Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Polr3c | 3 | 15975 | - | protein coding gene | polymerase (RNA) III (DNA directed) polypeptide C | |
Cpgi13580 | 3 | 269 | CpG island | CpG island 13580 | ||
Gm22581 | 3 | 135 | - | snoRNA gene | predicted gene, 22581 | |
Gm42783 | 3 | 794 | - | unclassified gene | predicted gene 42783 | |
Cpgi13581 | 3 | 1091 | CpG island | CpG island 13581 | ||
Tssr34640 | 3 | 16 | - | TSS region | transcription start site region 34640 | |
Tssr34641 | 3 | 52 | - | TSS region | transcription start site region 34641 | |
Tssr30759 | 3 | 41 | + | TSS region | transcription start site region 30759 | |
Tssr34642 | 3 | 7 | - | TSS region | transcription start site region 34642 | |
Tssr30760 | 3 | 28 | + | TSS region | transcription start site region 30760 | |
Rnf115 | 3 | 63570 | + | protein coding gene | ring finger protein 115 | |
Tssr30761 | 3 | 7 | + | TSS region | transcription start site region 30761 | |
Tssr30762 | 3 | 67 | + | TSS region | transcription start site region 30762 | |
Tssr30763 | 3 | 27 | + | TSS region | transcription start site region 30763 | |
Tssr30764 | 3 | 4 | + | TSS region | transcription start site region 30764 | |
Tssr30765 | 3 | 8 | + | TSS region | transcription start site region 30765 | |
Tssr30766 | 3 | 46 | + | TSS region | transcription start site region 30766 | |
Tssr30767 | 3 | 11 | + | TSS region | transcription start site region 30767 | |
Tssr30768 | 3 | 37 | + | TSS region | transcription start site region 30768 | |
Gm42782 | 3 | 521 | + | unclassified gene | predicted gene 42782 | |
Tssr30769 | 3 | 13 | + | TSS region | transcription start site region 30769 | |
Cd160 | 3 | 30588 | - | protein coding gene | CD160 antigen | |
Tssr34643 | 3 | 14 | - | TSS region | transcription start site region 34643 | |
Tssr973 | 3 | 5 | + | TSS region | transcription start site region 973 | |
Tssr30770 | 3 | 19 | + | TSS region | transcription start site region 30770 | |
Pdzk1 | 3 | 41542 | + | protein coding gene | PDZ domain containing 1 | |
Tssr30771 | 3 | 8 | + | TSS region | transcription start site region 30771 | |
Tssr30772 | 3 | 15 | + | TSS region | transcription start site region 30772 | |
Tssr30773 | 3 | 8 | + | TSS region | transcription start site region 30773 | |
4930442L01Rik | 3 | 2244 | - | antisense lncRNA gene | RIKEN cDNA 4930442L01 gene | |
Tssr30774 | 3 | 46 | + | TSS region | transcription start site region 30774 | |
Tssr30775 | 3 | 16 | + | TSS region | transcription start site region 30775 | |
Tssr34644 | 3 | 5 | - | TSS region | transcription start site region 34644 | |
Tssr34645 | 3 | 32 | - | TSS region | transcription start site region 34645 | |
Tssr34646 | 3 | 5 | - | TSS region | transcription start site region 34646 | |
Tssr30776 | 3 | 39 | + | TSS region | transcription start site region 30776 | |
Tssr30777 | 3 | 9 | + | TSS region | transcription start site region 30777 | |
Tssr30778 | 3 | 39 | + | TSS region | transcription start site region 30778 | |
Tssr30779 | 3 | 11 | + | TSS region | transcription start site region 30779 | |
Gpr89 | 3 | 37045 | - | protein coding gene | G protein-coupled receptor 89 | |
Cpgi13582 | 3 | 761 | CpG island | CpG island 13582 | ||
Tssr34647 | 3 | 11 | - | TSS region | transcription start site region 34647 | |
