Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:96062447-96262477

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr30677 3 96086690 to 96086735 45 + TSS region transcription start site region 30677
Gm43554 3 96086871 to 96087056 185 + pseudogene predicted gene 43554
Tssr34591 3 96094297 to 96094332 35 - TSS region transcription start site region 34591
Gm30044 3 96098167 to 96104358 6191 - lncRNA gene predicted gene, 30044
Cpgi13535 3 96104178 to 96105107 929 CpG island CpG island 13535
Tssr30678 3 96104478 to 96104489 11 + TSS region transcription start site region 30678
Tssr30679 3 96104498 to 96104571 73 + TSS region transcription start site region 30679
Otud7b 3 96104527 to 96161129 56602 + protein coding gene OTU domain containing 7B
Tssr30680 3 96104816 to 96104827 11 + TSS region transcription start site region 30680
Tssr30681 3 96108521 to 96108531 10 + TSS region transcription start site region 30681
Tssr30682 3 96108534 to 96108566 32 + TSS region transcription start site region 30682
Tssr30683 3 96108569 to 96108586 17 + TSS region transcription start site region 30683
Tssr30684 3 96108588 to 96108612 24 + TSS region transcription start site region 30684
Cpgi13536 3 96161344 to 96161533 189 CpG island CpG island 13536
Tssr30685 3 96161956 to 96161977 21 + TSS region transcription start site region 30685
Tssr30686 3 96161981 to 96162023 42 + TSS region transcription start site region 30686
Mtmr11 3 96162004 to 96171718 9714 + protein coding gene myotubularin related protein 11
Tssr30687 3 96162049 to 96162063 14 + TSS region transcription start site region 30687
Tssr30688 3 96162447 to 96162477 30 + TSS region transcription start site region 30688
Gm17690 3 96167464 to 96172416 4952 - antisense lncRNA gene predicted gene, 17690
Cpgi13537 3 96172026 to 96173183 1157 CpG island CpG island 13537
Tssr30689 3 96172327 to 96172338 11 + TSS region transcription start site region 30689
Tssr30690 3 96172352 to 96172368 16 + TSS region transcription start site region 30690
Tssr34592 3 96172384 to 96172462 78 - TSS region transcription start site region 34592
Sf3b4 3 96172506 to 96177564 5058 + protein coding gene splicing factor 3b, subunit 4
Tssr30691 3 96172507 to 96172530 23 + TSS region transcription start site region 30691
Tssr30692 3 96172534 to 96172564 30 + TSS region transcription start site region 30692
Tssr30693 3 96173982 to 96173996 14 + TSS region transcription start site region 30693
Gm22027 3 96176361 to 96176487 126 + snoRNA gene predicted gene, 22027
Cpgi13538 3 96181103 to 96181334 231 CpG island CpG island 13538
Tssr30694 3 96181156 to 96181167 11 + TSS region transcription start site region 30694
Tssr30695 3 96181178 to 96181233 55 + TSS region transcription start site region 30695
Sv2a 3 96181227 to 96195183 13956 + protein coding gene synaptic vesicle glycoprotein 2 a
Tssr30696 3 96184732 to 96184759 27 + TSS region transcription start site region 30696
Cpgi13539 3 96184990 to 96185518 528 CpG island CpG island 13539
Tssr30697 3 96195396 to 96195406 10 + TSS region transcription start site region 30697
Tssr30698 3 96195428 to 96195436 8 + TSS region transcription start site region 30698
Bola1 3 96196583 to 96198483 1900 - protein coding gene bolA-like 1 (E. coli)
Cpgi13540 3 96196668 to 96197747 1079 CpG island CpG island 13540
Tssr34593 3 96197580 to 96197634 54 - TSS region transcription start site region 34593
Tssr34594 3 96198460 to 96198484 24 - TSS region transcription start site region 34594
Gm15444 3 96209627 to 96220168 10541 - antisense lncRNA gene predicted gene 15444
Tssr34595 3 96209655 to 96209658 3 - TSS region transcription start site region 34595
