Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96259493-97399501

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290 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr34605 3 96259727 to 96259738 11 - TSS region transcription start site region 34605
Tssr34606 3 96259751 to 96259764 13 - TSS region transcription start site region 34606
Tssr34607 3 96259774 to 96259789 15 - TSS region transcription start site region 34607
Tssr34608 3 96259791 to 96259796 5 - TSS region transcription start site region 34608
Tssr34609 3 96259809 to 96259815 6 - TSS region transcription start site region 34609
Tssr34610 3 96262316 to 96262327 11 - TSS region transcription start site region 34610
Tssr34611 3 96262329 to 96262349 20 - TSS region transcription start site region 34611
Tssr30708 3 96262437 to 96262467 30 + TSS region transcription start site region 30708
Cpgi13546 3 96262772 to 96263418 646 CpG island CpG island 13546
Hist2h4 3 96262934 to 96263317 383 - protein coding gene histone cluster 2, H4
Tssr34612 3 96263325 to 96263340 15 - TSS region transcription start site region 34612
Tssr30709 3 96263719 to 96263729 10 + TSS region transcription start site region 30709
Cpgi13547 3 96263728 to 96264004 276 CpG island CpG island 13547
Gm38227 3 96263785 to 96265386 1601 + unclassified gene predicted gene, 38227
Gm20628 3 96267075 to 96270289 3214 - antisense lncRNA gene predicted gene 20628
Cpgi13548 3 96268541 to 96268693 152 CpG island CpG island 13548
Hist2h3b 3 96268654 to 96269141 487 + protein coding gene histone cluster 2, H3b
Tssr30710 3 96268671 to 96268683 12 + TSS region transcription start site region 30710
Cpgi13549 3 96269088 to 96269410 322 CpG island CpG island 13549
Tssr34613 3 96269435 to 96269473 38 - TSS region transcription start site region 34613
Cpgi13550 3 96269573 to 96270281 708 CpG island CpG island 13550
Tssr30711 3 96269695 to 96269703 8 + TSS region transcription start site region 30711
Gm42743 3 96269721 to 96279001 9280 + lincRNA gene predicted gene 42743
Hist2h2bb 3 96269752 to 96270132 380 + protein coding gene histone cluster 2, H2bb
Tssr30712 3 96275027 to 96275032 5 + TSS region transcription start site region 30712
Cpgi13551 3 96277749 to 96278537 788 CpG island CpG island 13551
Fcgr1 3 96282909 to 96293969 11060 - protein coding gene Fc receptor, IgG, high affinity I
Tssr34614 3 96283830 to 96283849 19 - TSS region transcription start site region 34614
D3Nds11 3 96284431 to 96284619 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 11
Tssr34615 3 96285978 to 96285992 14 - TSS region transcription start site region 34615
Tssr34616 3 96287201 to 96287229 28 - TSS region transcription start site region 34616
Tssr34617 3 96290185 to 96290195 10 - TSS region transcription start site region 34617
Tssr34618 3 96290211 to 96290224 13 - TSS region transcription start site region 34618
Tssr34619 3 96292416 to 96292429 13 - TSS region transcription start site region 34619
Tssr34620 3 96293953 to 96293985 32 - TSS region transcription start site region 34620
Tssr34621 3 96293996 to 96294001 5 - TSS region transcription start site region 34621
n-TGccc2 3 96311254 to 96311324 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon CCC)
n-TNgtt4 3 96322074 to 96322147 73 + tRNA gene nuclear encoded tRNA asparagine 4 (anticodon GTT)
Gm24830 3 96328425 to 96328590 165 + snRNA gene predicted gene, 24830
n-TVcac10 3 96332740 to 96332812 72 + tRNA gene nuclear encoded tRNA valine 10 (anticodon CAC)
Cpgi13552 3 96333063 to 96333352 289 CpG island CpG island 13552
Cpgi13553 3 96334014 to 96334756 742 CpG island CpG island 13553
n-TNgtt5 3 96334615 to 96334688 73 - tRNA gene nuclear encoded tRNA asparagine 5 (anticodon GTT)
n-TNgtt1 3 96334971 to 96335044 73 + tRNA gene nuclear encoded tRNA asparagine 1 (anticodon GTT)
n-TQctg5 3 96341156 to 96341227 71 - tRNA gene nuclear encoded tRNA glutamine 5 (anticodon CTG)
Cpgi13554 3 96343500 to 96343780 280 CpG island CpG island 13554
Platr30 3 96345287 to 96358480 13193 + lincRNA gene pluripotency associated transcript 30
n-TEttc3 3 96346675 to 96346746 71 + tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