Tssr34648 | 3 | 19 | - | TSS region | transcription start site region 34648 | |
Tssr34649 | 3 | 47 | - | TSS region | transcription start site region 34649 | |
Gja8 | 3 | 12454 | - | protein coding gene | gap junction protein, alpha 8 | |
Cpgi13583 | 3 | 530 | CpG island | CpG island 13583 | ||
Tssr34650 | 3 | 22 | - | TSS region | transcription start site region 34650 | |
Tssr34651 | 3 | 11 | - | TSS region | transcription start site region 34651 | |
Tssr30780 | 3 | 7 | + | TSS region | transcription start site region 30780 | |
9230114J08Rik | 3 | 2049 | - | antisense lncRNA gene | RIKEN cDNA 9230114J08 gene | |
Tssr30781 | 3 | 14 | + | TSS region | transcription start site region 30781 | |
Gja5 | 3 | 21232 | + | protein coding gene | gap junction protein, alpha 5 | |
Tssr30782 | 3 | 9 | + | TSS region | transcription start site region 30782 | |
Tssr30783 | 3 | 11 | + | TSS region | transcription start site region 30783 | |
4930573H18Rik | 3 | 46129 | - | antisense lncRNA gene | RIKEN cDNA 4930573H18 gene | |
Gm31120 | 3 | 1867 | + | lncRNA gene | predicted gene, 31120 | |
D3Mit100 | 3 | 140 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 100 | ||
Gm31183 | 3 | 1867 | + | lncRNA gene | predicted gene, 31183 | |
Gm43222 | 3 | 602 | - | pseudogene | predicted gene 43222 | |
Gm24435 | 3 | 109 | - | snRNA gene | predicted gene, 24435 | |
n-TEctc12 | 3 | 71 | + | tRNA gene | nuclear encoded tRNA glutamic acid 12 (anticodon CTC) | |
Cpgi13584 | 3 | 714 | CpG island | CpG island 13584 | ||
Acp6 | 3 | 17825 | + | protein coding gene | acid phosphatase 6, lysophosphatidic | |
Tssr30784 | 3 | 53 | + | TSS region | transcription start site region 30784 | |
Tssr30785 | 3 | 22 | + | TSS region | transcription start site region 30785 | |
Tssr30786 | 3 | 18 | + | TSS region | transcription start site region 30786 | |
Tssr30787 | 3 | 27 | + | TSS region | transcription start site region 30787 | |
Tssr30788 | 3 | 17 | + | TSS region | transcription start site region 30788 | |
Tssr30789 | 3 | 22 | + | TSS region | transcription start site region 30789 | |
Tssr30790 | 3 | 13 | + | TSS region | transcription start site region 30790 | |
Bcl9 | 3 | 94255 | - | protein coding gene | B cell CLL/lymphoma 9 | |
Tssr34652 | 3 | 9 | - | TSS region | transcription start site region 34652 | |
Tssr34653 | 3 | 11 | - | TSS region | transcription start site region 34653 | |
Cpgi13585 | 3 | 1403 | CpG island | CpG island 13585 | ||
Tssr34654 | 3 | 38 | - | TSS region | transcription start site region 34654 | |
Tssr34655 | 3 | 3 | - | TSS region | transcription start site region 34655 | |
Gm42508 | 3 | 3291 | + | unclassified gene | predicted gene 42508 | |
9230110I02Rik | 3 | 991 | unclassified non-coding RNA gene | RIKEN cDNA 9230110I02 gene | ||
Gm43073 | 3 | 1188 | - | unclassified gene | predicted gene 43073 | |
D3Mit157 | 3 | 149 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 157 | ||
D3Mit157.2 | 3 | 116 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 157.2 | ||
Tssr34656 | 3 | 27 | - | TSS region | transcription start site region 34656 | |
Tssr34657 | 3 | 64 | - | TSS region | transcription start site region 34657 | |
Tssr34658 | 3 | 17 | - | TSS region | transcription start site region 34658 | |
