Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96314437-96514833

70 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
n-TNgtt4	3	96322074 to 96322147	73	+	tRNA gene	nuclear encoded tRNA asparagine 4 (anticodon GTT)
Gm24830	3	96328425 to 96328590	165	+	snRNA gene	predicted gene, 24830
n-TVcac10	3	96332740 to 96332812	72	+	tRNA gene	nuclear encoded tRNA valine 10 (anticodon CAC)
Cpgi13552	3	96333063 to 96333352	289		CpG island	CpG island 13552
Cpgi13553	3	96334014 to 96334756	742		CpG island	CpG island 13553
n-TNgtt5	3	96334615 to 96334688	73	-	tRNA gene	nuclear encoded tRNA asparagine 5 (anticodon GTT)
n-TNgtt1	3	96334971 to 96335044	73	+	tRNA gene	nuclear encoded tRNA asparagine 1 (anticodon GTT)
n-TQctg5	3	96341156 to 96341227	71	-	tRNA gene	nuclear encoded tRNA glutamine 5 (anticodon CTG)
Cpgi13554	3	96343500 to 96343780	280		CpG island	CpG island 13554
Platr30	3	96345287 to 96358480	13193	+	lincRNA gene	pluripotency associated transcript 30
n-TEttc3	3	96346675 to 96346746	71	+	tRNA gene	nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
Gm26553	3	96349587 to 96357151	7564	-	lincRNA gene	predicted gene, 26553
n-TGccc5	3	96351167 to 96351237	70	-	tRNA gene	nuclear encoded tRNA glycine 5 (anticodon CCC)
Rnu1b1	3	96359953 to 96360117	164	-	snRNA gene	U1b1 small nuclear RNA
Rnu1b2	3	96374021 to 96374185	164	+	snRNA gene	U1b2 small nuclear RNA
Gm17575	3	96375646 to 96388864	13218	-	lincRNA gene	predicted gene, 17575
Gm26689	3	96376976 to 96384563	7587	+	lincRNA gene	predicted gene, 26689
n-TGccc1	3	96382911 to 96382981	70	+	tRNA gene	nuclear encoded tRNA glycine 1 (anticodon CCC)
n-TEttc2	3	96387405 to 96387476	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
Cpgi13555	3	96390428 to 96390676	248		CpG island	CpG island 13555
n-TQctg4	3	96399059 to 96399130	71	-	tRNA gene	nuclear encoded tRNA glutamine 4 (anticodon CTG)
4930477E14Rik	3	96401150 to 96402014	864	-	lincRNA gene	RIKEN cDNA 4930477E14 gene
Cpgi13556	3	96401679 to 96402441	762		CpG island	CpG island 13556
Tssr34622	3	96401995 to 96402005	10	-	TSS region	transcription start site region 34622
Tssr34623	3	96402010 to 96402017	7	-	TSS region	transcription start site region 34623
Tssr30713	3	96402096 to 96402110	14	+	TSS region	transcription start site region 30713
Tssr30714	3	96402118 to 96402121	3	+	TSS region	transcription start site region 30714
Tssr30715	3	96402124 to 96402136	12	+	TSS region	transcription start site region 30715
n-TNgtt10	3	96402218 to 96402291	73	+	tRNA gene	nuclear encoded tRNA asparagine 10 (anticodon GTT)
Gm26654	3	96402480 to 96402952	472	+	lincRNA gene	predicted gene, 26654
Cpgi13557	3	96404381 to 96404811	430		CpG island	CpG island 13557
Pafah1b1-ps1	3	96407517 to 96409059	1542	-	pseudogene	platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
Cpgi13558	3	96409327 to 96410262	935		CpG island	CpG island 13558
n-THgtg6	3	96410069 to 96410140	71	+	tRNA gene	nuclear encoded tRNA histidine 6 (anticodon GTG)
