Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95737004-96596718

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366 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ecm1 3 95734147 to 95739569 5422 - protein coding gene extracellular matrix protein 1
Tssr34531 3 95737048 to 95737061 13 - TSS region transcription start site region 34531
Tssr34532 3 95737656 to 95737681 25 - TSS region transcription start site region 34532
Tssr34533 3 95737682 to 95737699 17 - TSS region transcription start site region 34533
Tssr34534 3 95737831 to 95737871 40 - TSS region transcription start site region 34534
Tssr34535 3 95737874 to 95737891 17 - TSS region transcription start site region 34535
Tssr34536 3 95738088 to 95738117 29 - TSS region transcription start site region 34536
Tssr34537 3 95738260 to 95738308 48 - TSS region transcription start site region 34537
Tssr34538 3 95739554 to 95739576 22 - TSS region transcription start site region 34538
Tars2 3 95739974 to 95754977 15003 - protein coding gene threonyl-tRNA synthetase 2, mitochondrial (putative)
Cpgi13520 3 95754626 to 95754984 358 CpG island CpG island 13520
Tssr34539 3 95754796 to 95754803 7 - TSS region transcription start site region 34539
Tssr34540 3 95754824 to 95754831 7 - TSS region transcription start site region 34540
Tssr34541 3 95754841 to 95754887 46 - TSS region transcription start site region 34541
Rprd2 3 95760341 to 95818863 58522 - protein coding gene regulation of nuclear pre-mRNA domain containing 2
Tssr34542 3 95761881 to 95761886 5 - TSS region transcription start site region 34542
Gm43436 3 95780724 to 95780870 146 + pseudogene predicted gene 43436
Gm26361 3 95796699 to 95796884 185 - snRNA gene predicted gene, 26361
Gm17815 3 95804855 to 95805749 894 + pseudogene predicted gene, 17815
Cpgi13521 3 95818197 to 95820031 1834 CpG island CpG island 13521
Tssr34543 3 95818747 to 95818801 54 - TSS region transcription start site region 34543
Tssr34544 3 95818821 to 95818877 56 - TSS region transcription start site region 34544
Tssr34545 3 95818895 to 95818907 12 - TSS region transcription start site region 34545
Tssr34546 3 95818941 to 95818990 49 - TSS region transcription start site region 34546
Gm29948 3 95819047 to 95821901 2854 + lncRNA gene predicted gene, 29948
Tssr34547 3 95819058 to 95819075 17 - TSS region transcription start site region 34547
Tssr34548 3 95819211 to 95819247 36 - TSS region transcription start site region 34548
Tssr30646 3 95819319 to 95819322 3 + TSS region transcription start site region 30646
Tssr34549 3 95819346 to 95819380 34 - TSS region transcription start site region 34549
Prpf3 3 95830124 to 95855885 25761 - protein coding gene pre-mRNA processing factor 3
Cpgi13522 3 95855420 to 95856120 700 CpG island CpG island 13522
Tssr34550 3 95855777 to 95855822 45 - TSS region transcription start site region 34550
Tssr34551 3 95855860 to 95855889 29 - TSS region transcription start site region 34551
Gm26594 3 95855966 to 95861485 5519 + lincRNA gene predicted gene, 26594
Mrps21 3 95862634 to 95871519 8885 - protein coding gene mitochondrial ribosomal protein S21
Cpgi13523 3 95865601 to 95865896 295 CpG island CpG island 13523
Cpgi13524 3 95871300 to 95871770 470 CpG island CpG island 13524
Tssr34552 3 95871470 to 95871511 41 - TSS region transcription start site region 34552
Tssr30647 3 95871519 to 95871580 61 + TSS region transcription start site region 30647
C920021L13Rik 3 95871522 to 95889093 17571 + antisense lncRNA gene RIKEN cDNA C920021L13 gene
Tssr30648 3 95871585 to 95871635 50 + TSS region transcription start site region 30648
Tssr30649 3 95877053 to 95877059 6 + TSS region transcription start site region 30649
Ciart 3 95878500 to 95882242 3742 - protein coding gene circadian associated repressor of transcription
Cpgi13525 3 95881857 to 95882994 1137 CpG island CpG island 13525
Tssr34553 3 95882031 to 95882047 16 - TSS region transcription start site region 34553
Tssr34554 3 95882181 to 95882190 9 - TSS region transcription start site region 34554
Tssr34555 3 95882193 to 95882231 38 - TSS region transcription start site region 34555
Tssr34556 3 95882232 to 95882244 12 - TSS region transcription start site region 34556
