Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96174391-96784462

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273 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sf3b4 3 96172506 to 96177564 5058 + protein coding gene splicing factor 3b, subunit 4
Gm22027 3 96176361 to 96176487 126 + snoRNA gene predicted gene, 22027
Cpgi13538 3 96181103 to 96181334 231 CpG island CpG island 13538
Tssr30694 3 96181156 to 96181167 11 + TSS region transcription start site region 30694
Tssr30695 3 96181178 to 96181233 55 + TSS region transcription start site region 30695
Sv2a 3 96181227 to 96195183 13956 + protein coding gene synaptic vesicle glycoprotein 2 a
Tssr30696 3 96184732 to 96184759 27 + TSS region transcription start site region 30696
Cpgi13539 3 96184990 to 96185518 528 CpG island CpG island 13539
Tssr30697 3 96195396 to 96195406 10 + TSS region transcription start site region 30697
Tssr30698 3 96195428 to 96195436 8 + TSS region transcription start site region 30698
Bola1 3 96196583 to 96198483 1900 - protein coding gene bolA-like 1 (E. coli)
Cpgi13540 3 96196668 to 96197747 1079 CpG island CpG island 13540
Tssr34593 3 96197580 to 96197634 54 - TSS region transcription start site region 34593
Tssr34594 3 96198460 to 96198484 24 - TSS region transcription start site region 34594
Gm15444 3 96209627 to 96220168 10541 - antisense lncRNA gene predicted gene 15444
Tssr34595 3 96209655 to 96209658 3 - TSS region transcription start site region 34595
Tssr30699 3 96219780 to 96219789 9 + TSS region transcription start site region 30699
Cpgi13541 3 96219780 to 96220496 716 CpG island CpG island 13541
Tssr30700 3 96219831 to 96219842 11 + TSS region transcription start site region 30700
Tssr30701 3 96219858 to 96219873 15 + TSS region transcription start site region 30701
Tssr30702 3 96219877 to 96219900 23 + TSS region transcription start site region 30702
Hist2h2ab 3 96219916 to 96220353 437 + protein coding gene histone cluster 2, H2ab
Tssr34596 3 96219937 to 96219946 9 - TSS region transcription start site region 34596
Hist2h2ac 3 96220413 to 96220880 467 - protein coding gene histone cluster 2, H2ac
Gm44492 3 96220501 to 96220641 140 + miRNA gene predicted gene, 44492
Tssr34597 3 96220881 to 96220899 18 - TSS region transcription start site region 34597
Tssr30703 3 96221111 to 96221134 23 + TSS region transcription start site region 30703
Hist2h2be 3 96221119 to 96223738 2619 + protein coding gene histone cluster 2, H2be
Tssr30704 3 96221156 to 96221167 11 + TSS region transcription start site region 30704
Cpgi13542 3 96221210 to 96221607 397 CpG island CpG island 13542
Cpgi13543 3 96238220 to 96238474 254 CpG island CpG island 13543
Hist2h3c2 3 96238479 to 96239127 648 - protein coding gene histone cluster 2, H3c2
Tssr34598 3 96238981 to 96238985 4 - TSS region transcription start site region 34598
Gm20632 3 96239393 to 96241819 2426 + antisense lncRNA gene predicted gene 20632
Hist2h2aa2 3 96239749 to 96240276 527 - protein coding gene histone cluster 2, H2aa2
Gm47311 3 96239868 to 96240005 137 + miRNA gene predicted gene, 47311
Cpgi13544 3 96240281 to 96240610 329 CpG island CpG island 13544
Tssr34599 3 96240317 to 96240338 21 - TSS region transcription start site region 34599
Gm20633 3 96243550 to 96246380 2830 - antisense lncRNA gene predicted gene 20633
