Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95749211-95889247

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tars2	3	95739974 to 95754977	15003	-	protein coding gene	threonyl-tRNA synthetase 2, mitochondrial (putative)
Cpgi13520	3	95754626 to 95754984	358		CpG island	CpG island 13520
Tssr34539	3	95754796 to 95754803	7	-	TSS region	transcription start site region 34539
Tssr34540	3	95754824 to 95754831	7	-	TSS region	transcription start site region 34540
Tssr34541	3	95754841 to 95754887	46	-	TSS region	transcription start site region 34541
Rprd2	3	95760341 to 95818863	58522	-	protein coding gene	regulation of nuclear pre-mRNA domain containing 2
Tssr34542	3	95761881 to 95761886	5	-	TSS region	transcription start site region 34542
Gm43436	3	95780724 to 95780870	146	+	pseudogene	predicted gene 43436
Gm26361	3	95796699 to 95796884	185	-	snRNA gene	predicted gene, 26361
Gm17815	3	95804855 to 95805749	894	+	pseudogene	predicted gene, 17815
Cpgi13521	3	95818197 to 95820031	1834		CpG island	CpG island 13521
Tssr34543	3	95818747 to 95818801	54	-	TSS region	transcription start site region 34543
Tssr34544	3	95818821 to 95818877	56	-	TSS region	transcription start site region 34544
Tssr34545	3	95818895 to 95818907	12	-	TSS region	transcription start site region 34545
Tssr34546	3	95818941 to 95818990	49	-	TSS region	transcription start site region 34546
Gm29948	3	95819047 to 95821901	2854	+	lncRNA gene	predicted gene, 29948
Tssr34547	3	95819058 to 95819075	17	-	TSS region	transcription start site region 34547
Tssr34548	3	95819211 to 95819247	36	-	TSS region	transcription start site region 34548
Tssr30646	3	95819319 to 95819322	3	+	TSS region	transcription start site region 30646
Tssr34549	3	95819346 to 95819380	34	-	TSS region	transcription start site region 34549
Prpf3	3	95830124 to 95855885	25761	-	protein coding gene	pre-mRNA processing factor 3
Cpgi13522	3	95855420 to 95856120	700		CpG island	CpG island 13522
Tssr34550	3	95855777 to 95855822	45	-	TSS region	transcription start site region 34550
Tssr34551	3	95855860 to 95855889	29	-	TSS region	transcription start site region 34551
Gm26594	3	95855966 to 95861485	5519	+	lincRNA gene	predicted gene, 26594
Mrps21	3	95862634 to 95871519	8885	-	protein coding gene	mitochondrial ribosomal protein S21
Cpgi13523	3	95865601 to 95865896	295		CpG island	CpG island 13523
Cpgi13524	3	95871300 to 95871770	470		CpG island	CpG island 13524
Tssr34552	3	95871470 to 95871511	41	-	TSS region	transcription start site region 34552
Tssr30647	3	95871519 to 95871580	61	+	TSS region	transcription start site region 30647
C920021L13Rik	3	95871522 to 95889093	17571	+	antisense lncRNA gene	RIKEN cDNA C920021L13 gene
Tssr30648	3	95871585 to 95871635	50	+	TSS region	transcription start site region 30648
Tssr30649	3	95877053 to 95877059	6	+	TSS region	transcription start site region 30649
Ciart	3	95878500 to 95882242	3742	-	protein coding gene	circadian associated repressor of transcription
Cpgi13525	3	95881857 to 95882994	1137		CpG island	CpG island 13525
Tssr34553	3	95882031 to 95882047	16	-	TSS region	transcription start site region 34553
Tssr34554	3	95882181 to 95882190	9	-	TSS region	transcription start site region 34554
Tssr34555	3	95882193 to 95882231	38	-	TSS region	transcription start site region 34555
Tssr34556	3	95882232 to 95882244	12	-	TSS region	transcription start site region 34556
Tssr30650	3	95882570 to 95882575	5	+	TSS region	transcription start site region 30650
Tssr30651	3	95882727 to 95882740	13	+	TSS region	transcription start site region 30651
Tssr30652	3	95882753 to 95882777	24	+	TSS region	transcription start site region 30652
BC028528	3	95883954 to 95892005	8051	-	protein coding gene	cDNA sequence BC028528