Tssr30650 3 95882570 to 95882575 5 + TSS region transcription start site region 30650
Tssr30651 3 95882727 to 95882740 13 + TSS region transcription start site region 30651
Tssr30652 3 95882753 to 95882777 24 + TSS region transcription start site region 30652
BC028528 3 95883954 to 95892005 8051 - protein coding gene cDNA sequence BC028528
Tssr34557 3 95891929 to 95891936 7 - TSS region transcription start site region 34557
Tssr34558 3 95891938 to 95891985 47 - TSS region transcription start site region 34558
Tssr34559 3 95892828 to 95892845 17 - TSS region transcription start site region 34559
Tssr34560 3 95892866 to 95892877 11 - TSS region transcription start site region 34560
Cpgi13526 3 95893701 to 95893997 296 CpG island CpG island 13526
Tssr30653 3 95893920 to 95893933 13 + TSS region transcription start site region 30653
Tssr30654 3 95893953 to 95893974 21 + TSS region transcription start site region 30654
Aph1a 3 95893969 to 95898288 4319 + protein coding gene aph1 homolog A, gamma secretase subunit
Tssr30655 3 95894013 to 95894031 18 + TSS region transcription start site region 30655
Cpgi13527 3 95894269 to 95894489 220 CpG island CpG island 13527
Car14 3 95897768 to 95904691 6923 - protein coding gene carbonic anhydrase 14
Tssr34561 3 95899491 to 95899529 38 - TSS region transcription start site region 34561
Tssr34562 3 95904631 to 95904646 15 - TSS region transcription start site region 34562
Cpgi13528 3 95904668 to 95904860 192 CpG island CpG island 13528
Tssr34563 3 95904683 to 95904692 9 - TSS region transcription start site region 34563
Tssr34564 3 95904698 to 95904710 12 - TSS region transcription start site region 34564
Tssr34565 3 95925195 to 95925200 5 - TSS region transcription start site region 34565
Gm46815 3 95925875 to 95929025 3150 - lncRNA gene predicted gene, 46815
Cpgi13529 3 95928711 to 95930738 2027 CpG island CpG island 13529
Tssr34566 3 95928823 to 95928834 11 - TSS region transcription start site region 34566
Tssr34567 3 95928870 to 95928889 19 - TSS region transcription start site region 34567
Tssr34568 3 95929009 to 95929057 48 - TSS region transcription start site region 34568
Anp32e 3 95929245 to 95947387 18142 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
Tssr30656 3 95929279 to 95929298 19 + TSS region transcription start site region 30656
Tssr30657 3 95929332 to 95929343 11 + TSS region transcription start site region 30657
Tssr30658 3 95929429 to 95929432 3 + TSS region transcription start site region 30658
Tssr34569 3 95929598 to 95929624 26 - TSS region transcription start site region 34569
Tssr30659 3 95933998 to 95934022 24 + TSS region transcription start site region 30659
Tssr30660 3 95934801 to 95934836 35 + TSS region transcription start site region 30660
Tssr30661 3 95937143 to 95937157 14 + TSS region transcription start site region 30661
Tssr30662 3 95937903 to 95937920 17 + TSS region transcription start site region 30662
Gm43375 3 95940086 to 95942565 2479 + unclassified gene predicted gene 43375
Cpgi13530 3 95950700 to 95951490 790 CpG island CpG island 13530
Tssr34570 3 95951017 to 95951036 19 - TSS region transcription start site region 34570
Tssr30663 3 95951058 to 95951086 28 + TSS region transcription start site region 30663
Tssr30664 3 95951307 to 95951367 60 + TSS region transcription start site region 30664
Gm20940 3 95964029 to 95964388 359 - pseudogene predicted gene, 20940
Tssr30665 3 95972457 to 95972479 22 + TSS region transcription start site region 30665
Cpgi13531 3 95973250 to 95973402 152 CpG island CpG island 13531
Tssr34571 3 95977117 to 95977167 50 - TSS region transcription start site region 34571
Tssr30666 3 95977410 to 95977442 32 + TSS region transcription start site region 30666
Tssr30667 3 95982385 to 95982402 17 + TSS region transcription start site region 30667
Tssr30668 3 95982408 to 95982438 30 + TSS region transcription start site region 30668
Tssr30669 3 95982809 to 95982815 6 + TSS region transcription start site region 30669
Gm4097 3 95982810 to 95983604 794 + pseudogene predicted gene 4097
Tssr30670 3 95985490 to 95985523 33 + TSS region transcription start site region 30670