Cpgi13545 3 96245071 to 96245547 476 CpG island CpG island 13545
Tssr34600 3 96245217 to 96245222 5 - TSS region transcription start site region 34600
Tssr34601 3 96245306 to 96245318 12 - TSS region transcription start site region 34601
Hist2h2aa1 3 96245497 to 96246052 555 + protein coding gene histone cluster 2, H2aa1
Tssr30705 3 96245530 to 96245546 16 + TSS region transcription start site region 30705
Gm20634 3 96245554 to 96248509 2955 + unclassified non-coding RNA gene predicted gene 20634
Gm47313 3 96245826 to 96245963 137 - miRNA gene predicted gene, 47313
Hist2h3c1 3 96246685 to 96247348 663 + protein coding gene histone cluster 2, H3c1
Tssr30706 3 96246836 to 96246850 14 + TSS region transcription start site region 30706
Tssr30707 3 96247830 to 96247874 44 + TSS region transcription start site region 30707
Gm20627 3 96254619 to 96256277 1658 - lncRNA gene predicted gene 20627
Tssr34602 3 96256244 to 96256255 11 - TSS region transcription start site region 34602
Tssr34603 3 96256261 to 96256268 7 - TSS region transcription start site region 34603
Tssr34604 3 96256271 to 96256307 36 - TSS region transcription start site region 34604
Tssr34605 3 96259727 to 96259738 11 - TSS region transcription start site region 34605
Tssr34606 3 96259751 to 96259764 13 - TSS region transcription start site region 34606
Tssr34607 3 96259774 to 96259789 15 - TSS region transcription start site region 34607
Tssr34608 3 96259791 to 96259796 5 - TSS region transcription start site region 34608
Tssr34609 3 96259809 to 96259815 6 - TSS region transcription start site region 34609
Tssr34610 3 96262316 to 96262327 11 - TSS region transcription start site region 34610
Tssr34611 3 96262329 to 96262349 20 - TSS region transcription start site region 34611
Tssr30708 3 96262437 to 96262467 30 + TSS region transcription start site region 30708
Cpgi13546 3 96262772 to 96263418 646 CpG island CpG island 13546
Hist2h4 3 96262934 to 96263317 383 - protein coding gene histone cluster 2, H4
Tssr34612 3 96263325 to 96263340 15 - TSS region transcription start site region 34612
Tssr30709 3 96263719 to 96263729 10 + TSS region transcription start site region 30709
Cpgi13547 3 96263728 to 96264004 276 CpG island CpG island 13547
Gm38227 3 96263785 to 96265386 1601 + unclassified gene predicted gene, 38227
Gm20628 3 96267075 to 96270289 3214 - antisense lncRNA gene predicted gene 20628
Cpgi13548 3 96268541 to 96268693 152 CpG island CpG island 13548
Hist2h3b 3 96268654 to 96269141 487 + protein coding gene histone cluster 2, H3b
Tssr30710 3 96268671 to 96268683 12 + TSS region transcription start site region 30710
Cpgi13549 3 96269088 to 96269410 322 CpG island CpG island 13549
Tssr34613 3 96269435 to 96269473 38 - TSS region transcription start site region 34613
Cpgi13550 3 96269573 to 96270281 708 CpG island CpG island 13550
Tssr30711 3 96269695 to 96269703 8 + TSS region transcription start site region 30711
Gm42743 3 96269721 to 96279001 9280 + lincRNA gene predicted gene 42743
Hist2h2bb 3 96269752 to 96270132 380 + protein coding gene histone cluster 2, H2bb
Tssr30712 3 96275027 to 96275032 5 + TSS region transcription start site region 30712
Cpgi13551 3 96277749 to 96278537 788 CpG island CpG island 13551
Fcgr1 3 96282909 to 96293969 11060 - protein coding gene Fc receptor, IgG, high affinity I
