Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:9587479-9933679

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Zfp704	3	9427020 to 9610085	183065	-	protein coding gene	zinc finger protein 704
Cpgi12974	3	9608594 to 9610516	1922		CpG island	CpG island 12974
Tssr28346	3	9608803 to 9608824	21	+	TSS region	transcription start site region 28346
Tssr28347	3	9608826 to 9608841	15	+	TSS region	transcription start site region 28347
Tssr32578	3	9610033 to 9610040	7	-	TSS region	transcription start site region 32578
Tssr32579	3	9610074 to 9610086	12	-	TSS region	transcription start site region 32579
Tssr32580	3	9610090 to 9610124	34	-	TSS region	transcription start site region 32580
Tssr32581	3	9610233 to 9610247	14	-	TSS region	transcription start site region 32581
Tssr32582	3	9623519 to 9623528	9	-	TSS region	transcription start site region 32582
Cpgi12975	3	9629957 to 9630108	151		CpG island	CpG island 12975
Gm33169	3	9646323 to 9663118	16795	-	lncRNA gene	predicted gene, 33169
Gm17806	3	9656520 to 9656902	382	+	pseudogene	predicted gene, 17806
Tssr28348	3	9658352 to 9658359	7	+	TSS region	transcription start site region 28348
Tssr28349	3	9658371 to 9658378	7	+	TSS region	transcription start site region 28349
D3Mit202	3	9669772 to 9669910	138		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 202
Pag1	3	9687479 to 9833679	146200	-	protein coding gene	phosphoprotein associated with glycosphingolipid microdomains 1
Tssr32583	3	9705000 to 9705004	4	-	TSS region	transcription start site region 32583
Gm16337	3	9757607 to 9786142	28535	+	lincRNA gene	predicted gene 16337
Tssr32584	3	9761153 to 9761156	3	-	TSS region	transcription start site region 32584
Tssr32585	3	9778793 to 9778804	11	-	TSS region	transcription start site region 32585
Tssr32586	3	9786518 to 9786526	8	-	TSS region	transcription start site region 32586
Tssr32587	3	9799352 to 9799376	24	-	TSS region	transcription start site region 32587
Tssr32588	3	9801594 to 9801597	3	-	TSS region	transcription start site region 32588
Tssr815	3	9801763 to 9801797	34	-	TSS region	transcription start site region 815
Tssr28350	3	9801887 to 9801931	44	+	TSS region	transcription start site region 28350
Gm24786	3	9829620 to 9829728	108	-	rRNA gene	predicted gene, 24786
Cpgi12976	3	9832798 to 9834242	1444		CpG island	CpG island 12976
Tssr32589	3	9833596 to 9833611	15	-	TSS region	transcription start site region 32589
Tssr32590	3	9833617 to 9833638	21	-	TSS region	transcription start site region 32590
Tssr32591	3	9833653 to 9833668	15	-	TSS region	transcription start site region 32591
Tssr32592	3	9853122 to 9853134	12	-	TSS region	transcription start site region 32592
Tssr28351	3	9853227 to 9853238	11	+	TSS region	transcription start site region 28351
Tssr28352	3	9853248 to 9853282	34	+	TSS region	transcription start site region 28352
Tssr816	3	9853293 to 9853300	7	+	TSS region	transcription start site region 816
Tssr32593	3	9879487 to 9879528	41	-	TSS region	transcription start site region 32593
Gm33273	3	9880628 to 9885288	4660	-	lncRNA gene	predicted gene, 33273
Tssr32594	3	9884724 to 9884741	17	-	TSS region	transcription start site region 32594
Tssr32595	3	9886698 to 9886712	14	-	TSS region	transcription start site region 32595
Tssr32596	3	9886725 to 9886732	7	-	TSS region	transcription start site region 32596
Tssr28353	3	9886942 to 9886952	10	+	TSS region	transcription start site region 28353
Tssr28354	3	9886977 to 9886988	11	+	TSS region	transcription start site region 28354
Tssr817	3	9887460 to 9887466	6	+	TSS region	transcription start site region 817
Tssr818	3	9890838 to 9890880	42	-	TSS region	transcription start site region 818
Gm6236	3	9899433 to 9902377	2944	+	pseudogene	predicted gene 6236