Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96131227-96245183

55 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Otud7b	3	96104527 to 96161129	56602	+	protein coding gene	OTU domain containing 7B
Cpgi13536	3	96161344 to 96161533	189		CpG island	CpG island 13536
Tssr30685	3	96161956 to 96161977	21	+	TSS region	transcription start site region 30685
Tssr30686	3	96161981 to 96162023	42	+	TSS region	transcription start site region 30686
Mtmr11	3	96162004 to 96171718	9714	+	protein coding gene	myotubularin related protein 11
Tssr30687	3	96162049 to 96162063	14	+	TSS region	transcription start site region 30687
Tssr30688	3	96162447 to 96162477	30	+	TSS region	transcription start site region 30688
Gm17690	3	96167464 to 96172416	4952	-	antisense lncRNA gene	predicted gene, 17690
Cpgi13537	3	96172026 to 96173183	1157		CpG island	CpG island 13537
Tssr30689	3	96172327 to 96172338	11	+	TSS region	transcription start site region 30689
Tssr30690	3	96172352 to 96172368	16	+	TSS region	transcription start site region 30690
Tssr34592	3	96172384 to 96172462	78	-	TSS region	transcription start site region 34592
Sf3b4	3	96172506 to 96177564	5058	+	protein coding gene	splicing factor 3b, subunit 4
Tssr30691	3	96172507 to 96172530	23	+	TSS region	transcription start site region 30691
Tssr30692	3	96172534 to 96172564	30	+	TSS region	transcription start site region 30692
Tssr30693	3	96173982 to 96173996	14	+	TSS region	transcription start site region 30693
Gm22027	3	96176361 to 96176487	126	+	snoRNA gene	predicted gene, 22027
Cpgi13538	3	96181103 to 96181334	231		CpG island	CpG island 13538
Tssr30694	3	96181156 to 96181167	11	+	TSS region	transcription start site region 30694
Tssr30695	3	96181178 to 96181233	55	+	TSS region	transcription start site region 30695
Sv2a	3	96181227 to 96195183	13956	+	protein coding gene	synaptic vesicle glycoprotein 2 a
Tssr30696	3	96184732 to 96184759	27	+	TSS region	transcription start site region 30696
Cpgi13539	3	96184990 to 96185518	528		CpG island	CpG island 13539
Tssr30697	3	96195396 to 96195406	10	+	TSS region	transcription start site region 30697
Tssr30698	3	96195428 to 96195436	8	+	TSS region	transcription start site region 30698
Bola1	3	96196583 to 96198483	1900	-	protein coding gene	bolA-like 1 (E. coli)
Cpgi13540	3	96196668 to 96197747	1079		CpG island	CpG island 13540
Tssr34593	3	96197580 to 96197634	54	-	TSS region	transcription start site region 34593
Tssr34594	3	96198460 to 96198484	24	-	TSS region	transcription start site region 34594
Gm15444	3	96209627 to 96220168	10541	-	antisense lncRNA gene	predicted gene 15444
Tssr34595	3	96209655 to 96209658	3	-	TSS region	transcription start site region 34595
Cpgi13541	3	96219780 to 96220496	716		CpG island	CpG island 13541
Tssr30699	3	96219780 to 96219789	9	+	TSS region	transcription start site region 30699
Tssr30700	3	96219831 to 96219842	11	+	TSS region	transcription start site region 30700
Tssr30701	3	96219858 to 96219873	15	+	TSS region	transcription start site region 30701
Tssr30702	3	96219877 to 96219900	23	+	TSS region	transcription start site region 30702
Hist2h2ab	3	96219916 to 96220353	437	+	protein coding gene	histone cluster 2, H2ab
Tssr34596	3	96219937 to 96219946	9	-	TSS region	transcription start site region 34596
Hist2h2ac	3	96220413 to 96220880	467	-	protein coding gene	histone cluster 2, H2ac
Gm44492	3	96220501 to 96220641	140	+	miRNA gene	predicted gene, 44492
Tssr34597	3	96220881 to 96220899	18	-	TSS region	transcription start site region 34597
Tssr30703	3	96221111 to 96221134	23	+	TSS region	transcription start site region 30703
Hist2h2be	3	96221119 to 96223738	2619	+	protein coding gene	histone cluster 2, H2be
Tssr30704	3	96221156 to 96221167	11	+	TSS region	transcription start site region 30704
Cpgi13542	3	96221210 to 96221607	397		CpG island	CpG island 13542
Cpgi13543	3	96238220 to 96238474	254		CpG island	CpG island 13543
Hist2h3c2	3	96238479 to 96239127	648	-	protein coding gene	histone cluster 2, H3c2
Tssr34598	3	96238981 to 96238985	4	-	TSS region	transcription start site region 34598
Gm20632	3	96239393 to 96241819	2426	+	antisense lncRNA gene	predicted gene 20632
Hist2h2aa2	3	96239749 to 96240276	527	-	protein coding gene	histone cluster 2, H2aa2
Gm47311	3	96239868 to 96240005	137	+	miRNA gene	predicted gene, 47311
Cpgi13544	3	96240281 to 96240610	329		CpG island	CpG island 13544
Tssr34599	3	96240317 to 96240338	21	-	TSS region	transcription start site region 34599
Gm20633	3	96243550 to 96246380	2830	-	antisense lncRNA gene	predicted gene 20633
Cpgi13545	3	96245071 to 96245547	476		CpG island	CpG island 13545