Gm9054 3 95985510 to 95986967 1457 + lncRNA gene predicted gene 9054
Cpgi13532 3 95986384 to 95986577 193 CpG island CpG island 13532
Plekho1 3 95988809 to 95995863 7054 - protein coding gene pleckstrin homology domain containing, family O member 1
Tssr34572 3 95989294 to 95989306 12 - TSS region transcription start site region 34572
Tssr30671 3 95989348 to 95989371 23 + TSS region transcription start site region 30671
Tssr34573 3 95989396 to 95989414 18 - TSS region transcription start site region 34573
Tssr34574 3 95990846 to 95990857 11 - TSS region transcription start site region 34574
Tssr34575 3 95990863 to 95990894 31 - TSS region transcription start site region 34575
Tssr34576 3 95993653 to 95993678 25 - TSS region transcription start site region 34576
Tssr34577 3 95993702 to 95993719 17 - TSS region transcription start site region 34577
Tssr30672 3 95994031 to 95994042 11 + TSS region transcription start site region 30672
Tssr30673 3 95994096 to 95994122 26 + TSS region transcription start site region 30673
Cpgi13533 3 95995138 to 95996509 1371 CpG island CpG island 13533
Tssr34578 3 95995640 to 95995659 19 - TSS region transcription start site region 34578
Tssr34579 3 95995662 to 95995692 30 - TSS region transcription start site region 34579
Tssr34580 3 95995698 to 95995722 24 - TSS region transcription start site region 34580
Tssr34581 3 95995791 to 95995802 11 - TSS region transcription start site region 34581
Tssr34582 3 95995810 to 95995821 11 - TSS region transcription start site region 34582
Tssr34583 3 95995835 to 95995857 22 - TSS region transcription start site region 34583
Gm9052 3 95995918 to 95996536 618 unclassified gene predicted gene 9052
Tssr34584 3 95995936 to 95995955 19 - TSS region transcription start site region 34584
Tssr30674 3 95995985 to 95996004 19 + TSS region transcription start site region 30674
Tssr34585 3 95995999 to 95996010 11 - TSS region transcription start site region 34585
Tssr30675 3 95996106 to 95996126 20 + TSS region transcription start site region 30675
Tssr30676 3 95996145 to 95996160 15 + TSS region transcription start site region 30676
Tssr34586 3 95997312 to 95997333 21 - TSS region transcription start site region 34586
Vps45 3 95999832 to 96058455 58623 - protein coding gene vacuolar protein sorting 45
Tssr34587 3 96016863 to 96016873 10 - TSS region transcription start site region 34587
Tssr34588 3 96034245 to 96034252 7 - TSS region transcription start site region 34588
D3Umi26 3 96042884 to 96043289 405 DNA segment DNA segment, Chr 3, University of Michigan 26
Cpgi13534 3 96057754 to 96058192 438 CpG island CpG island 13534
Tssr34589 3 96057823 to 96057874 51 - TSS region transcription start site region 34589
Tssr34590 3 96058446 to 96058459 13 - TSS region transcription start site region 34590
Tssr30677 3 96086690 to 96086735 45 + TSS region transcription start site region 30677
Gm43554 3 96086871 to 96087056 185 + pseudogene predicted gene 43554
Tssr34591 3 96094297 to 96094332 35 - TSS region transcription start site region 34591
Gm30044 3 96098167 to 96104358 6191 - lncRNA gene predicted gene, 30044
Cpgi13535 3 96104178 to 96105107 929 CpG island CpG island 13535
Tssr30678 3 96104478 to 96104489 11 + TSS region transcription start site region 30678
Tssr30679 3 96104498 to 96104571 73 + TSS region transcription start site region 30679
Otud7b 3 96104527 to 96161129 56602 + protein coding gene OTU domain containing 7B
Tssr30680 3 96104816 to 96104827 11 + TSS region transcription start site region 30680
Tssr30681 3 96108521 to 96108531 10 + TSS region transcription start site region 30681
Tssr30682 3 96108534 to 96108566 32 + TSS region transcription start site region 30682
Tssr30683 3 96108569 to 96108586 17 + TSS region transcription start site region 30683
Tssr30684 3 96108588 to 96108612 24 + TSS region transcription start site region 30684
Cpgi13536 3 96161344 to 96161533 189 CpG island CpG island 13536
Tssr30685 3 96161956 to 96161977 21 + TSS region transcription start site region 30685
Tssr30686 3 96161981 to 96162023 42 + TSS region transcription start site region 30686
Mtmr11 3 96162004 to 96171718 9714 + protein coding gene myotubularin related protein 11
