Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96604079-97714101

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lix1l 3 96601133 to 96625352 24219 + protein coding gene Lix1-like
6330549D23Rik 3 96606662 to 96629819 23157 - pseudogene RIKEN cDNA 6330549D23 gene
Tssr30741 3 96618597 to 96618628 31 + TSS region transcription start site region 30741
Cpgi13574 3 96629712 to 96630173 461 CpG island CpG island 13574
Tssr34637 3 96629788 to 96629828 40 - TSS region transcription start site region 34637
Tssr30742 3 96629887 to 96629913 26 + TSS region transcription start site region 30742
Tssr30743 3 96629919 to 96629955 36 + TSS region transcription start site region 30743
Rbm8a 3 96629933 to 96633791 3858 + protein coding gene RNA binding motif protein 8a
Tssr30744 3 96630168 to 96630200 32 + TSS region transcription start site region 30744
Cpgi13575 3 96635268 to 96636195 927 CpG island CpG island 13575
Pex11b 3 96635376 to 96645366 9990 + protein coding gene peroxisomal biogenesis factor 11 beta
Tssr30745 3 96635462 to 96635475 13 + TSS region transcription start site region 30745
Gm42957 3 96635474 to 96653101 17627 + protein coding gene predicted gene 42957
Tssr30746 3 96635617 to 96635686 69 + TSS region transcription start site region 30746
Tssr30747 3 96635817 to 96635837 20 + TSS region transcription start site region 30747
Tssr30748 3 96635840 to 96635868 28 + TSS region transcription start site region 30748
D3Mit101 3 96641414 to 96641521 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 101
Eae3 3 96641414 to 96641521 107 QTL experimental allergic encephalomyelitis susceptibility 3
Tssr30749 3 96643809 to 96643811 2 + TSS region transcription start site region 30749
Tssr30750 3 96645579 to 96645608 29 + TSS region transcription start site region 30750
Itga10 3 96645584 to 96664519 18935 + protein coding gene integrin, alpha 10
Rpl21-ps11 3 96666503 to 96666982 479 - pseudogene ribosomal protein L21, pseudogene 11
Tssr34638 3 96667023 to 96667033 10 - TSS region transcription start site region 34638
Cpgi13576 3 96670006 to 96670539 533 CpG island CpG island 13576
Ankrd35 3 96670131 to 96691032 20901 + protein coding gene ankyrin repeat domain 35
Tssr30751 3 96670298 to 96670346 48 + TSS region transcription start site region 30751
Tssr30752 3 96676242 to 96676255 13 + TSS region transcription start site region 30752
Cpgi13577 3 96684589 to 96685192 603 CpG island CpG island 13577
C230057H02Rik 3 96693858 to 96697011 3153 unclassified gene RIKEN cDNA C230057H02 gene
Cpgi13578 3 96696311 to 96697699 1388 CpG island CpG island 13578
Tssr30753 3 96696379 to 96696396 17 + TSS region transcription start site region 30753
Pias3 3 96696384 to 96706070 9686 + protein coding gene protein inhibitor of activated STAT 3
Tssr30754 3 96696400 to 96696477 77 + TSS region transcription start site region 30754
Tssr30755 3 96697076 to 96697090 14 + TSS region transcription start site region 30755
Tssr30756 3 96697100 to 96697165 65 + TSS region transcription start site region 30756
Tssr30757 3 96699251 to 96699267 16 + TSS region transcription start site region 30757
Tssr30758 3 96699302 to 96699304 2 + TSS region transcription start site region 30758
Nudt17 3 96706067 to 96708562 2495 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 17
Cpgi13579 3 96708178 to 96708646 468 CpG island CpG island 13579
Tssr34639 3 96708524 to 96708553 29 - TSS region transcription start site region 34639
Polr3c 3 96711518 to 96727493 15975 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide C