Tssr34614 3 96283830 to 96283849 19 - TSS region transcription start site region 34614
D3Nds11 3 96284431 to 96284619 188 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 11
Tssr34615 3 96285978 to 96285992 14 - TSS region transcription start site region 34615
Tssr34616 3 96287201 to 96287229 28 - TSS region transcription start site region 34616
Tssr34617 3 96290185 to 96290195 10 - TSS region transcription start site region 34617
Tssr34618 3 96290211 to 96290224 13 - TSS region transcription start site region 34618
Tssr34619 3 96292416 to 96292429 13 - TSS region transcription start site region 34619
Tssr34620 3 96293953 to 96293985 32 - TSS region transcription start site region 34620
Tssr34621 3 96293996 to 96294001 5 - TSS region transcription start site region 34621
n-TGccc2 3 96311254 to 96311324 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon CCC)
n-TNgtt4 3 96322074 to 96322147 73 + tRNA gene nuclear encoded tRNA asparagine 4 (anticodon GTT)
Gm24830 3 96328425 to 96328590 165 + snRNA gene predicted gene, 24830
n-TVcac10 3 96332740 to 96332812 72 + tRNA gene nuclear encoded tRNA valine 10 (anticodon CAC)
Cpgi13552 3 96333063 to 96333352 289 CpG island CpG island 13552
Cpgi13553 3 96334014 to 96334756 742 CpG island CpG island 13553
n-TNgtt5 3 96334615 to 96334688 73 - tRNA gene nuclear encoded tRNA asparagine 5 (anticodon GTT)
n-TNgtt1 3 96334971 to 96335044 73 + tRNA gene nuclear encoded tRNA asparagine 1 (anticodon GTT)
n-TQctg5 3 96341156 to 96341227 71 - tRNA gene nuclear encoded tRNA glutamine 5 (anticodon CTG)
Cpgi13554 3 96343500 to 96343780 280 CpG island CpG island 13554
Platr30 3 96345287 to 96358480 13193 + lincRNA gene pluripotency associated transcript 30
n-TEttc3 3 96346675 to 96346746 71 + tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC)
Gm26553 3 96349587 to 96357151 7564 - lincRNA gene predicted gene, 26553
n-TGccc5 3 96351167 to 96351237 70 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon CCC)
Rnu1b1 3 96359953 to 96360117 164 - snRNA gene U1b1 small nuclear RNA
Rnu1b2 3 96374021 to 96374185 164 + snRNA gene U1b2 small nuclear RNA
Gm17575 3 96375646 to 96388864 13218 - lincRNA gene predicted gene, 17575
Gm26689 3 96376976 to 96384563 7587 + lincRNA gene predicted gene, 26689
n-TGccc1 3 96382911 to 96382981 70 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon CCC)
n-TEttc2 3 96387405 to 96387476 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon TTC)
Cpgi13555 3 96390428 to 96390676 248 CpG island CpG island 13555
n-TQctg4 3 96399059 to 96399130 71 - tRNA gene nuclear encoded tRNA glutamine 4 (anticodon CTG)
4930477E14Rik 3 96401150 to 96402014 864 - lincRNA gene RIKEN cDNA 4930477E14 gene
Cpgi13556 3 96401679 to 96402441 762 CpG island CpG island 13556
Tssr34622 3 96401995 to 96402005 10 - TSS region transcription start site region 34622
Tssr34623 3 96402010 to 96402017 7 - TSS region transcription start site region 34623
Tssr30713 3 96402096 to 96402110 14 + TSS region transcription start site region 30713
Tssr30714 3 96402118 to 96402121 3 + TSS region transcription start site region 30714
Tssr30715 3 96402124 to 96402136 12 + TSS region transcription start site region 30715
n-TNgtt10 3 96402218 to 96402291 73 + tRNA gene nuclear encoded tRNA asparagine 10 (anticodon GTT)
