Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95677634-96056514

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adamtsl4 3 95676201 to 95687917 11716 - protein coding gene ADAMTS-like 4
Tssr34516 3 95681457 to 95681498 41 - TSS region transcription start site region 34516
Tssr34517 3 95684525 to 95684556 31 - TSS region transcription start site region 34517
Tssr34518 3 95685589 to 95685607 18 - TSS region transcription start site region 34518
Cpgi13518 3 95687511 to 95688256 745 CpG island CpG island 13518
Tssr34519 3 95687846 to 95687895 49 - TSS region transcription start site region 34519
D3Umi13 3 95701987 to 95702288 301 DNA segment DNA segment, Chr 3, University of Michigan 13
Tssr34520 3 95702003 to 95702034 31 - TSS region transcription start site region 34520
D3Umi14 3 95707581 to 95707988 407 DNA segment DNA segment, Chr 3, University of Michigan 14
Tssr34521 3 95710696 to 95710699 3 - TSS region transcription start site region 34521
D3Umi15 3 95711627 to 95712399 772 DNA segment DNA segment, Chr 3, University of Michigan 15
D3Umi16 3 95714368 to 95714863 495 DNA segment DNA segment, Chr 3, University of Michigan 16
D3Umi17 3 95715201 to 95715661 460 DNA segment DNA segment, Chr 3, University of Michigan 17
D3Umi18 3 95716342 to 95717133 791 DNA segment DNA segment, Chr 3, University of Michigan 18
D3Umi19 3 95716935 to 95718035 1100 DNA segment DNA segment, Chr 3, University of Michigan 19
D3Umi20 3 95717854 to 95718932 1078 DNA segment DNA segment, Chr 3, University of Michigan 20
D3Umi21 3 95718743 to 95719724 981 DNA segment DNA segment, Chr 3, University of Michigan 21
Tssr972 3 95719153 to 95719160 7 + TSS region transcription start site region 972
D3Umi22 3 95721222 to 95722311 1089 DNA segment DNA segment, Chr 3, University of Michigan 22
D3Umi23 3 95724043 to 95725118 1075 DNA segment DNA segment, Chr 3, University of Michigan 23
D3Umi24 3 95726149 to 95726690 541 DNA segment DNA segment, Chr 3, University of Michigan 24
Ecm1 3 95734147 to 95739569 5422 - protein coding gene extracellular matrix protein 1
D3Umi25 3 95734713 to 95735027 314 DNA segment DNA segment, Chr 3, University of Michigan 25
Mir7014 3 95734911 to 95734973 62 - miRNA gene microRNA 7014
Tssr34522 3 95735312 to 95735324 12 - TSS region transcription start site region 34522
Cpgi13519 3 95735813 to 95735971 158 CpG island CpG island 13519
Tssr34523 3 95735872 to 95735885 13 - TSS region transcription start site region 34523
Tssr30643 3 95735907 to 95735938 31 + TSS region transcription start site region 30643
Tssr34524 3 95735973 to 95735985 12 - TSS region transcription start site region 34524
Tssr34525 3 95736020 to 95736052 32 - TSS region transcription start site region 34525
Tssr34526 3 95736080 to 95736121 41 - TSS region transcription start site region 34526
Tssr30644 3 95736120 to 95736143 23 + TSS region transcription start site region 30644
Tssr30645 3 95736170 to 95736182 12 + TSS region transcription start site region 30645
Tssr34527 3 95736181 to 95736194 13 - TSS region transcription start site region 34527
Tssr34528 3 95736546 to 95736565 19 - TSS region transcription start site region 34528
Tssr34529 3 95736596 to 95736650 54 - TSS region transcription start site region 34529
Tssr34530 3 95736685 to 95736719 34 - TSS region transcription start site region 34530
Tssr34531 3 95737048 to 95737061 13 - TSS region transcription start site region 34531
Tssr34532 3 95737656 to 95737681 25 - TSS region transcription start site region 34532