Cpgi13580 3 96719228 to 96719497 269 CpG island CpG island 13580
Gm22581 3 96724265 to 96724400 135 - snoRNA gene predicted gene, 22581
Gm42783 3 96724526 to 96725320 794 - unclassified gene predicted gene 42783
Cpgi13581 3 96727244 to 96728335 1091 CpG island CpG island 13581
Tssr34640 3 96727436 to 96727452 16 - TSS region transcription start site region 34640
Tssr34641 3 96727453 to 96727505 52 - TSS region transcription start site region 34641
Tssr30759 3 96727531 to 96727572 41 + TSS region transcription start site region 30759
Tssr34642 3 96727566 to 96727573 7 - TSS region transcription start site region 34642
Tssr30760 3 96727580 to 96727608 28 + TSS region transcription start site region 30760
Rnf115 3 96727585 to 96791155 63570 + protein coding gene ring finger protein 115
Tssr30761 3 96727613 to 96727620 7 + TSS region transcription start site region 30761
Tssr30762 3 96727659 to 96727726 67 + TSS region transcription start site region 30762
Tssr30763 3 96727767 to 96727794 27 + TSS region transcription start site region 30763
Tssr30764 3 96729670 to 96729674 4 + TSS region transcription start site region 30764
Tssr30765 3 96750930 to 96750938 8 + TSS region transcription start site region 30765
Tssr30766 3 96751056 to 96751102 46 + TSS region transcription start site region 30766
Tssr30767 3 96757931 to 96757942 11 + TSS region transcription start site region 30767
Tssr30768 3 96757952 to 96757989 37 + TSS region transcription start site region 30768
Gm42782 3 96784325 to 96784846 521 + unclassified gene predicted gene 42782
Tssr30769 3 96795921 to 96795934 13 + TSS region transcription start site region 30769
Cd160 3 96798763 to 96829351 30588 - protein coding gene CD160 antigen
Tssr34643 3 96814518 to 96814532 14 - TSS region transcription start site region 34643
Tssr973 3 96824084 to 96824089 5 + TSS region transcription start site region 973
Tssr30770 3 96824104 to 96824123 19 + TSS region transcription start site region 30770
Pdzk1 3 96829384 to 96870926 41542 + protein coding gene PDZ domain containing 1
Tssr30771 3 96829427 to 96829435 8 + TSS region transcription start site region 30771
Tssr30772 3 96829459 to 96829474 15 + TSS region transcription start site region 30772
Tssr30773 3 96829493 to 96829501 8 + TSS region transcription start site region 30773
4930442L01Rik 3 96829826 to 96832070 2244 - antisense lncRNA gene RIKEN cDNA 4930442L01 gene
Tssr30774 3 96830069 to 96830115 46 + TSS region transcription start site region 30774
Tssr30775 3 96830123 to 96830139 16 + TSS region transcription start site region 30775
Tssr34644 3 96830970 to 96830975 5 - TSS region transcription start site region 34644
Tssr34645 3 96832049 to 96832081 32 - TSS region transcription start site region 34645
Tssr34646 3 96832090 to 96832095 5 - TSS region transcription start site region 34646
Tssr30776 3 96832142 to 96832181 39 + TSS region transcription start site region 30776
Tssr30777 3 96832182 to 96832191 9 + TSS region transcription start site region 30777
Tssr30778 3 96833218 to 96833257 39 + TSS region transcription start site region 30778
Tssr30779 3 96833265 to 96833276 11 + TSS region transcription start site region 30779
Gpr89 3 96868298 to 96905343 37045 - protein coding gene G protein-coupled receptor 89
Cpgi13582 3 96904685 to 96905446 761 CpG island CpG island 13582
Tssr34647 3 96905247 to 96905258 11 - TSS region transcription start site region 34647
Tssr34648 3 96905273 to 96905292 19 - TSS region transcription start site region 34648
Tssr34649 3 96905294 to 96905341 47 - TSS region transcription start site region 34649
