Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96354138-96564211

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Platr30 3 96345287 to 96358480 13193 + lincRNA gene pluripotency associated transcript 30
Gm26553 3 96349587 to 96357151 7564 - lincRNA gene predicted gene, 26553
Rnu1b1 3 96359953 to 96360117 164 - snRNA gene U1b1 small nuclear RNA
Rnu1b2 3 96374021 to 96374185 164 + snRNA gene U1b2 small nuclear RNA
Gm17575 3 96375646 to 96388864 13218 - lincRNA gene predicted gene, 17575
Gm26689 3 96376976 to 96384563 7587 + lincRNA gene predicted gene, 26689
n-TGccc1 3 96382911 to 96382981 70 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon CCC)
n-TEttc2 3 96387405 to 96387476 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
Cpgi13555 3 96390428 to 96390676 248 CpG island CpG island 13555
n-TQctg4 3 96399059 to 96399130 71 - tRNA gene nuclear encoded tRNA glutamine 4 (anticodon CTG)
4930477E14Rik 3 96401150 to 96402014 864 - lincRNA gene RIKEN cDNA 4930477E14 gene
Cpgi13556 3 96401679 to 96402441 762 CpG island CpG island 13556
Tssr34622 3 96401995 to 96402005 10 - TSS region transcription start site region 34622
Tssr34623 3 96402010 to 96402017 7 - TSS region transcription start site region 34623
Tssr30713 3 96402096 to 96402110 14 + TSS region transcription start site region 30713
Tssr30714 3 96402118 to 96402121 3 + TSS region transcription start site region 30714
Tssr30715 3 96402124 to 96402136 12 + TSS region transcription start site region 30715
n-TNgtt10 3 96402218 to 96402291 73 + tRNA gene nuclear encoded tRNA asparagine 10 (anticodon GTT)
Gm26654 3 96402480 to 96402952 472 + lincRNA gene predicted gene, 26654
Cpgi13557 3 96404381 to 96404811 430 CpG island CpG island 13557
Pafah1b1-ps1 3 96407517 to 96409059 1542 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
Cpgi13558 3 96409327 to 96410262 935 CpG island CpG island 13558
n-THgtg6 3 96410069 to 96410140 71 + tRNA gene nuclear encoded tRNA histidine 6 (anticodon GTG)
Gm21960 3 96412910 to 96413361 451 - pseudogene predicted gene, 21960
Cpgi13559 3 96414163 to 96414951 788 CpG island CpG island 13559
Terc 3 96414437 to 96414833 396 - telomerase RNA gene telomerase RNA component
Tssr34624 3 96414825 to 96414839 14 - TSS region transcription start site region 34624
Tssr34625 3 96417732 to 96417759 27 - TSS region transcription start site region 34625
Gm24136 3 96422733 to 96422897 164 + snRNA gene predicted gene, 24136
n-TGccc6 3 96424033 to 96424103 70 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon CCC)
n-TKctt15 3 96428235 to 96428307 72 + tRNA gene nuclear encoded tRNA lysine 15 (anticodon CTT)
BC107364 3 96433788 to 96452306 18518 - protein coding gene cDNA sequence BC107364
Cpgi13560 3 96435651 to 96436195 544 CpG island CpG island 13560
n-THgtg2 3 96435972 to 96436043 71 + tRNA gene nuclear encoded tRNA histidine 2 (anticodon GTG)
Gm26232 3 96450446 to 96450611 165 + snRNA gene predicted gene, 26232
n-TNgtt11 3 96451425 to 96451498 73 + tRNA gene nuclear encoded tRNA asparagine 11 (anticodon GTT)
n-THgtg7 3 96452495 to 96452566 71 + tRNA gene nuclear encoded tRNA histidine 7 (anticodon GTG)
Gm9207 3 96454835 to 96455949 1114 - pseudogene predicted gene 9207
n-THgtg9 3 96458070 to 96458141 71 - tRNA gene nuclear encoded tRNA histidine 9 (anticodon GTG)
Gm40099 3 96458995 to 96460336 1341 - lncRNA gene predicted gene, 40099
n-TNgtt13 3 96459138 to 96459211 73 - tRNA gene nuclear encoded tRNA asparagine 13 (anticodon GTT)
Rnu1b6 3 96460024 to 96460189 165 - snRNA gene U1b6 small nuclear RNA
Gm10685 3 96460186 to 96466925 6739 + lincRNA gene predicted gene 10685