Tssr34533 3 95737682 to 95737699 17 - TSS region transcription start site region 34533
Tssr34534 3 95737831 to 95737871 40 - TSS region transcription start site region 34534
Tssr34535 3 95737874 to 95737891 17 - TSS region transcription start site region 34535
Tssr34536 3 95738088 to 95738117 29 - TSS region transcription start site region 34536
Tssr34537 3 95738260 to 95738308 48 - TSS region transcription start site region 34537
Tssr34538 3 95739554 to 95739576 22 - TSS region transcription start site region 34538
Tars2 3 95739974 to 95754977 15003 - protein coding gene threonyl-tRNA synthetase 2, mitochondrial (putative)
Cpgi13520 3 95754626 to 95754984 358 CpG island CpG island 13520
Tssr34539 3 95754796 to 95754803 7 - TSS region transcription start site region 34539
Tssr34540 3 95754824 to 95754831 7 - TSS region transcription start site region 34540
Tssr34541 3 95754841 to 95754887 46 - TSS region transcription start site region 34541
Rprd2 3 95760341 to 95818863 58522 - protein coding gene regulation of nuclear pre-mRNA domain containing 2
Tssr34542 3 95761881 to 95761886 5 - TSS region transcription start site region 34542
Gm43436 3 95780724 to 95780870 146 + pseudogene predicted gene 43436
Gm26361 3 95796699 to 95796884 185 - snRNA gene predicted gene, 26361
Gm17815 3 95804855 to 95805749 894 + pseudogene predicted gene, 17815
Cpgi13521 3 95818197 to 95820031 1834 CpG island CpG island 13521
Tssr34543 3 95818747 to 95818801 54 - TSS region transcription start site region 34543
Tssr34544 3 95818821 to 95818877 56 - TSS region transcription start site region 34544
Tssr34545 3 95818895 to 95818907 12 - TSS region transcription start site region 34545
Tssr34546 3 95818941 to 95818990 49 - TSS region transcription start site region 34546
Gm29948 3 95819047 to 95821901 2854 + lncRNA gene predicted gene, 29948
Tssr34547 3 95819058 to 95819075 17 - TSS region transcription start site region 34547
Tssr34548 3 95819211 to 95819247 36 - TSS region transcription start site region 34548
Tssr30646 3 95819319 to 95819322 3 + TSS region transcription start site region 30646
Tssr34549 3 95819346 to 95819380 34 - TSS region transcription start site region 34549
Prpf3 3 95830124 to 95855885 25761 - protein coding gene pre-mRNA processing factor 3
Cpgi13522 3 95855420 to 95856120 700 CpG island CpG island 13522
Tssr34550 3 95855777 to 95855822 45 - TSS region transcription start site region 34550
Tssr34551 3 95855860 to 95855889 29 - TSS region transcription start site region 34551
Gm26594 3 95855966 to 95861485 5519 + lincRNA gene predicted gene, 26594
Mrps21 3 95862634 to 95871519 8885 - protein coding gene mitochondrial ribosomal protein S21
Cpgi13523 3 95865601 to 95865896 295 CpG island CpG island 13523
Cpgi13524 3 95871300 to 95871770 470 CpG island CpG island 13524
Tssr34552 3 95871470 to 95871511 41 - TSS region transcription start site region 34552
Tssr30647 3 95871519 to 95871580 61 + TSS region transcription start site region 30647
C920021L13Rik 3 95871522 to 95889093 17571 + antisense lncRNA gene RIKEN cDNA C920021L13 gene
Tssr30648 3 95871585 to 95871635 50 + TSS region transcription start site region 30648
Tssr30649 3 95877053 to 95877059 6 + TSS region transcription start site region 30649
Ciart 3 95878500 to 95882242 3742 - protein coding gene circadian associated repressor of transcription
Cpgi13525 3 95881857 to 95882994 1137 CpG island CpG island 13525
Tssr34553 3 95882031 to 95882047 16 - TSS region transcription start site region 34553