Tssr30687 3 96162049 to 96162063 14 + TSS region transcription start site region 30687
Tssr30688 3 96162447 to 96162477 30 + TSS region transcription start site region 30688
Gm17690 3 96167464 to 96172416 4952 - antisense lncRNA gene predicted gene, 17690
Cpgi13537 3 96172026 to 96173183 1157 CpG island CpG island 13537
Tssr30689 3 96172327 to 96172338 11 + TSS region transcription start site region 30689
Tssr30690 3 96172352 to 96172368 16 + TSS region transcription start site region 30690
Tssr34592 3 96172384 to 96172462 78 - TSS region transcription start site region 34592
Sf3b4 3 96172506 to 96177564 5058 + protein coding gene splicing factor 3b, subunit 4
Tssr30691 3 96172507 to 96172530 23 + TSS region transcription start site region 30691
Tssr30692 3 96172534 to 96172564 30 + TSS region transcription start site region 30692
Tssr30693 3 96173982 to 96173996 14 + TSS region transcription start site region 30693
Gm22027 3 96176361 to 96176487 126 + snoRNA gene predicted gene, 22027
Cpgi13538 3 96181103 to 96181334 231 CpG island CpG island 13538
Tssr30694 3 96181156 to 96181167 11 + TSS region transcription start site region 30694
Tssr30695 3 96181178 to 96181233 55 + TSS region transcription start site region 30695
Sv2a 3 96181227 to 96195183 13956 + protein coding gene synaptic vesicle glycoprotein 2 a
Tssr30696 3 96184732 to 96184759 27 + TSS region transcription start site region 30696
Cpgi13539 3 96184990 to 96185518 528 CpG island CpG island 13539
Tssr30697 3 96195396 to 96195406 10 + TSS region transcription start site region 30697
Tssr30698 3 96195428 to 96195436 8 + TSS region transcription start site region 30698
Bola1 3 96196583 to 96198483 1900 - protein coding gene bolA-like 1 (E. coli)
Cpgi13540 3 96196668 to 96197747 1079 CpG island CpG island 13540
Tssr34593 3 96197580 to 96197634 54 - TSS region transcription start site region 34593
Tssr34594 3 96198460 to 96198484 24 - TSS region transcription start site region 34594
Gm15444 3 96209627 to 96220168 10541 - antisense lncRNA gene predicted gene 15444
Tssr34595 3 96209655 to 96209658 3 - TSS region transcription start site region 34595
Tssr30699 3 96219780 to 96219789 9 + TSS region transcription start site region 30699
Cpgi13541 3 96219780 to 96220496 716 CpG island CpG island 13541
Tssr30700 3 96219831 to 96219842 11 + TSS region transcription start site region 30700
Tssr30701 3 96219858 to 96219873 15 + TSS region transcription start site region 30701
Tssr30702 3 96219877 to 96219900 23 + TSS region transcription start site region 30702
Hist2h2ab 3 96219916 to 96220353 437 + protein coding gene histone cluster 2, H2ab
Tssr34596 3 96219937 to 96219946 9 - TSS region transcription start site region 34596
Hist2h2ac 3 96220413 to 96220880 467 - protein coding gene histone cluster 2, H2ac
Gm44492 3 96220501 to 96220641 140 + miRNA gene predicted gene, 44492
Tssr34597 3 96220881 to 96220899 18 - TSS region transcription start site region 34597
Tssr30703 3 96221111 to 96221134 23 + TSS region transcription start site region 30703
Hist2h2be 3 96221119 to 96223738 2619 + protein coding gene histone cluster 2, H2be
Tssr30704 3 96221156 to 96221167 11 + TSS region transcription start site region 30704
Cpgi13542 3 96221210 to 96221607 397 CpG island CpG island 13542
Cpgi13543 3 96238220 to 96238474 254 CpG island CpG island 13543
Hist2h3c2 3 96238479 to 96239127 648 - protein coding gene histone cluster 2, H3c2
Tssr34598 3 96238981 to 96238985 4 - TSS region transcription start site region 34598
Gm20632 3 96239393 to 96241819 2426 + antisense lncRNA gene predicted gene 20632
Hist2h2aa2 3 96239749 to 96240276 527 - protein coding gene histone cluster 2, H2aa2
Gm47311 3 96239868 to 96240005 137 + miRNA gene predicted gene, 47311
Cpgi13544 3 96240281 to 96240610 329 CpG island CpG island 13544
Tssr34599 3 96240317 to 96240338 21 - TSS region transcription start site region 34599
Gm20633 3 96243550 to 96246380 2830 - antisense lncRNA gene predicted gene 20633
Cpgi13545 3 96245071 to 96245547 476 CpG island CpG island 13545
Tssr34600 3 96245217 to 96245222 5 - TSS region transcription start site region 34600
Tssr34601 3 96245306 to 96245318 12 - TSS region transcription start site region 34601