Gm21960	3	96412910 to 96413361	451	-	pseudogene	predicted gene, 21960
Cpgi13559	3	96414163 to 96414951	788		CpG island	CpG island 13559
Terc	3	96414437 to 96414833	396	-	telomerase RNA gene	telomerase RNA component
Tssr34624	3	96414825 to 96414839	14	-	TSS region	transcription start site region 34624
Tssr34625	3	96417732 to 96417759	27	-	TSS region	transcription start site region 34625
Gm24136	3	96422733 to 96422897	164	+	snRNA gene	predicted gene, 24136
n-TGccc6	3	96424033 to 96424103	70	-	tRNA gene	nuclear encoded tRNA glycine 6 (anticodon CCC)
n-TKctt15	3	96428235 to 96428307	72	+	tRNA gene	nuclear encoded tRNA lysine 15 (anticodon CTT)
BC107364	3	96433788 to 96452306	18518	-	protein coding gene	cDNA sequence BC107364
Cpgi13560	3	96435651 to 96436195	544		CpG island	CpG island 13560
n-THgtg2	3	96435972 to 96436043	71	+	tRNA gene	nuclear encoded tRNA histidine 2 (anticodon GTG)
Gm26232	3	96450446 to 96450611	165	+	snRNA gene	predicted gene, 26232
n-TNgtt11	3	96451425 to 96451498	73	+	tRNA gene	nuclear encoded tRNA asparagine 11 (anticodon GTT)
n-THgtg7	3	96452495 to 96452566	71	+	tRNA gene	nuclear encoded tRNA histidine 7 (anticodon GTG)
Gm9207	3	96454835 to 96455949	1114	-	pseudogene	predicted gene 9207
n-THgtg9	3	96458070 to 96458141	71	-	tRNA gene	nuclear encoded tRNA histidine 9 (anticodon GTG)
Gm40099	3	96458995 to 96460336	1341	-	lncRNA gene	predicted gene, 40099
n-TNgtt13	3	96459138 to 96459211	73	-	tRNA gene	nuclear encoded tRNA asparagine 13 (anticodon GTT)
Rnu1b6	3	96460024 to 96460189	165	-	snRNA gene	U1b6 small nuclear RNA
Gm10685	3	96460186 to 96466925	6739	+	lincRNA gene	predicted gene 10685
Cpgi13561	3	96463902 to 96464297	395		CpG island	CpG island 13561
n-THgtg1	3	96463972 to 96464043	71	-	tRNA gene	nuclear encoded tRNA histidine 1 (anticodon GTG)
Gm43534	3	96464072 to 96466924	2852	-	unclassified gene	predicted gene 43534
Cpgi13562	3	96474833 to 96475589	756		CpG island	CpG island 13562
n-TQctg3	3	96479391 to 96479462	71	+	tRNA gene	nuclear encoded tRNA glutamine 3 (anticodon CTG)
Gm28001	3	96485161 to 96485277	116	+	rRNA gene	predicted gene, 28001
Gm25890	3	96486555 to 96486719	164	-	snRNA gene	predicted gene, 25890
Gm22614	3	96488729 to 96488893	164	+	snRNA gene	predicted gene, 22614
Cpgi13563	3	96497294 to 96497594	300		CpG island	CpG island 13563
n-TNgtt12	3	96497781 to 96497854	73	+	tRNA gene	nuclear encoded tRNA asparagine 12 (anticodon GTT)
n-TKctt16	3	96499512 to 96499584	72	-	tRNA gene	nuclear encoded tRNA lysine 16 (anticodon CTT)
Cpgi13564	3	96499723 to 96500593	870		CpG island	CpG island 13564
n-THgtg8	3	96500366 to 96500437	71	-	tRNA gene	nuclear encoded tRNA histidine 8 (anticodon GTG)
n-TGtcc7	3	96501009 to 96501080	71	-	tRNA gene	nuclear encoded tRNA glycine 7 (anticodon TCC)
n-TEctc13	3	96501447 to 96501518	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
Gm40100	3	96506390 to 96508780	2390	-	lncRNA gene	predicted gene, 40100