Cpgi13586 | 3 | 252 | CpG island | CpG island 13586 | ||
Cpgi13587 | 3 | 209 | CpG island | CpG island 13587 | ||
Cpgi13588 | 3 | 243 | CpG island | CpG island 13588 | ||
Cpgi13589 | 3 | 289 | CpG island | CpG island 13589 | ||
Gm40101 | 3 | 2528 | + | lncRNA gene | predicted gene, 40101 | |
Cpgi13590 | 3 | 237 | CpG island | CpG island 13590 | ||
Olfr1402 | 3 | 962 | - | protein coding gene | olfactory receptor 1402 | |
Tssr34659 | 3 | 38 | - | TSS region | transcription start site region 34659 | |
Gm40102 | 3 | 26287 | + | lncRNA gene | predicted gene, 40102 | |
Chd1l | 3 | 49461 | - | protein coding gene | chromodomain helicase DNA binding protein 1-like | |
Cpgi13591 | 3 | 776 | CpG island | CpG island 13591 | ||
Gm43075 | 3 | 3904 | + | unclassified gene | predicted gene 43075 | |
Tssr34660 | 3 | 66 | - | TSS region | transcription start site region 34660 | |
Fmo5 | 3 | 26478 | + | protein coding gene | flavin containing monooxygenase 5 | |
Tssr30791 | 3 | 20 | + | TSS region | transcription start site region 30791 | |
Tssr30792 | 3 | 11 | + | TSS region | transcription start site region 30792 | |
Tssr30793 | 3 | 20 | + | TSS region | transcription start site region 30793 | |
Tssr30794 | 3 | 14 | + | TSS region | transcription start site region 30794 | |
Tssr30795 | 3 | 12 | + | TSS region | transcription start site region 30795 | |
Tssr30796 | 3 | 8 | + | TSS region | transcription start site region 30796 | |
Tssr30797 | 3 | 12 | + | TSS region | transcription start site region 30797 | |
Tssr974 | 3 | 31 | + | TSS region | transcription start site region 974 | |
Tssr30798 | 3 | 74 | + | TSS region | transcription start site region 30798 | |
Cpgi13592 | 3 | 1127 | CpG island | CpG island 13592 | ||
Prkab2 | 3 | 15600 | + | protein coding gene | protein kinase, AMP-activated, beta 2 non-catalytic subunit | |
Tssr30799 | 3 | 48 | + | TSS region | transcription start site region 30799 | |
Tssr30800 | 3 | 9 | + | TSS region | transcription start site region 30800 | |
Tssr30801 | 3 | 60 | + | TSS region | transcription start site region 30801 | |
Tssr30802 | 3 | 12 | + | TSS region | transcription start site region 30802 | |
Gm17651 | 3 | 1663 | - | protein coding gene | predicted gene, 17651 | |
Gm31242 | 3 | 1725 | + | lncRNA gene | predicted gene, 31242 | |
Cpgi13593 | 3 | 791 | CpG island | CpG island 13593 | ||
n-TQctg2 | 3 | 71 | + | tRNA gene | nuclear encoded tRNA glutamine 2 (anticodon CTG) | |
Pde4dip | 3 | 198879 | - | protein coding gene | phosphodiesterase 4D interacting protein (myomegalin) | |
Mir7225 | 3 | 53 | - | miRNA gene | microRNA 7225 | |
Tssr30803 | 3 | 10 | + | TSS region | transcription start site region 30803 | |
Tssr34661 | 3 | 14 | - | TSS region | transcription start site region 34661 | |
Tssr34662 | 3 | 30 | - | TSS region | transcription start site region 34662 | |
Tssr34663 | 3 | 16 | - | TSS region | transcription start site region 34663 | |
Tssr34664 | 3 | 12 | - | TSS region | transcription start site region 34664 | |
Tssr34665 | 3 | 7 | - | TSS region | transcription start site region 34665 | |
Tssr34666 | 3 | 37 | - | TSS region | transcription start site region 34666 | |
Tssr34667 | 3 | 39 | - | TSS region | transcription start site region 34667 | |