Gm26553 3 96349587 to 96357151 7564 - lincRNA gene predicted gene, 26553
n-TGccc5 3 96351167 to 96351237 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon CCC)
Rnu1b1 3 96359953 to 96360117 164 - snRNA gene U1b1 small nuclear RNA
Rnu1b2 3 96374021 to 96374185 164 + snRNA gene U1b2 small nuclear RNA
Gm17575 3 96375646 to 96388864 13218 - lincRNA gene predicted gene, 17575
Gm26689 3 96376976 to 96384563 7587 + lincRNA gene predicted gene, 26689
n-TGccc1 3 96382911 to 96382981 70 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon CCC)
n-TEttc2 3 96387405 to 96387476 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
Cpgi13555 3 96390428 to 96390676 248 CpG island CpG island 13555
n-TQctg4 3 96399059 to 96399130 71 - tRNA gene nuclear encoded tRNA glutamine 4 (anticodon CTG)
4930477E14Rik 3 96401150 to 96402014 864 - lincRNA gene RIKEN cDNA 4930477E14 gene
Cpgi13556 3 96401679 to 96402441 762 CpG island CpG island 13556
Tssr34622 3 96401995 to 96402005 10 - TSS region transcription start site region 34622
Tssr34623 3 96402010 to 96402017 7 - TSS region transcription start site region 34623
Tssr30713 3 96402096 to 96402110 14 + TSS region transcription start site region 30713
Tssr30714 3 96402118 to 96402121 3 + TSS region transcription start site region 30714
Tssr30715 3 96402124 to 96402136 12 + TSS region transcription start site region 30715
n-TNgtt10 3 96402218 to 96402291 73 + tRNA gene nuclear encoded tRNA asparagine 10 (anticodon GTT)
Gm26654 3 96402480 to 96402952 472 + lincRNA gene predicted gene, 26654
Cpgi13557 3 96404381 to 96404811 430 CpG island CpG island 13557
Pafah1b1-ps1 3 96407517 to 96409059 1542 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
Cpgi13558 3 96409327 to 96410262 935 CpG island CpG island 13558
n-THgtg6 3 96410069 to 96410140 71 + tRNA gene nuclear encoded tRNA histidine 6 (anticodon GTG)
Gm21960 3 96412910 to 96413361 451 - pseudogene predicted gene, 21960
Cpgi13559 3 96414163 to 96414951 788 CpG island CpG island 13559
Terc 3 96414437 to 96414833 396 - telomerase RNA gene telomerase RNA component
Tssr34624 3 96414825 to 96414839 14 - TSS region transcription start site region 34624
Tssr34625 3 96417732 to 96417759 27 - TSS region transcription start site region 34625
Gm24136 3 96422733 to 96422897 164 + snRNA gene predicted gene, 24136
n-TGccc6 3 96424033 to 96424103 70 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon CCC)
n-TKctt15 3 96428235 to 96428307 72 + tRNA gene nuclear encoded tRNA lysine 15 (anticodon CTT)
BC107364 3 96433788 to 96452306 18518 - protein coding gene cDNA sequence BC107364
Cpgi13560 3 96435651 to 96436195 544 CpG island CpG island 13560
n-THgtg2 3 96435972 to 96436043 71 + tRNA gene nuclear encoded tRNA histidine 2 (anticodon GTG)
Gm26232 3 96450446 to 96450611 165 + snRNA gene predicted gene, 26232
n-TNgtt11 3 96451425 to 96451498 73 + tRNA gene nuclear encoded tRNA asparagine 11 (anticodon GTT)
n-THgtg7 3 96452495 to 96452566 71 + tRNA gene nuclear encoded tRNA histidine 7 (anticodon GTG)
Gm9207 3 96454835 to 96455949 1114 - pseudogene predicted gene 9207
n-THgtg9 3 96458070 to 96458141 71 - tRNA gene nuclear encoded tRNA histidine 9 (anticodon GTG)
Gm40099 3 96458995 to 96460336 1341 - lncRNA gene predicted gene, 40099
n-TNgtt13 3 96459138 to 96459211 73 - tRNA gene nuclear encoded tRNA asparagine 13 (anticodon GTT)
Rnu1b6 3 96460024 to 96460189 165 - snRNA gene U1b6 small nuclear RNA
Gm10685 3 96460186 to 96466925 6739 + lincRNA gene predicted gene 10685
Cpgi13561 3 96463902 to 96464297 395 CpG island CpG island 13561
n-THgtg1 3 96463972 to 96464043 71 - tRNA gene nuclear encoded tRNA histidine 1 (anticodon GTG)
Gm43534 3 96464072 to 96466924 2852 - unclassified gene predicted gene 43534
Cpgi13562 3 96474833 to 96475589 756 CpG island CpG island 13562
n-TQctg3 3 96479391 to 96479462 71 + tRNA gene nuclear encoded tRNA glutamine 3 (anticodon CTG)
Gm28001 3 96485161 to 96485277 116 + rRNA gene predicted gene, 28001
Gm25890 3 96486555 to 96486719 164 - snRNA gene predicted gene, 25890
Gm22614 3 96488729 to 96488893 164 + snRNA gene predicted gene, 22614
Cpgi13563 3 96497294 to 96497594 300 CpG island CpG island 13563