Gja8 3 96913566 to 96926020 12454 - protein coding gene gap junction protein, alpha 8
Cpgi13583 3 96919764 to 96920294 530 CpG island CpG island 13583
Tssr34650 3 96925919 to 96925941 22 - TSS region transcription start site region 34650
Tssr34651 3 96926056 to 96926067 11 - TSS region transcription start site region 34651
Tssr30780 3 96975392 to 96975399 7 + TSS region transcription start site region 30780
9230114J08Rik 3 96998722 to 97000771 2049 - antisense lncRNA gene RIKEN cDNA 9230114J08 gene
Tssr30781 3 97032394 to 97032408 14 + TSS region transcription start site region 30781
Gja5 3 97032402 to 97053634 21232 + protein coding gene gap junction protein, alpha 5
Tssr30782 3 97032423 to 97032432 9 + TSS region transcription start site region 30782
Tssr30783 3 97032437 to 97032448 11 + TSS region transcription start site region 30783
4930573H18Rik 3 97046656 to 97092785 46129 - antisense lncRNA gene RIKEN cDNA 4930573H18 gene
Gm31120 3 97074153 to 97076020 1867 + lncRNA gene predicted gene, 31120
D3Mit100 3 97081705 to 97081845 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 100
Gm31183 3 97101092 to 97102959 1867 + lncRNA gene predicted gene, 31183
Gm43222 3 97125511 to 97126113 602 - pseudogene predicted gene 43222
Gm24435 3 97140552 to 97140661 109 - snRNA gene predicted gene, 24435
n-TEctc12 3 97158085 to 97158156 71 + tRNA gene nuclear encoded tRNA glutamic acid 12 (anticodon CTC)
Cpgi13584 3 97158720 to 97159434 714 CpG island CpG island 13584
Acp6 3 97158751 to 97176576 17825 + protein coding gene acid phosphatase 6, lysophosphatidic
Tssr30784 3 97158767 to 97158820 53 + TSS region transcription start site region 30784
Tssr30785 3 97158823 to 97158845 22 + TSS region transcription start site region 30785
Tssr30786 3 97158852 to 97158870 18 + TSS region transcription start site region 30786
Tssr30787 3 97159010 to 97159037 27 + TSS region transcription start site region 30787
Tssr30788 3 97159047 to 97159064 17 + TSS region transcription start site region 30788
Tssr30789 3 97159079 to 97159101 22 + TSS region transcription start site region 30789
Tssr30790 3 97162989 to 97163002 13 + TSS region transcription start site region 30790
Bcl9 3 97203662 to 97297917 94255 - protein coding gene B cell CLL/lymphoma 9
Tssr34652 3 97204474 to 97204483 9 - TSS region transcription start site region 34652
Tssr34653 3 97208904 to 97208915 11 - TSS region transcription start site region 34653
Cpgi13585 3 97226831 to 97228234 1403 CpG island CpG island 13585
Tssr34654 3 97227383 to 97227421 38 - TSS region transcription start site region 34654
Tssr34655 3 97242529 to 97242532 3 - TSS region transcription start site region 34655
Gm42508 3 97262355 to 97265646 3291 + unclassified gene predicted gene 42508
9230110I02Rik 3 97270631 to 97271622 991 unclassified non-coding RNA gene RIKEN cDNA 9230110I02 gene
Gm43073 3 97273876 to 97275064 1188 - unclassified gene predicted gene 43073
D3Mit157 3 97279136 to 97279285 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157
D3Mit157.2 3 97279267 to 97279383 116 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 157.2
Tssr34656 3 97297806 to 97297833 27 - TSS region transcription start site region 34656
Tssr34657 3 97297852 to 97297916 64 - TSS region transcription start site region 34657
Tssr34658 3 97297921 to 97297938 17 - TSS region transcription start site region 34658
Cpgi13586 3 97298158 to 97298410 252 CpG island CpG island 13586
Cpgi13587 3 97311517 to 97311726 209 CpG island CpG island 13587
