Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96580123-97080139

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16253 3 96576984 to 96580663 3679 + protein coding gene predicted gene 16253
Polr3gl 3 96577872 to 96594181 16309 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide G like
Tssr34631 3 96580137 to 96580148 11 - TSS region transcription start site region 34631
Tssr34632 3 96580187 to 96580203 16 - TSS region transcription start site region 34632
Tssr34633 3 96580213 to 96580231 18 - TSS region transcription start site region 34633
Cpgi13570 3 96580313 to 96580525 212 CpG island CpG island 13570
Tssr34634 3 96582595 to 96582599 4 - TSS region transcription start site region 34634
Tssr34635 3 96592741 to 96592790 49 - TSS region transcription start site region 34635
Cpgi13571 3 96593819 to 96594335 516 CpG island CpG island 13571
Tssr34636 3 96594128 to 96594176 48 - TSS region transcription start site region 34636
Tssr30736 3 96596593 to 96596609 16 + TSS region transcription start site region 30736
Tssr30737 3 96596613 to 96596626 13 + TSS region transcription start site region 30737
Tssr30738 3 96596628 to 96596662 34 + TSS region transcription start site region 30738
Ankrd34a 3 96596636 to 96599775 3139 + protein coding gene ankyrin repeat domain 34A
Tssr30739 3 96596701 to 96596712 11 + TSS region transcription start site region 30739
Cpgi13572 3 96597043 to 96598823 1780 CpG island CpG island 13572
Cpgi13573 3 96600897 to 96601712 815 CpG island CpG island 13573
Tssr30740 3 96601084 to 96601139 55 + TSS region transcription start site region 30740
Lix1l 3 96601133 to 96625352 24219 + protein coding gene Lix1-like
6330549D23Rik 3 96606662 to 96629819 23157 - pseudogene RIKEN cDNA 6330549D23 gene
Tssr30741 3 96618597 to 96618628 31 + TSS region transcription start site region 30741
Cpgi13574 3 96629712 to 96630173 461 CpG island CpG island 13574
Tssr34637 3 96629788 to 96629828 40 - TSS region transcription start site region 34637
Tssr30742 3 96629887 to 96629913 26 + TSS region transcription start site region 30742
Tssr30743 3 96629919 to 96629955 36 + TSS region transcription start site region 30743
Rbm8a 3 96629933 to 96633791 3858 + protein coding gene RNA binding motif protein 8a
Tssr30744 3 96630168 to 96630200 32 + TSS region transcription start site region 30744
Cpgi13575 3 96635268 to 96636195 927 CpG island CpG island 13575
Pex11b 3 96635376 to 96645366 9990 + protein coding gene peroxisomal biogenesis factor 11 beta
Tssr30745 3 96635462 to 96635475 13 + TSS region transcription start site region 30745
Gm42957 3 96635474 to 96653101 17627 + protein coding gene predicted gene 42957
Tssr30746 3 96635617 to 96635686 69 + TSS region transcription start site region 30746
Tssr30747 3 96635817 to 96635837 20 + TSS region transcription start site region 30747
Tssr30748 3 96635840 to 96635868 28 + TSS region transcription start site region 30748
D3Mit101 3 96641414 to 96641521 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 101
Eae3 3 96641414 to 96641521 107 QTL experimental allergic encephalomyelitis susceptibility 3
Tssr30749 3 96643809 to 96643811 2 + TSS region transcription start site region 30749
Tssr30750 3 96645579 to 96645608 29 + TSS region transcription start site region 30750
Itga10 3 96645584 to 96664519 18935 + protein coding gene integrin, alpha 10
Rpl21-ps11 3 96666503 to 96666982 479 - pseudogene ribosomal protein L21, pseudogene 11
Tssr34638 3 96667023 to 96667033 10 - TSS region transcription start site region 34638
Cpgi13576 3 96670006 to 96670539 533 CpG island CpG island 13576
Ankrd35 3 96670131 to 96691032 20901 + protein coding gene ankyrin repeat domain 35
Tssr30751 3 96670298 to 96670346 48 + TSS region transcription start site region 30751
Tssr30752 3 96676242 to 96676255 13 + TSS region transcription start site region 30752
Cpgi13577 3 96684589 to 96685192 603 CpG island CpG island 13577
C230057H02Rik 3 96693858 to 96697011 3153 unclassified gene RIKEN cDNA C230057H02 gene
Cpgi13578 3 96696311 to 96697699 1388 CpG island CpG island 13578
Tssr30753 3 96696379 to 96696396 17 + TSS region transcription start site region 30753
Pias3 3 96696384 to 96706070 9686 + protein coding gene protein inhibitor of activated STAT 3
Tssr30754 3 96696400 to 96696477 77 + TSS region transcription start site region 30754
Tssr30755 3 96697076 to 96697090 14 + TSS region transcription start site region 30755
Tssr30756 3 96697100 to 96697165 65 + TSS region transcription start site region 30756
Tssr30757 3 96699251 to 96699267 16 + TSS region transcription start site region 30757
Tssr30758 3 96699302 to 96699304 2 + TSS region transcription start site region 30758
Nudt17 3 96706067 to 96708562 2495 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 17
Cpgi13579 3 96708178 to 96708646 468 CpG island CpG island 13579