Tssr30699 3 96219780 to 96219789 9 + TSS region transcription start site region 30699
Cpgi13541 3 96219780 to 96220496 716 CpG island CpG island 13541
Tssr30700 3 96219831 to 96219842 11 + TSS region transcription start site region 30700
Tssr30701 3 96219858 to 96219873 15 + TSS region transcription start site region 30701
Tssr30702 3 96219877 to 96219900 23 + TSS region transcription start site region 30702
Hist2h2ab 3 96219916 to 96220353 437 + protein coding gene histone cluster 2, H2ab
Tssr34596 3 96219937 to 96219946 9 - TSS region transcription start site region 34596
Hist2h2ac 3 96220413 to 96220880 467 - protein coding gene histone cluster 2, H2ac
Gm44492 3 96220501 to 96220641 140 + miRNA gene predicted gene, 44492
Tssr34597 3 96220881 to 96220899 18 - TSS region transcription start site region 34597
Tssr30703 3 96221111 to 96221134 23 + TSS region transcription start site region 30703
Hist2h2be 3 96221119 to 96223738 2619 + protein coding gene histone cluster 2, H2be
Tssr30704 3 96221156 to 96221167 11 + TSS region transcription start site region 30704
Cpgi13542 3 96221210 to 96221607 397 CpG island CpG island 13542
Cpgi13543 3 96238220 to 96238474 254 CpG island CpG island 13543
Hist2h3c2 3 96238479 to 96239127 648 - protein coding gene histone cluster 2, H3c2
Tssr34598 3 96238981 to 96238985 4 - TSS region transcription start site region 34598
Gm20632 3 96239393 to 96241819 2426 + antisense lncRNA gene predicted gene 20632
Hist2h2aa2 3 96239749 to 96240276 527 - protein coding gene histone cluster 2, H2aa2
Gm47311 3 96239868 to 96240005 137 + miRNA gene predicted gene, 47311
Cpgi13544 3 96240281 to 96240610 329 CpG island CpG island 13544
Tssr34599 3 96240317 to 96240338 21 - TSS region transcription start site region 34599
Gm20633 3 96243550 to 96246380 2830 - antisense lncRNA gene predicted gene 20633
Cpgi13545 3 96245071 to 96245547 476 CpG island CpG island 13545
Tssr34600 3 96245217 to 96245222 5 - TSS region transcription start site region 34600
Tssr34601 3 96245306 to 96245318 12 - TSS region transcription start site region 34601
Hist2h2aa1 3 96245497 to 96246052 555 + protein coding gene histone cluster 2, H2aa1
Tssr30705 3 96245530 to 96245546 16 + TSS region transcription start site region 30705
Gm20634 3 96245554 to 96248509 2955 + unclassified non-coding RNA gene predicted gene 20634
Gm47313 3 96245826 to 96245963 137 - miRNA gene predicted gene, 47313
Hist2h3c1 3 96246685 to 96247348 663 + protein coding gene histone cluster 2, H3c1
Tssr30706 3 96246836 to 96246850 14 + TSS region transcription start site region 30706
Tssr30707 3 96247830 to 96247874 44 + TSS region transcription start site region 30707
Gm20627 3 96254619 to 96256277 1658 - lncRNA gene predicted gene 20627
Tssr34602 3 96256244 to 96256255 11 - TSS region transcription start site region 34602
Tssr34603 3 96256261 to 96256268 7 - TSS region transcription start site region 34603
Tssr34604 3 96256271 to 96256307 36 - TSS region transcription start site region 34604
Tssr34605 3 96259727 to 96259738 11 - TSS region transcription start site region 34605
Tssr34606 3 96259751 to 96259764 13 - TSS region transcription start site region 34606
Tssr34607 3 96259774 to 96259789 15 - TSS region transcription start site region 34607
Tssr34608 3 96259791 to 96259796 5 - TSS region transcription start site region 34608
Tssr34609 3 96259809 to 96259815 6 - TSS region transcription start site region 34609
Tssr34610 3 96262316 to 96262327 11 - TSS region transcription start site region 34610
Tssr34611 3 96262329 to 96262349 20 - TSS region transcription start site region 34611
Tssr30708 3 96262437 to 96262467 30 + TSS region transcription start site region 30708