Cpgi13588 3 97312112 to 97312355 243 CpG island CpG island 13588
Cpgi13589 3 97324122 to 97324411 289 CpG island CpG island 13589
Gm40101 3 97330420 to 97332948 2528 + lncRNA gene predicted gene, 40101
Cpgi13590 3 97331500 to 97331737 237 CpG island CpG island 13590
Olfr1402 3 97410217 to 97411179 962 - protein coding gene olfactory receptor 1402
Tssr34659 3 97546279 to 97546317 38 - TSS region transcription start site region 34659
Gm40102 3 97546303 to 97572590 26287 + lncRNA gene predicted gene, 40102
Chd1l 3 97560742 to 97610203 49461 - protein coding gene chromodomain helicase DNA binding protein 1-like
Cpgi13591 3 97609627 to 97610403 776 CpG island CpG island 13591
Gm43075 3 97609932 to 97613836 3904 + unclassified gene predicted gene 43075
Tssr34660 3 97610156 to 97610222 66 - TSS region transcription start site region 34660
Fmo5 3 97628804 to 97655282 26478 + protein coding gene flavin containing monooxygenase 5
Tssr30791 3 97628844 to 97628864 20 + TSS region transcription start site region 30791
Tssr30792 3 97633158 to 97633169 11 + TSS region transcription start site region 30792
Tssr30793 3 97651674 to 97651694 20 + TSS region transcription start site region 30793
Tssr30794 3 97651751 to 97651765 14 + TSS region transcription start site region 30794
Tssr30795 3 97651785 to 97651797 12 + TSS region transcription start site region 30795
Tssr30796 3 97651822 to 97651830 8 + TSS region transcription start site region 30796
Tssr30797 3 97651853 to 97651865 12 + TSS region transcription start site region 30797
Tssr974 3 97651889 to 97651920 31 + TSS region transcription start site region 974
Tssr30798 3 97651972 to 97652046 74 + TSS region transcription start site region 30798
Cpgi13592 3 97657858 to 97658985 1127 CpG island CpG island 13592
Prkab2 3 97658212 to 97673812 15600 + protein coding gene protein kinase, AMP-activated, beta 2 non-catalytic subunit
Tssr30799 3 97658291 to 97658339 48 + TSS region transcription start site region 30799
Tssr30800 3 97658383 to 97658392 9 + TSS region transcription start site region 30800
Tssr30801 3 97658555 to 97658615 60 + TSS region transcription start site region 30801
Tssr30802 3 97658616 to 97658628 12 + TSS region transcription start site region 30802
Gm17651 3 97673031 to 97674694 1663 - protein coding gene predicted gene, 17651
Gm31242 3 97680336 to 97682061 1725 + lncRNA gene predicted gene, 31242
Cpgi13593 3 97681158 to 97681949 791 CpG island CpG island 13593
n-TQctg2 3 97681459 to 97681530 71 + tRNA gene nuclear encoded tRNA glutamine 2 (anticodon CTG)
Pde4dip 3 97689828 to 97888707 198879 - protein coding gene phosphodiesterase 4D interacting protein (myomegalin)
Mir7225 3 97690509 to 97690562 53 - miRNA gene microRNA 7225
Tssr30803 3 97690829 to 97690839 10 + TSS region transcription start site region 30803
Tssr34661 3 97697130 to 97697144 14 - TSS region transcription start site region 34661
Tssr34662 3 97699176 to 97699206 30 - TSS region transcription start site region 34662
Tssr34663 3 97702602 to 97702618 16 - TSS region transcription start site region 34663
Tssr34664 3 97702652 to 97702664 12 - TSS region transcription start site region 34664
Tssr34665 3 97702678 to 97702685 7 - TSS region transcription start site region 34665
Tssr34666 3 97702866 to 97702903 37 - TSS region transcription start site region 34666
Tssr34667 3 97703665 to 97703704 39 - TSS region transcription start site region 34667
Tssr34668 3 97713226 to 97713230 4 - TSS region transcription start site region 34668
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6