Tssr34554 3 95882181 to 95882190 9 - TSS region transcription start site region 34554
Tssr34555 3 95882193 to 95882231 38 - TSS region transcription start site region 34555
Tssr34556 3 95882232 to 95882244 12 - TSS region transcription start site region 34556
Tssr30650 3 95882570 to 95882575 5 + TSS region transcription start site region 30650
Tssr30651 3 95882727 to 95882740 13 + TSS region transcription start site region 30651
Tssr30652 3 95882753 to 95882777 24 + TSS region transcription start site region 30652
BC028528 3 95883954 to 95892005 8051 - protein coding gene cDNA sequence BC028528
Tssr34557 3 95891929 to 95891936 7 - TSS region transcription start site region 34557
Tssr34558 3 95891938 to 95891985 47 - TSS region transcription start site region 34558
Tssr34559 3 95892828 to 95892845 17 - TSS region transcription start site region 34559
Tssr34560 3 95892866 to 95892877 11 - TSS region transcription start site region 34560
Cpgi13526 3 95893701 to 95893997 296 CpG island CpG island 13526
Tssr30653 3 95893920 to 95893933 13 + TSS region transcription start site region 30653
Tssr30654 3 95893953 to 95893974 21 + TSS region transcription start site region 30654
Aph1a 3 95893969 to 95898288 4319 + protein coding gene aph1 homolog A, gamma secretase subunit
Tssr30655 3 95894013 to 95894031 18 + TSS region transcription start site region 30655
Cpgi13527 3 95894269 to 95894489 220 CpG island CpG island 13527
Car14 3 95897768 to 95904691 6923 - protein coding gene carbonic anhydrase 14
Tssr34561 3 95899491 to 95899529 38 - TSS region transcription start site region 34561
Tssr34562 3 95904631 to 95904646 15 - TSS region transcription start site region 34562
Cpgi13528 3 95904668 to 95904860 192 CpG island CpG island 13528
Tssr34563 3 95904683 to 95904692 9 - TSS region transcription start site region 34563
Tssr34564 3 95904698 to 95904710 12 - TSS region transcription start site region 34564
Tssr34565 3 95925195 to 95925200 5 - TSS region transcription start site region 34565
Gm46815 3 95925875 to 95929025 3150 - lncRNA gene predicted gene, 46815
Cpgi13529 3 95928711 to 95930738 2027 CpG island CpG island 13529
Tssr34566 3 95928823 to 95928834 11 - TSS region transcription start site region 34566
Tssr34567 3 95928870 to 95928889 19 - TSS region transcription start site region 34567
Tssr34568 3 95929009 to 95929057 48 - TSS region transcription start site region 34568
Anp32e 3 95929245 to 95947387 18142 + protein coding gene acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
Tssr30656 3 95929279 to 95929298 19 + TSS region transcription start site region 30656
Tssr30657 3 95929332 to 95929343 11 + TSS region transcription start site region 30657
Tssr30658 3 95929429 to 95929432 3 + TSS region transcription start site region 30658
Tssr34569 3 95929598 to 95929624 26 - TSS region transcription start site region 34569
Tssr30659 3 95933998 to 95934022 24 + TSS region transcription start site region 30659
Tssr30660 3 95934801 to 95934836 35 + TSS region transcription start site region 30660
Tssr30661 3 95937143 to 95937157 14 + TSS region transcription start site region 30661
Tssr30662 3 95937903 to 95937920 17 + TSS region transcription start site region 30662
Gm43375 3 95940086 to 95942565 2479 + unclassified gene predicted gene 43375
Cpgi13530 3 95950700 to 95951490 790 CpG island CpG island 13530
Tssr34570 3 95951017 to 95951036 19 - TSS region transcription start site region 34570