Gm26654 3 96402480 to 96402952 472 + lincRNA gene predicted gene, 26654
Cpgi13557 3 96404381 to 96404811 430 CpG island CpG island 13557
Pafah1b1-ps1 3 96407517 to 96409059 1542 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
Cpgi13558 3 96409327 to 96410262 935 CpG island CpG island 13558
n-THgtg6 3 96410069 to 96410140 71 + tRNA gene nuclear encoded tRNA histidine 6 (anticodon GTG)
Gm21960 3 96412910 to 96413361 451 - pseudogene predicted gene, 21960
Cpgi13559 3 96414163 to 96414951 788 CpG island CpG island 13559
Terc 3 96414437 to 96414833 396 - telomerase RNA gene telomerase RNA component
Tssr34624 3 96414825 to 96414839 14 - TSS region transcription start site region 34624
Tssr34625 3 96417732 to 96417759 27 - TSS region transcription start site region 34625
Gm24136 3 96422733 to 96422897 164 + snRNA gene predicted gene, 24136
n-TGccc6 3 96424033 to 96424103 70 - tRNA gene nuclear encoded tRNA glycine 6 (anticodon CCC)
n-TKctt15 3 96428235 to 96428307 72 + tRNA gene nuclear encoded tRNA lysine 15 (anticodon CTT)
BC107364 3 96433788 to 96452306 18518 - protein coding gene cDNA sequence BC107364
Cpgi13560 3 96435651 to 96436195 544 CpG island CpG island 13560
n-THgtg2 3 96435972 to 96436043 71 + tRNA gene nuclear encoded tRNA histidine 2 (anticodon GTG)
Gm26232 3 96450446 to 96450611 165 + snRNA gene predicted gene, 26232
n-TNgtt11 3 96451425 to 96451498 73 + tRNA gene nuclear encoded tRNA asparagine 11 (anticodon GTT)
n-THgtg7 3 96452495 to 96452566 71 + tRNA gene nuclear encoded tRNA histidine 7 (anticodon GTG)
Gm9207 3 96454835 to 96455949 1114 - pseudogene predicted gene 9207
n-THgtg9 3 96458070 to 96458141 71 - tRNA gene nuclear encoded tRNA histidine 9 (anticodon GTG)
Gm40099 3 96458995 to 96460336 1341 - lncRNA gene predicted gene, 40099
n-TNgtt13 3 96459138 to 96459211 73 - tRNA gene nuclear encoded tRNA asparagine 13 (anticodon GTT)
Rnu1b6 3 96460024 to 96460189 165 - snRNA gene U1b6 small nuclear RNA
Gm10685 3 96460186 to 96466925 6739 + lincRNA gene predicted gene 10685
Cpgi13561 3 96463902 to 96464297 395 CpG island CpG island 13561
n-THgtg1 3 96463972 to 96464043 71 - tRNA gene nuclear encoded tRNA histidine 1 (anticodon GTG)
Gm43534 3 96464072 to 96466924 2852 - unclassified gene predicted gene 43534
Cpgi13562 3 96474833 to 96475589 756 CpG island CpG island 13562
n-TQctg3 3 96479391 to 96479462 71 + tRNA gene nuclear encoded tRNA glutamine 3 (anticodon CTG)
Gm28001 3 96485161 to 96485277 116 + rRNA gene predicted gene, 28001
Gm25890 3 96486555 to 96486719 164 - snRNA gene predicted gene, 25890
Gm22614 3 96488729 to 96488893 164 + snRNA gene predicted gene, 22614
Cpgi13563 3 96497294 to 96497594 300 CpG island CpG island 13563
n-TNgtt12 3 96497781 to 96497854 73 + tRNA gene nuclear encoded tRNA asparagine 12 (anticodon GTT)
n-TKctt16 3 96499512 to 96499584 72 - tRNA gene nuclear encoded tRNA lysine 16 (anticodon CTT)
Cpgi13564 3 96499723 to 96500593 870 CpG island CpG island 13564
n-THgtg8 3 96500366 to 96500437 71 - tRNA gene nuclear encoded tRNA histidine 8 (anticodon GTG)
n-TGtcc7 3 96501009 to 96501080 71 - tRNA gene nuclear encoded tRNA glycine 7 (anticodon TCC)
n-TEctc13 3 96501447 to 96501518 71 - tRNA gene nuclear encoded tRNA glutamic acid 13 (anticodon CTC)
Gm40100 3 96506390 to 96508780 2390 - lncRNA gene predicted gene, 40100
