
Tssr34644 3 96830970 to 96830975 5 - TSS region transcription start site region 34644
Tssr34645 3 96832049 to 96832081 32 - TSS region transcription start site region 34645
Tssr34646 3 96832090 to 96832095 5 - TSS region transcription start site region 34646
Tssr30776 3 96832142 to 96832181 39 + TSS region transcription start site region 30776
Tssr30777 3 96832182 to 96832191 9 + TSS region transcription start site region 30777
Tssr30778 3 96833218 to 96833257 39 + TSS region transcription start site region 30778
Tssr30779 3 96833265 to 96833276 11 + TSS region transcription start site region 30779
Gpr89 3 96868298 to 96905343 37045 - protein coding gene G protein-coupled receptor 89
Cpgi13582 3 96904685 to 96905446 761 CpG island CpG island 13582
Tssr34647 3 96905247 to 96905258 11 - TSS region transcription start site region 34647
Tssr34648 3 96905273 to 96905292 19 - TSS region transcription start site region 34648
Tssr34649 3 96905294 to 96905341 47 - TSS region transcription start site region 34649
Gja8 3 96913566 to 96926020 12454 - protein coding gene gap junction protein, alpha 8
Cpgi13583 3 96919764 to 96920294 530 CpG island CpG island 13583
Tssr34650 3 96925919 to 96925941 22 - TSS region transcription start site region 34650
Tssr34651 3 96926056 to 96926067 11 - TSS region transcription start site region 34651
Tssr30780 3 96975392 to 96975399 7 + TSS region transcription start site region 30780
9230114J08Rik 3 96998722 to 97000771 2049 - antisense lncRNA gene RIKEN cDNA 9230114J08 gene
Tssr30781 3 97032394 to 97032408 14 + TSS region transcription start site region 30781
Gja5 3 97032402 to 97053634 21232 + protein coding gene gap junction protein, alpha 5
Tssr30782 3 97032423 to 97032432 9 + TSS region transcription start site region 30782
Tssr30783 3 97032437 to 97032448 11 + TSS region transcription start site region 30783
4930573H18Rik 3 97046656 to 97092785 46129 - antisense lncRNA gene RIKEN cDNA 4930573H18 gene
Gm31120 3 97074153 to 97076020 1867 + lncRNA gene predicted gene, 31120
D3Mit100 3 97081705 to 97081845 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 100
Gm31183 3 97101092 to 97102959 1867 + lncRNA gene predicted gene, 31183
Gm43222 3 97125511 to 97126113 602 - pseudogene predicted gene 43222
Gm24435 3 97140552 to 97140661 109 - snRNA gene predicted gene, 24435
n-TEctc12 3 97158085 to 97158156 71 + tRNA gene nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
Cpgi13584 3 97158720 to 97159434 714 CpG island CpG island 13584
Acp6 3 97158751 to 97176576 17825 + protein coding gene acid phosphatase 6, lysophosphatidic
Tssr30784 3 97158767 to 97158820 53 + TSS region transcription start site region 30784
Tssr30785 3 97158823 to 97158845 22 + TSS region transcription start site region 30785
Tssr30786 3 97158852 to 97158870 18 + TSS region transcription start site region 30786
Tssr30787 3 97159010 to 97159037 27 + TSS region transcription start site region 30787
Tssr30788 3 97159047 to 97159064 17 + TSS region transcription start site region 30788
Tssr30789 3 97159079 to 97159101 22 + TSS region transcription start site region 30789
Tssr30790 3 97162989 to 97163002 13 + TSS region transcription start site region 30790
Bcl9 3 97203662 to 97297917 94255 - protein coding gene B cell CLL/lymphoma 9
Tssr34652 3 97204474 to 97204483 9 - TSS region transcription start site region 34652
Tssr34653 3 97208904 to 97208915 11 - TSS region transcription start site region 34653
Cpgi13585 3 97226831 to 97228234 1403 CpG island CpG island 13585
Tssr34654 3 97227383 to 97227421 38 - TSS region transcription start site region 34654
Tssr34655 3 97242529 to 97242532 3 - TSS region transcription start site region 34655
Gm42508 3 97262355 to 97265646 3291 + unclassified gene predicted gene 42508
9230110I02Rik 3 97270631 to 97271622 991 unclassified non-coding RNA gene RIKEN cDNA 9230110I02 gene
Gm43073 3 97273876 to 97275064 1188 - unclassified gene predicted gene 43073
D3Mit157 3 97279136 to 97279285 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157
D3Mit157.2 3 97279267 to 97279383 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157.2
Tssr34656 3 97297806 to 97297833 27 - TSS region transcription start site region 34656
Tssr34657 3 97297852 to 97297916 64 - TSS region transcription start site region 34657