n-TNgtt12 3 96497781 to 96497854 73 + tRNA gene nuclear encoded tRNA asparagine 12 (anticodon GTT)
n-TKctt16 3 96499512 to 96499584 72 - tRNA gene nuclear encoded tRNA lysine 16 (anticodon CTT)
Cpgi13564 3 96499723 to 96500593 870 CpG island CpG island 13564
n-THgtg8 3 96500366 to 96500437 71 - tRNA gene nuclear encoded tRNA histidine 8 (anticodon GTG)
n-TGtcc7 3 96501009 to 96501080 71 - tRNA gene nuclear encoded tRNA glycine 7 (anticodon TCC)
n-TEctc13 3 96501447 to 96501518 71 - tRNA gene nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
Gm40100 3 96506390 to 96508780 2390 - lncRNA gene predicted gene, 40100
Tssr30716 3 96520453 to 96520462 9 + TSS region transcription start site region 30716
Tssr30717 3 96525163 to 96525186 23 + TSS region transcription start site region 30717
Hjv 3 96525172 to 96529210 4038 + protein coding gene hemojuvelin BMP co-receptor
Tssr30718 3 96525192 to 96525219 27 + TSS region transcription start site region 30718
Cpgi13565 3 96526828 to 96527630 802 CpG island CpG island 13565
Cpgi13566 3 96528302 to 96528589 287 CpG island CpG island 13566
Tssr30719 3 96528612 to 96528614 2 + TSS region transcription start site region 30719
Gm15441 3 96555768 to 96566801 11033 - antisense lncRNA gene predicted gene 15441
Tssr34626 3 96556250 to 96556257 7 - TSS region transcription start site region 34626
Cpgi13567 3 96557633 to 96558000 367 CpG island CpG island 13567
Tssr34627 3 96557639 to 96557699 60 - TSS region transcription start site region 34627
Tssr34628 3 96557789 to 96557802 13 - TSS region transcription start site region 34628
Tssr30720 3 96557950 to 96557968 18 + TSS region transcription start site region 30720
Txnip 3 96557957 to 96561857 3900 + protein coding gene thioredoxin interacting protein
Tssr30721 3 96557985 to 96557989 4 + TSS region transcription start site region 30721
Tssr30722 3 96559114 to 96559144 30 + TSS region transcription start site region 30722
Tssr30723 3 96559494 to 96559504 10 + TSS region transcription start site region 30723
Tssr30724 3 96559584 to 96559597 13 + TSS region transcription start site region 30724
Tssr30725 3 96559633 to 96559682 49 + TSS region transcription start site region 30725
Tssr30726 3 96559697 to 96559711 14 + TSS region transcription start site region 30726
Tssr30727 3 96559743 to 96559756 13 + TSS region transcription start site region 30727
Tssr30728 3 96559937 to 96559974 37 + TSS region transcription start site region 30728
Tssr30729 3 96560242 to 96560263 21 + TSS region transcription start site region 30729
Tssr30730 3 96560280 to 96560293 13 + TSS region transcription start site region 30730
Tssr30731 3 96560297 to 96560318 21 + TSS region transcription start site region 30731
Tssr30732 3 96560321 to 96560343 22 + TSS region transcription start site region 30732
Tssr30733 3 96561331 to 96561347 16 + TSS region transcription start site region 30733
Cpgi13568 3 96569620 to 96570015 395 CpG island CpG island 13568
Cpgi13569 3 96576628 to 96576792 164 CpG island CpG island 13569
Tssr30734 3 96576978 to 96576992 14 + TSS region transcription start site region 30734
Gm16253 3 96576984 to 96580663 3679 + protein coding gene predicted gene 16253
Tssr30735 3 96577167 to 96577184 17 + TSS region transcription start site region 30735
Polr3gl 3 96577872 to 96594181 16309 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide G like
Tssr34629 3 96579912 to 96579941 29 - TSS region transcription start site region 34629
Tssr34630 3 96579944 to 96579968 24 - TSS region transcription start site region 34630
Tssr34631 3 96580137 to 96580148 11 - TSS region transcription start site region 34631
Tssr34632 3 96580187 to 96580203 16 - TSS region transcription start site region 34632
Tssr34633 3 96580213 to 96580231 18 - TSS region transcription start site region 34633
Cpgi13570 3 96580313 to 96580525 212 CpG island CpG island 13570
Tssr34634 3 96582595 to 96582599 4 - TSS region transcription start site region 34634
Tssr34635 3 96592741 to 96592790 49 - TSS region transcription start site region 34635
Cpgi13571 3 96593819 to 96594335 516 CpG island CpG island 13571
Tssr34636 3 96594128 to 96594176 48 - TSS region transcription start site region 34636