Tssr30716 3 96520453 to 96520462 9 + TSS region transcription start site region 30716
Tssr30717 3 96525163 to 96525186 23 + TSS region transcription start site region 30717
Hjv 3 96525172 to 96529210 4038 + protein coding gene hemojuvelin BMP co-receptor
Tssr30718 3 96525192 to 96525219 27 + TSS region transcription start site region 30718
Cpgi13565 3 96526828 to 96527630 802 CpG island CpG island 13565
Cpgi13566 3 96528302 to 96528589 287 CpG island CpG island 13566
Tssr30719 3 96528612 to 96528614 2 + TSS region transcription start site region 30719
Gm15441 3 96555768 to 96566801 11033 - antisense lncRNA gene predicted gene 15441
Tssr34626 3 96556250 to 96556257 7 - TSS region transcription start site region 34626
Cpgi13567 3 96557633 to 96558000 367 CpG island CpG island 13567
Tssr34627 3 96557639 to 96557699 60 - TSS region transcription start site region 34627
Tssr34628 3 96557789 to 96557802 13 - TSS region transcription start site region 34628
Tssr30720 3 96557950 to 96557968 18 + TSS region transcription start site region 30720
Txnip 3 96557957 to 96561857 3900 + protein coding gene thioredoxin interacting protein
Tssr30721 3 96557985 to 96557989 4 + TSS region transcription start site region 30721
Tssr30722 3 96559114 to 96559144 30 + TSS region transcription start site region 30722
Tssr30723 3 96559494 to 96559504 10 + TSS region transcription start site region 30723
Tssr30724 3 96559584 to 96559597 13 + TSS region transcription start site region 30724
Tssr30725 3 96559633 to 96559682 49 + TSS region transcription start site region 30725
Tssr30726 3 96559697 to 96559711 14 + TSS region transcription start site region 30726
Tssr30727 3 96559743 to 96559756 13 + TSS region transcription start site region 30727
Tssr30728 3 96559937 to 96559974 37 + TSS region transcription start site region 30728
Tssr30729 3 96560242 to 96560263 21 + TSS region transcription start site region 30729
Tssr30730 3 96560280 to 96560293 13 + TSS region transcription start site region 30730
Tssr30731 3 96560297 to 96560318 21 + TSS region transcription start site region 30731
Tssr30732 3 96560321 to 96560343 22 + TSS region transcription start site region 30732
Tssr30733 3 96561331 to 96561347 16 + TSS region transcription start site region 30733
Cpgi13568 3 96569620 to 96570015 395 CpG island CpG island 13568
Cpgi13569 3 96576628 to 96576792 164 CpG island CpG island 13569
Tssr30734 3 96576978 to 96576992 14 + TSS region transcription start site region 30734
Gm16253 3 96576984 to 96580663 3679 + protein coding gene predicted gene 16253
Tssr30735 3 96577167 to 96577184 17 + TSS region transcription start site region 30735
Polr3gl 3 96577872 to 96594181 16309 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide G like
Tssr34629 3 96579912 to 96579941 29 - TSS region transcription start site region 34629
Tssr34630 3 96579944 to 96579968 24 - TSS region transcription start site region 34630
Tssr34631 3 96580137 to 96580148 11 - TSS region transcription start site region 34631
Tssr34632 3 96580187 to 96580203 16 - TSS region transcription start site region 34632
Tssr34633 3 96580213 to 96580231 18 - TSS region transcription start site region 34633
Cpgi13570 3 96580313 to 96580525 212 CpG island CpG island 13570
Tssr34634 3 96582595 to 96582599 4 - TSS region transcription start site region 34634