Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96261254-96361324

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr34610 3 96262316 to 96262327 11 - TSS region transcription start site region 34610
Tssr34611 3 96262329 to 96262349 20 - TSS region transcription start site region 34611
Tssr30708 3 96262437 to 96262467 30 + TSS region transcription start site region 30708
Cpgi13546 3 96262772 to 96263418 646 CpG island CpG island 13546
Hist2h4 3 96262934 to 96263317 383 - protein coding gene histone cluster 2, H4
Tssr34612 3 96263325 to 96263340 15 - TSS region transcription start site region 34612
Tssr30709 3 96263719 to 96263729 10 + TSS region transcription start site region 30709
Cpgi13547 3 96263728 to 96264004 276 CpG island CpG island 13547
Gm38227 3 96263785 to 96265386 1601 + unclassified gene predicted gene, 38227
Gm20628 3 96267075 to 96270289 3214 - antisense lncRNA gene predicted gene 20628
Cpgi13548 3 96268541 to 96268693 152 CpG island CpG island 13548
Hist2h3b 3 96268654 to 96269141 487 + protein coding gene histone cluster 2, H3b
Tssr30710 3 96268671 to 96268683 12 + TSS region transcription start site region 30710
Cpgi13549 3 96269088 to 96269410 322 CpG island CpG island 13549
Tssr34613 3 96269435 to 96269473 38 - TSS region transcription start site region 34613
Cpgi13550 3 96269573 to 96270281 708 CpG island CpG island 13550
Tssr30711 3 96269695 to 96269703 8 + TSS region transcription start site region 30711
Gm42743 3 96269721 to 96279001 9280 + lincRNA gene predicted gene 42743
Hist2h2bb 3 96269752 to 96270132 380 + protein coding gene histone cluster 2, H2bb
Tssr30712 3 96275027 to 96275032 5 + TSS region transcription start site region 30712
Cpgi13551 3 96277749 to 96278537 788 CpG island CpG island 13551
Fcgr1 3 96282909 to 96293969 11060 - protein coding gene Fc receptor, IgG, high affinity I
Tssr34614 3 96283830 to 96283849 19 - TSS region transcription start site region 34614
D3Nds11 3 96284431 to 96284619 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 11
Tssr34615 3 96285978 to 96285992 14 - TSS region transcription start site region 34615
Tssr34616 3 96287201 to 96287229 28 - TSS region transcription start site region 34616
Tssr34617 3 96290185 to 96290195 10 - TSS region transcription start site region 34617
Tssr34618 3 96290211 to 96290224 13 - TSS region transcription start site region 34618
Tssr34619 3 96292416 to 96292429 13 - TSS region transcription start site region 34619
Tssr34620 3 96293953 to 96293985 32 - TSS region transcription start site region 34620
Tssr34621 3 96293996 to 96294001 5 - TSS region transcription start site region 34621
n-TGccc2 3 96311254 to 96311324 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon CCC)
n-TNgtt4 3 96322074 to 96322147 73 + tRNA gene nuclear encoded tRNA asparagine 4 (anticodon GTT)
Gm24830 3 96328425 to 96328590 165 + snRNA gene predicted gene, 24830
n-TVcac10 3 96332740 to 96332812 72 + tRNA gene nuclear encoded tRNA valine 10 (anticodon CAC)
Cpgi13552 3 96333063 to 96333352 289 CpG island CpG island 13552
Cpgi13553 3 96334014 to 96334756 742 CpG island CpG island 13553
n-TNgtt5 3 96334615 to 96334688 73 - tRNA gene nuclear encoded tRNA asparagine 5 (anticodon GTT)
n-TNgtt1 3 96334971 to 96335044 73 + tRNA gene nuclear encoded tRNA asparagine 1 (anticodon GTT)
n-TQctg5 3 96341156 to 96341227 71 - tRNA gene nuclear encoded tRNA glutamine 5 (anticodon CTG)
Cpgi13554 3 96343500 to 96343780 280 CpG island CpG island 13554
Platr30 3 96345287 to 96358480 13193 + lincRNA gene pluripotency associated transcript 30
n-TEttc3 3 96346675 to 96346746 71 + tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
Gm26553 3 96349587 to 96357151 7564 - lincRNA gene predicted gene, 26553
n-TGccc5 3 96351167 to 96351237 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon CCC)
Rnu1b1 3 96359953 to 96360117 164 - snRNA gene U1b1 small nuclear RNA