Tssr34658 3 97297921 to 97297938 17 - TSS region transcription start site region 34658
Cpgi13586 3 97298158 to 97298410 252 CpG island CpG island 13586
Cpgi13587 3 97311517 to 97311726 209 CpG island CpG island 13587
Cpgi13588 3 97312112 to 97312355 243 CpG island CpG island 13588
Cpgi13589 3 97324122 to 97324411 289 CpG island CpG island 13589
Gm40101 3 97330420 to 97332948 2528 + lncRNA gene predicted gene, 40101
Cpgi13590 3 97331500 to 97331737 237 CpG island CpG island 13590
Olfr1402 3 97410217 to 97411179 962 - protein coding gene olfactory receptor 1402
Tssr34659 3 97546279 to 97546317 38 - TSS region transcription start site region 34659
Gm40102 3 97546303 to 97572590 26287 + lncRNA gene predicted gene, 40102
Chd1l 3 97560742 to 97610203 49461 - protein coding gene chromodomain helicase DNA binding protein 1-like
Cpgi13591 3 97609627 to 97610403 776 CpG island CpG island 13591
Gm43075 3 97609932 to 97613836 3904 + unclassified gene predicted gene 43075
Tssr34660 3 97610156 to 97610222 66 - TSS region transcription start site region 34660
Fmo5 3 97628804 to 97655282 26478 + protein coding gene flavin containing monooxygenase 5
Tssr30791 3 97628844 to 97628864 20 + TSS region transcription start site region 30791
Tssr30792 3 97633158 to 97633169 11 + TSS region transcription start site region 30792
Tssr30793 3 97651674 to 97651694 20 + TSS region transcription start site region 30793
Tssr30794 3 97651751 to 97651765 14 + TSS region transcription start site region 30794
Tssr30795 3 97651785 to 97651797 12 + TSS region transcription start site region 30795
Tssr30796 3 97651822 to 97651830 8 + TSS region transcription start site region 30796
Tssr30797 3 97651853 to 97651865 12 + TSS region transcription start site region 30797
Tssr974 3 97651889 to 97651920 31 + TSS region transcription start site region 974
Tssr30798 3 97651972 to 97652046 74 + TSS region transcription start site region 30798
Cpgi13592 3 97657858 to 97658985 1127 CpG island CpG island 13592
Prkab2 3 97658212 to 97673812 15600 + protein coding gene protein kinase, AMP-activated, beta 2 non-catalytic subunit
Tssr30799 3 97658291 to 97658339 48 + TSS region transcription start site region 30799
Tssr30800 3 97658383 to 97658392 9 + TSS region transcription start site region 30800
Tssr30801 3 97658555 to 97658615 60 + TSS region transcription start site region 30801
Tssr30802 3 97658616 to 97658628 12 + TSS region transcription start site region 30802
Gm17651 3 97673031 to 97674694 1663 - protein coding gene predicted gene, 17651
Gm31242 3 97680336 to 97682061 1725 + lncRNA gene predicted gene, 31242
Cpgi13593 3 97681158 to 97681949 791 CpG island CpG island 13593
n-TQctg2 3 97681459 to 97681530 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon CTG)
Pde4dip 3 97689828 to 97888707 198879 - protein coding gene phosphodiesterase 4D interacting protein (myomegalin)
Mir7225 3 97690509 to 97690562 53 - miRNA gene microRNA 7225
Tssr30803 3 97690829 to 97690839 10 + TSS region transcription start site region 30803
Tssr34661 3 97697130 to 97697144 14 - TSS region transcription start site region 34661
Tssr34662 3 97699176 to 97699206 30 - TSS region transcription start site region 34662
Tssr34663 3 97702602 to 97702618 16 - TSS region transcription start site region 34663
Tssr34664 3 97702652 to 97702664 12 - TSS region transcription start site region 34664
Tssr34665 3 97702678 to 97702685 7 - TSS region transcription start site region 34665
Tssr34666 3 97702866 to 97702903 37 - TSS region transcription start site region 34666
Tssr34667 3 97703665 to 97703704 39 - TSS region transcription start site region 34667
Tssr34668 3 97713226 to 97713230 4 - TSS region transcription start site region 34668
Gm31305 3 97730339 to 97736166 5827 + antisense lncRNA gene predicted gene, 31305
Tssr34669 3 97735511 to 97735552 41 - TSS region transcription start site region 34669
Gm46816 3 97749032 to 97751074 2042 + lncRNA gene predicted gene, 46816
Cpgi13594 3 97751685 to 97751936 251 CpG island CpG island 13594
Tssr34670 3 97755490 to 97755494 4 - TSS region transcription start site region 34670
A630078F23Rik 3 97761522 to 97762771 1249 unclassified gene RIKEN cDNA A630078F23 gene
Tssr34671 3 97762734 to 97762739 5 - TSS region transcription start site region 34671