Tssr34639 3 96708524 to 96708553 29 - TSS region transcription start site region 34639
Polr3c 3 96711518 to 96727493 15975 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide C
Cpgi13580 3 96719228 to 96719497 269 CpG island CpG island 13580
Gm22581 3 96724265 to 96724400 135 - snoRNA gene predicted gene, 22581
Gm42783 3 96724526 to 96725320 794 - unclassified gene predicted gene 42783
Cpgi13581 3 96727244 to 96728335 1091 CpG island CpG island 13581
Tssr34640 3 96727436 to 96727452 16 - TSS region transcription start site region 34640
Tssr34641 3 96727453 to 96727505 52 - TSS region transcription start site region 34641
Tssr30759 3 96727531 to 96727572 41 + TSS region transcription start site region 30759
Tssr34642 3 96727566 to 96727573 7 - TSS region transcription start site region 34642
Tssr30760 3 96727580 to 96727608 28 + TSS region transcription start site region 30760
Rnf115 3 96727585 to 96791155 63570 + protein coding gene ring finger protein 115
Tssr30761 3 96727613 to 96727620 7 + TSS region transcription start site region 30761
Tssr30762 3 96727659 to 96727726 67 + TSS region transcription start site region 30762
Tssr30763 3 96727767 to 96727794 27 + TSS region transcription start site region 30763
Tssr30764 3 96729670 to 96729674 4 + TSS region transcription start site region 30764
Tssr30765 3 96750930 to 96750938 8 + TSS region transcription start site region 30765
Tssr30766 3 96751056 to 96751102 46 + TSS region transcription start site region 30766
Tssr30767 3 96757931 to 96757942 11 + TSS region transcription start site region 30767
Tssr30768 3 96757952 to 96757989 37 + TSS region transcription start site region 30768
Gm42782 3 96784325 to 96784846 521 + unclassified gene predicted gene 42782
Tssr30769 3 96795921 to 96795934 13 + TSS region transcription start site region 30769
Cd160 3 96798763 to 96829351 30588 - protein coding gene CD160 antigen
Tssr34643 3 96814518 to 96814532 14 - TSS region transcription start site region 34643
Tssr973 3 96824084 to 96824089 5 + TSS region transcription start site region 973
Tssr30770 3 96824104 to 96824123 19 + TSS region transcription start site region 30770
Pdzk1 3 96829384 to 96870926 41542 + protein coding gene PDZ domain containing 1
Tssr30771 3 96829427 to 96829435 8 + TSS region transcription start site region 30771
Tssr30772 3 96829459 to 96829474 15 + TSS region transcription start site region 30772
Tssr30773 3 96829493 to 96829501 8 + TSS region transcription start site region 30773
4930442L01Rik 3 96829826 to 96832070 2244 - antisense lncRNA gene RIKEN cDNA 4930442L01 gene
Tssr30774 3 96830069 to 96830115 46 + TSS region transcription start site region 30774
Tssr30775 3 96830123 to 96830139 16 + TSS region transcription start site region 30775
Tssr34644 3 96830970 to 96830975 5 - TSS region transcription start site region 34644
Tssr34645 3 96832049 to 96832081 32 - TSS region transcription start site region 34645
Tssr34646 3 96832090 to 96832095 5 - TSS region transcription start site region 34646
Tssr30776 3 96832142 to 96832181 39 + TSS region transcription start site region 30776
Tssr30777 3 96832182 to 96832191 9 + TSS region transcription start site region 30777
Tssr30778 3 96833218 to 96833257 39 + TSS region transcription start site region 30778
Tssr30779 3 96833265 to 96833276 11 + TSS region transcription start site region 30779
Gpr89 3 96868298 to 96905343 37045 - protein coding gene G protein-coupled receptor 89
Cpgi13582 3 96904685 to 96905446 761 CpG island CpG island 13582
Tssr34647 3 96905247 to 96905258 11 - TSS region transcription start site region 34647
Tssr34648 3 96905273 to 96905292 19 - TSS region transcription start site region 34648
Tssr34649 3 96905294 to 96905341 47 - TSS region transcription start site region 34649
Gja8 3 96913566 to 96926020 12454 - protein coding gene gap junction protein, alpha 8
Cpgi13583 3 96919764 to 96920294 530 CpG island CpG island 13583
Tssr34650 3 96925919 to 96925941 22 - TSS region transcription start site region 34650
Tssr34651 3 96926056 to 96926067 11 - TSS region transcription start site region 34651
Tssr30780 3 96975392 to 96975399 7 + TSS region transcription start site region 30780
9230114J08Rik 3 96998722 to 97000771 2049 - antisense lncRNA gene RIKEN cDNA 9230114J08 gene
Tssr30781 3 97032394 to 97032408 14 + TSS region transcription start site region 30781
Gja5 3 97032402 to 97053634 21232 + protein coding gene gap junction protein, alpha 5
Tssr30782 3 97032423 to 97032432 9 + TSS region transcription start site region 30782
Tssr30783 3 97032437 to 97032448 11 + TSS region transcription start site region 30783
4930573H18Rik 3 97046656 to 97092785 46129 - antisense lncRNA gene RIKEN cDNA 4930573H18 gene
Gm31120 3 97074153 to 97076020 1867 + lncRNA gene predicted gene, 31120
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57