Cpgi13561 3 96463902 to 96464297 395 CpG island CpG island 13561
n-THgtg1 3 96463972 to 96464043 71 - tRNA gene nuclear encoded tRNA histidine 1 (anticodon GTG)
Gm43534 3 96464072 to 96466924 2852 - unclassified gene predicted gene 43534
Cpgi13562 3 96474833 to 96475589 756 CpG island CpG island 13562
n-TQctg3 3 96479391 to 96479462 71 + tRNA gene nuclear encoded tRNA glutamine 3 (anticodon CTG)
Gm28001 3 96485161 to 96485277 116 + rRNA gene predicted gene, 28001
Gm25890 3 96486555 to 96486719 164 - snRNA gene predicted gene, 25890
Gm22614 3 96488729 to 96488893 164 + snRNA gene predicted gene, 22614
Cpgi13563 3 96497294 to 96497594 300 CpG island CpG island 13563
n-TNgtt12 3 96497781 to 96497854 73 + tRNA gene nuclear encoded tRNA asparagine 12 (anticodon GTT)
n-TKctt16 3 96499512 to 96499584 72 - tRNA gene nuclear encoded tRNA lysine 16 (anticodon CTT)
Cpgi13564 3 96499723 to 96500593 870 CpG island CpG island 13564
n-THgtg8 3 96500366 to 96500437 71 - tRNA gene nuclear encoded tRNA histidine 8 (anticodon GTG)
n-TGtcc7 3 96501009 to 96501080 71 - tRNA gene nuclear encoded tRNA glycine 7 (anticodon TCC)
n-TEctc13 3 96501447 to 96501518 71 - tRNA gene nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
Gm40100 3 96506390 to 96508780 2390 - lncRNA gene predicted gene, 40100
Tssr30716 3 96520453 to 96520462 9 + TSS region transcription start site region 30716
Tssr30717 3 96525163 to 96525186 23 + TSS region transcription start site region 30717
Hjv 3 96525172 to 96529210 4038 + protein coding gene hemojuvelin BMP co-receptor
Tssr30718 3 96525192 to 96525219 27 + TSS region transcription start site region 30718
Cpgi13565 3 96526828 to 96527630 802 CpG island CpG island 13565
Cpgi13566 3 96528302 to 96528589 287 CpG island CpG island 13566
Tssr30719 3 96528612 to 96528614 2 + TSS region transcription start site region 30719
Gm15441 3 96555768 to 96566801 11033 - antisense lncRNA gene predicted gene 15441
Tssr34626 3 96556250 to 96556257 7 - TSS region transcription start site region 34626
Cpgi13567 3 96557633 to 96558000 367 CpG island CpG island 13567
Tssr34627 3 96557639 to 96557699 60 - TSS region transcription start site region 34627
Tssr34628 3 96557789 to 96557802 13 - TSS region transcription start site region 34628
Tssr30720 3 96557950 to 96557968 18 + TSS region transcription start site region 30720
Txnip 3 96557957 to 96561857 3900 + protein coding gene thioredoxin interacting protein
Tssr30721 3 96557985 to 96557989 4 + TSS region transcription start site region 30721
Tssr30722 3 96559114 to 96559144 30 + TSS region transcription start site region 30722
Tssr30723 3 96559494 to 96559504 10 + TSS region transcription start site region 30723
Tssr30724 3 96559584 to 96559597 13 + TSS region transcription start site region 30724
Tssr30725 3 96559633 to 96559682 49 + TSS region transcription start site region 30725
Tssr30726 3 96559697 to 96559711 14 + TSS region transcription start site region 30726
Tssr30727 3 96559743 to 96559756 13 + TSS region transcription start site region 30727
Tssr30728 3 96559937 to 96559974 37 + TSS region transcription start site region 30728
Tssr30729 3 96560242 to 96560263 21 + TSS region transcription start site region 30729
Tssr30730 3 96560280 to 96560293 13 + TSS region transcription start site region 30730
Tssr30731 3 96560297 to 96560318 21 + TSS region transcription start site region 30731
Tssr30732 3 96560321 to 96560343 22 + TSS region transcription start site region 30732
Tssr30733 3 96561331 to 96561347 16 + TSS region transcription start site region 30733