Tssr30736 3 96596593 to 96596609 16 + TSS region transcription start site region 30736
Tssr30737 3 96596613 to 96596626 13 + TSS region transcription start site region 30737
Tssr30738 3 96596628 to 96596662 34 + TSS region transcription start site region 30738
Ankrd34a 3 96596636 to 96599775 3139 + protein coding gene ankyrin repeat domain 34A
Tssr30739 3 96596701 to 96596712 11 + TSS region transcription start site region 30739
Cpgi13572 3 96597043 to 96598823 1780 CpG island CpG island 13572
Cpgi13573 3 96600897 to 96601712 815 CpG island CpG island 13573
Tssr30740 3 96601084 to 96601139 55 + TSS region transcription start site region 30740
Lix1l 3 96601133 to 96625352 24219 + protein coding gene Lix1-like
6330549D23Rik 3 96606662 to 96629819 23157 - pseudogene RIKEN cDNA 6330549D23 gene
Tssr30741 3 96618597 to 96618628 31 + TSS region transcription start site region 30741
Cpgi13574 3 96629712 to 96630173 461 CpG island CpG island 13574
Tssr34637 3 96629788 to 96629828 40 - TSS region transcription start site region 34637
Tssr30742 3 96629887 to 96629913 26 + TSS region transcription start site region 30742
Tssr30743 3 96629919 to 96629955 36 + TSS region transcription start site region 30743
Rbm8a 3 96629933 to 96633791 3858 + protein coding gene RNA binding motif protein 8a
Tssr30744 3 96630168 to 96630200 32 + TSS region transcription start site region 30744
Cpgi13575 3 96635268 to 96636195 927 CpG island CpG island 13575
Pex11b 3 96635376 to 96645366 9990 + protein coding gene peroxisomal biogenesis factor 11 beta
Tssr30745 3 96635462 to 96635475 13 + TSS region transcription start site region 30745
Gm42957 3 96635474 to 96653101 17627 + protein coding gene predicted gene 42957
Tssr30746 3 96635617 to 96635686 69 + TSS region transcription start site region 30746
Tssr30747 3 96635817 to 96635837 20 + TSS region transcription start site region 30747
Tssr30748 3 96635840 to 96635868 28 + TSS region transcription start site region 30748
Eae3 3 96641414 to 96641521 107 QTL experimental allergic encephalomyelitis susceptibility 3
D3Mit101 3 96641414 to 96641521 107 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 101
Tssr30749 3 96643809 to 96643811 2 + TSS region transcription start site region 30749
Tssr30750 3 96645579 to 96645608 29 + TSS region transcription start site region 30750
Itga10 3 96645584 to 96664519 18935 + protein coding gene integrin, alpha 10
Rpl21-ps11 3 96666503 to 96666982 479 - pseudogene ribosomal protein L21, pseudogene 11
Tssr34638 3 96667023 to 96667033 10 - TSS region transcription start site region 34638
Cpgi13576 3 96670006 to 96670539 533 CpG island CpG island 13576
Ankrd35 3 96670131 to 96691032 20901 + protein coding gene ankyrin repeat domain 35
Tssr30751 3 96670298 to 96670346 48 + TSS region transcription start site region 30751
Tssr30752 3 96676242 to 96676255 13 + TSS region transcription start site region 30752
Cpgi13577 3 96684589 to 96685192 603 CpG island CpG island 13577
C230057H02Rik 3 96693858 to 96697011 3153 unclassified gene RIKEN cDNA C230057H02 gene
Cpgi13578 3 96696311 to 96697699 1388 CpG island CpG island 13578
Tssr30753 3 96696379 to 96696396 17 + TSS region transcription start site region 30753
Pias3 3 96696384 to 96706070 9686 + protein coding gene protein inhibitor of activated STAT 3
Tssr30754 3 96696400 to 96696477 77 + TSS region transcription start site region 30754
Tssr30755 3 96697076 to 96697090 14 + TSS region transcription start site region 30755
Tssr30756 3 96697100 to 96697165 65 + TSS region transcription start site region 30756
Tssr30757 3 96699251 to 96699267 16 + TSS region transcription start site region 30757
Tssr30758 3 96699302 to 96699304 2 + TSS region transcription start site region 30758
Nudt17 3 96706067 to 96708562 2495 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 17
Cpgi13579 3 96708178 to 96708646 468 CpG island CpG island 13579
Tssr34639 3 96708524 to 96708553 29 - TSS region transcription start site region 34639
Polr3c 3 96711518 to 96727493 15975 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide C
Cpgi13580 3 96719228 to 96719497 269 CpG island CpG island 13580