Tssr34668 | 3 | 4 | - | TSS region | transcription start site region 34668 | |
Gm31305 | 3 | 5827 | + | antisense lncRNA gene | predicted gene, 31305 | |
Tssr34669 | 3 | 41 | - | TSS region | transcription start site region 34669 | |
Gm46816 | 3 | 2042 | + | lncRNA gene | predicted gene, 46816 | |
Cpgi13594 | 3 | 251 | CpG island | CpG island 13594 | ||
Tssr34670 | 3 | 4 | - | TSS region | transcription start site region 34670 | |
A630078F23Rik | 3 | 1249 | unclassified gene | RIKEN cDNA A630078F23 gene | ||
Tssr34671 | 3 | 5 | - | TSS region | transcription start site region 34671 | |
Cpgi13595 | 3 | 1540 | CpG island | CpG island 13595 | ||
Tssr34672 | 3 | 95 | - | TSS region | transcription start site region 34672 | |
Tssr34673 | 3 | 108 | - | TSS region | transcription start site region 34673 | |
Tssr34674 | 3 | 4 | - | TSS region | transcription start site region 34674 | |
Gm18823 | 3 | 776 | - | pseudogene | predicted gene, 18823 | |
D3Mit41 | 3 | 208 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 41 | ||
D3Mit233 | 3 | 288 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 233 | ||
Cpgi13596 | 3 | 447 | CpG island | CpG island 13596 | ||
Tssr34675 | 3 | 14 | - | TSS region | transcription start site region 34675 | |
Tssr34676 | 3 | 36 | - | TSS region | transcription start site region 34676 | |
Cpgi13597 | 3 | 787 | CpG island | CpG island 13597 | ||
Tssr34677 | 3 | 11 | - | TSS region | transcription start site region 34677 | |
Tssr34678 | 3 | 11 | - | TSS region | transcription start site region 34678 | |
Tssr34679 | 3 | 15 | - | TSS region | transcription start site region 34679 | |
Tssr34680 | 3 | 13 | - | TSS region | transcription start site region 34680 | |
Tssr34681 | 3 | 5 | - | TSS region | transcription start site region 34681 | |
Tssr34682 | 3 | 19 | - | TSS region | transcription start site region 34682 | |
Tssr34683 | 3 | 11 | - | TSS region | transcription start site region 34683 | |
Tssr34684 | 3 | 4 | - | TSS region | transcription start site region 34684 | |
Cpgi13598 | 3 | 735 | CpG island | CpG island 13598 | ||
Tssr34685 | 3 | 19 | - | TSS region | transcription start site region 34685 | |
Tssr34686 | 3 | 133 | - | TSS region | transcription start site region 34686 | |
Tssr34687 | 3 | 18 | - | TSS region | transcription start site region 34687 | |
Tssr34688 | 3 | 18 | - | TSS region | transcription start site region 34688 | |
Gm15999 | 3 | 8858 | - | lincRNA gene | predicted gene 15999 | |
Cpgi13599 | 3 | 475 | CpG island | CpG island 13599 | ||
Tssr30804 | 3 | 51 | + | TSS region | transcription start site region 30804 | |
Sec22b | 3 | 21091 | + | protein coding gene | SEC22 homolog B, vesicle trafficking protein | |
Tssr30805 | 3 | 54 | + | TSS region | transcription start site region 30805 | |
Gm5544 | 3 | 36845 | + | lincRNA gene | predicted gene 5544 | |
Tssr30806 | 3 | 9 | + | TSS region | transcription start site region 30806 | |
Tssr30807 | 3 | 28 | + | TSS region | transcription start site region 30807 | |
Tssr34689 | 3 | 60 | - | TSS region | transcription start site region 34689 | |
Tssr34690 | 3 | 26 | - | TSS region | transcription start site region 34690 | |
Nctm1 | 3 | -2674422 | QTL | Nakano cataract modifier 1 |