Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95805420-95906120

51 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Rprd2	3	95760341 to 95818863	58522	-	protein coding gene	regulation of nuclear pre-mRNA domain containing 2
Gm17815	3	95804855 to 95805749	894	+	pseudogene	predicted gene, 17815
Cpgi13521	3	95818197 to 95820031	1834		CpG island	CpG island 13521
Tssr34543	3	95818747 to 95818801	54	-	TSS region	transcription start site region 34543
Tssr34544	3	95818821 to 95818877	56	-	TSS region	transcription start site region 34544
Tssr34545	3	95818895 to 95818907	12	-	TSS region	transcription start site region 34545
Tssr34546	3	95818941 to 95818990	49	-	TSS region	transcription start site region 34546
Gm29948	3	95819047 to 95821901	2854	+	lncRNA gene	predicted gene, 29948
Tssr34547	3	95819058 to 95819075	17	-	TSS region	transcription start site region 34547
Tssr34548	3	95819211 to 95819247	36	-	TSS region	transcription start site region 34548
Tssr30646	3	95819319 to 95819322	3	+	TSS region	transcription start site region 30646
Tssr34549	3	95819346 to 95819380	34	-	TSS region	transcription start site region 34549
Prpf3	3	95830124 to 95855885	25761	-	protein coding gene	pre-mRNA processing factor 3
Cpgi13522	3	95855420 to 95856120	700		CpG island	CpG island 13522
Tssr34550	3	95855777 to 95855822	45	-	TSS region	transcription start site region 34550
Tssr34551	3	95855860 to 95855889	29	-	TSS region	transcription start site region 34551
Gm26594	3	95855966 to 95861485	5519	+	lincRNA gene	predicted gene, 26594
Mrps21	3	95862634 to 95871519	8885	-	protein coding gene	mitochondrial ribosomal protein S21
Cpgi13523	3	95865601 to 95865896	295		CpG island	CpG island 13523
Cpgi13524	3	95871300 to 95871770	470		CpG island	CpG island 13524
Tssr34552	3	95871470 to 95871511	41	-	TSS region	transcription start site region 34552
Tssr30647	3	95871519 to 95871580	61	+	TSS region	transcription start site region 30647
C920021L13Rik	3	95871522 to 95889093	17571	+	antisense lncRNA gene	RIKEN cDNA C920021L13 gene
Tssr30648	3	95871585 to 95871635	50	+	TSS region	transcription start site region 30648
Tssr30649	3	95877053 to 95877059	6	+	TSS region	transcription start site region 30649
Ciart	3	95878500 to 95882242	3742	-	protein coding gene	circadian associated repressor of transcription
Cpgi13525	3	95881857 to 95882994	1137		CpG island	CpG island 13525
Tssr34553	3	95882031 to 95882047	16	-	TSS region	transcription start site region 34553
Tssr34554	3	95882181 to 95882190	9	-	TSS region	transcription start site region 34554
Tssr34555	3	95882193 to 95882231	38	-	TSS region	transcription start site region 34555
Tssr34556	3	95882232 to 95882244	12	-	TSS region	transcription start site region 34556
Tssr30650	3	95882570 to 95882575	5	+	TSS region	transcription start site region 30650
Tssr30651	3	95882727 to 95882740	13	+	TSS region	transcription start site region 30651
Tssr30652	3	95882753 to 95882777	24	+	TSS region	transcription start site region 30652
BC028528	3	95883954 to 95892005	8051	-	protein coding gene	cDNA sequence BC028528
Tssr34557	3	95891929 to 95891936	7	-	TSS region	transcription start site region 34557
Tssr34558	3	95891938 to 95891985	47	-	TSS region	transcription start site region 34558
Tssr34559	3	95892828 to 95892845	17	-	TSS region	transcription start site region 34559
Tssr34560	3	95892866 to 95892877	11	-	TSS region	transcription start site region 34560
Cpgi13526	3	95893701 to 95893997	296		CpG island	CpG island 13526
Tssr30653	3	95893920 to 95893933	13	+	TSS region	transcription start site region 30653
Tssr30654	3	95893953 to 95893974	21	+	TSS region	transcription start site region 30654
Aph1a	3	95893969 to 95898288	4319	+	protein coding gene	aph1 homolog A, gamma secretase subunit
Tssr30655	3	95894013 to 95894031	18	+	TSS region	transcription start site region 30655
Cpgi13527	3	95894269 to 95894489	220		CpG island	CpG island 13527
Car14	3	95897768 to 95904691	6923	-	protein coding gene	carbonic anhydrase 14
Tssr34561	3	95899491 to 95899529	38	-	TSS region	transcription start site region 34561
Tssr34562	3	95904631 to 95904646	15	-	TSS region	transcription start site region 34562
Cpgi13528	3	95904668 to 95904860	192		CpG island	CpG island 13528
Tssr34563	3	95904683 to 95904692	9	-	TSS region	transcription start site region 34563
Tssr34564	3	95904698 to 95904710	12	-	TSS region	transcription start site region 34564