Cpgi13595 3 97767019 to 97768559 1540 CpG island CpG island 13595
Tssr34672 3 97767689 to 97767784 95 - TSS region transcription start site region 34672
Tssr34673 3 97767916 to 97768024 108 - TSS region transcription start site region 34673
Tssr34674 3 97779262 to 97779266 4 - TSS region transcription start site region 34674
Gm18823 3 97787073 to 97787849 776 - pseudogene predicted gene, 18823
D3Mit41 3 97791322 to 97791530 208 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 41
D3Mit233 3 97798558 to 97798846 288 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 233
Cpgi13596 3 97824196 to 97824643 447 CpG island CpG island 13596
Tssr34675 3 97824494 to 97824508 14 - TSS region transcription start site region 34675
Tssr34676 3 97824510 to 97824546 36 - TSS region transcription start site region 34676
Cpgi13597 3 97867730 to 97868517 787 CpG island CpG island 13597
Tssr34677 3 97868066 to 97868077 11 - TSS region transcription start site region 34677
Tssr34678 3 97868146 to 97868157 11 - TSS region transcription start site region 34678
Tssr34679 3 97868164 to 97868179 15 - TSS region transcription start site region 34679
Tssr34680 3 97868191 to 97868204 13 - TSS region transcription start site region 34680
Tssr34681 3 97868223 to 97868228 5 - TSS region transcription start site region 34681
Tssr34682 3 97868242 to 97868261 19 - TSS region transcription start site region 34682
Tssr34683 3 97868270 to 97868281 11 - TSS region transcription start site region 34683
Tssr34684 3 97869689 to 97869693 4 - TSS region transcription start site region 34684
Cpgi13598 3 97888175 to 97888910 735 CpG island CpG island 13598
Tssr34685 3 97888628 to 97888647 19 - TSS region transcription start site region 34685
Tssr34686 3 97888686 to 97888819 133 - TSS region transcription start site region 34686
Tssr34687 3 97888827 to 97888845 18 - TSS region transcription start site region 34687
Tssr34688 3 97888911 to 97888929 18 - TSS region transcription start site region 34688
Gm15999 3 97892231 to 97901089 8858 - lincRNA gene predicted gene 15999
Cpgi13599 3 97901096 to 97901571 475 CpG island CpG island 13599
Tssr30804 3 97901199 to 97901250 51 + TSS region transcription start site region 30804
Sec22b 3 97901227 to 97922318 21091 + protein coding gene SEC22 homolog B, vesicle trafficking protein
Tssr30805 3 97922188 to 97922242 54 + TSS region transcription start site region 30805
Gm5544 3 97930173 to 97967018 36845 + lincRNA gene predicted gene 5544
Tssr30806 3 97930275 to 97930284 9 + TSS region transcription start site region 30806
Tssr30807 3 97930394 to 97930422 28 + TSS region transcription start site region 30807
Tssr34689 3 97931658 to 97931718 60 - TSS region transcription start site region 34689
Tssr34690 3 97931720 to 97931746 26 - TSS region transcription start site region 34690
Tssr30808 3 97978922 to 97978986 64 + TSS region transcription start site region 30808
Tssr30809 3 97992465 to 97992469 4 + TSS region transcription start site region 30809
Tssr34691 3 97994938 to 97994963 25 - TSS region transcription start site region 34691
Tssr975 3 97998416 to 97998425 9 - TSS region transcription start site region 975
D3Mit298.2 3 98010743 to 98010858 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 298.2
Cpgi13600 3 98013007 to 98014283 1276 CpG island CpG island 13600
Tssr30810 3 98013483 to 98013502 19 + TSS region transcription start site region 30810
Tssr30811 3 98013503 to 98013547 44 + TSS region transcription start site region 30811
Notch2 3 98013538 to 98150367 136829 + protein coding gene notch 2
Tssr30812 3 98013550 to 98013574 24 + TSS region transcription start site region 30812
Tssr30813 3 98013592 to 98013609 17 + TSS region transcription start site region 30813
Tssr30814 3 98013620 to 98013631 11 + TSS region transcription start site region 30814
Gm40103 3 98022306 to 98026882 4576 - lncRNA gene predicted gene, 40103
Cpgi13601 3 98024433 to 98024593 160 CpG island CpG island 13601
Gm42819 3 98030687 to 98035807 5120 + unclassified gene predicted gene 42819
Tssr34692 3 98032354 to 98032359 5 - TSS region transcription start site region 34692
Tssr30815 3 98037439 to 98037443 4 + TSS region transcription start site region 30815
Nctm1 3 100465744 to 97791322 -2674422 QTL Nakano cataract modifier 1