Tssr30663 3 95951058 to 95951086 28 + TSS region transcription start site region 30663
Tssr30664 3 95951307 to 95951367 60 + TSS region transcription start site region 30664
Gm20940 3 95964029 to 95964388 359 - pseudogene predicted gene, 20940
Tssr30665 3 95972457 to 95972479 22 + TSS region transcription start site region 30665
Cpgi13531 3 95973250 to 95973402 152 CpG island CpG island 13531
Tssr34571 3 95977117 to 95977167 50 - TSS region transcription start site region 34571
Tssr30666 3 95977410 to 95977442 32 + TSS region transcription start site region 30666
Tssr30667 3 95982385 to 95982402 17 + TSS region transcription start site region 30667
Tssr30668 3 95982408 to 95982438 30 + TSS region transcription start site region 30668
Tssr30669 3 95982809 to 95982815 6 + TSS region transcription start site region 30669
Gm4097 3 95982810 to 95983604 794 + pseudogene predicted gene 4097
Tssr30670 3 95985490 to 95985523 33 + TSS region transcription start site region 30670
Gm9054 3 95985510 to 95986967 1457 + lncRNA gene predicted gene 9054
Cpgi13532 3 95986384 to 95986577 193 CpG island CpG island 13532
Plekho1 3 95988809 to 95995863 7054 - protein coding gene pleckstrin homology domain containing, family O member 1
Tssr34572 3 95989294 to 95989306 12 - TSS region transcription start site region 34572
Tssr30671 3 95989348 to 95989371 23 + TSS region transcription start site region 30671
Tssr34573 3 95989396 to 95989414 18 - TSS region transcription start site region 34573
Tssr34574 3 95990846 to 95990857 11 - TSS region transcription start site region 34574
Tssr34575 3 95990863 to 95990894 31 - TSS region transcription start site region 34575
Tssr34576 3 95993653 to 95993678 25 - TSS region transcription start site region 34576
Tssr34577 3 95993702 to 95993719 17 - TSS region transcription start site region 34577
Tssr30672 3 95994031 to 95994042 11 + TSS region transcription start site region 30672
Tssr30673 3 95994096 to 95994122 26 + TSS region transcription start site region 30673
Cpgi13533 3 95995138 to 95996509 1371 CpG island CpG island 13533
Tssr34578 3 95995640 to 95995659 19 - TSS region transcription start site region 34578
Tssr34579 3 95995662 to 95995692 30 - TSS region transcription start site region 34579
Tssr34580 3 95995698 to 95995722 24 - TSS region transcription start site region 34580
Tssr34581 3 95995791 to 95995802 11 - TSS region transcription start site region 34581
Tssr34582 3 95995810 to 95995821 11 - TSS region transcription start site region 34582
Tssr34583 3 95995835 to 95995857 22 - TSS region transcription start site region 34583
Gm9052 3 95995918 to 95996536 618 unclassified gene predicted gene 9052
Tssr34584 3 95995936 to 95995955 19 - TSS region transcription start site region 34584
Tssr30674 3 95995985 to 95996004 19 + TSS region transcription start site region 30674
Tssr34585 3 95995999 to 95996010 11 - TSS region transcription start site region 34585
Tssr30675 3 95996106 to 95996126 20 + TSS region transcription start site region 30675
Tssr30676 3 95996145 to 95996160 15 + TSS region transcription start site region 30676
Tssr34586 3 95997312 to 95997333 21 - TSS region transcription start site region 34586
Vps45 3 95999832 to 96058455 58623 - protein coding gene vacuolar protein sorting 45
Tssr34587 3 96016863 to 96016873 10 - TSS region transcription start site region 34587
Tssr34588 3 96034245 to 96034252 7 - TSS region transcription start site region 34588
D3Umi26 3 96042884 to 96043289 405 DNA segment DNA segment, Chr 3, University of Michigan 26