Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95545446-97355611

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629 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctss 3 95526786 to 95556403 29617 + protein coding gene cathepsin S
Tssr34496 3 95545440 to 95545502 62 - TSS region transcription start site region 34496
Tssr30586 3 95545459 to 95545471 12 + TSS region transcription start site region 30586
Tssr30587 3 95545472 to 95545489 17 + TSS region transcription start site region 30587
Tssr30588 3 95545498 to 95545513 15 + TSS region transcription start site region 30588
Tssr30589 3 95545521 to 95545541 20 + TSS region transcription start site region 30589
Tssr34497 3 95545525 to 95545537 12 - TSS region transcription start site region 34497
Tssr30590 3 95546795 to 95546804 9 + TSS region transcription start site region 30590
Tssr30591 3 95547234 to 95547247 13 + TSS region transcription start site region 30591
Tssr30592 3 95550048 to 95550060 12 + TSS region transcription start site region 30592
Tssr30593 3 95550074 to 95550086 12 + TSS region transcription start site region 30593
Tssr970 3 95550091 to 95550097 6 + TSS region transcription start site region 970
Tssr30594 3 95550101 to 95550119 18 + TSS region transcription start site region 30594
Tssr34498 3 95550118 to 95550158 40 - TSS region transcription start site region 34498
Tssr30595 3 95550125 to 95550129 4 + TSS region transcription start site region 30595
Tssr30596 3 95554472 to 95554482 10 + TSS region transcription start site region 30596
Tssr30597 3 95556082 to 95556114 32 + TSS region transcription start site region 30597
Tssr30598 3 95556115 to 95556188 73 + TSS region transcription start site region 30598
Tssr34499 3 95556170 to 95556193 23 - TSS region transcription start site region 34499
Tssr30599 3 95556194 to 95556247 53 + TSS region transcription start site region 30599
Tssr30600 3 95556302 to 95556325 23 + TSS region transcription start site region 30600
Tssr30601 3 95556339 to 95556346 7 + TSS region transcription start site region 30601
Tssr34500 3 95556394 to 95556403 9 - TSS region transcription start site region 34500
Cpgi13514 3 95559426 to 95559946 520 CpG island CpG island 13514
Tssr30602 3 95559671 to 95559691 20 + TSS region transcription start site region 30602
Hormad1 3 95559677 to 95587671 27994 + protein coding gene HORMA domain containing 1
Gm40097 3 95585881 to 95588830 2949 - lncRNA gene predicted gene, 40097
Tssr30603 3 95588928 to 95588953 25 + TSS region transcription start site region 30603
Golph3l 3 95588934 to 95619247 30313 + protein coding gene golgi phosphoprotein 3-like
Tssr30604 3 95588960 to 95588988 28 + TSS region transcription start site region 30604
Gm42671 3 95588971 to 95590574 1603 + unclassified gene predicted gene 42671
Tssr30605 3 95588991 to 95589009 18 + TSS region transcription start site region 30605
Tssr30606 3 95589035 to 95589044 9 + TSS region transcription start site region 30606
Cpgi13515 3 95622226 to 95622529 303 CpG island CpG island 13515
Tssr30607 3 95622236 to 95622247 11 + TSS region transcription start site region 30607
Rps10-ps1 3 95622278 to 95622772 494 + pseudogene ribosomal protein S10, pseudogene 1
Tssr30608 3 95622636 to 95622668 32 + TSS region transcription start site region 30608
Tssr30609 3 95623892 to 95623900 8 + TSS region transcription start site region 30609
Tssr34501 3 95624722 to 95624749 27 - TSS region transcription start site region 34501
Cpgi13516 3 95624787 to 95625383 596 CpG island CpG island 13516
Tssr30610 3 95624971 to 95625021 50 + TSS region transcription start site region 30610
Ensa 3 95624993 to 95632102 7109 + protein coding gene endosulfine alpha
Tssr30611 3 95625484 to 95625497 13 + TSS region transcription start site region 30611
Tssr30612 3 95628631 to 95628651 20 + TSS region transcription start site region 30612
E330034L11Rik 3 95639304 to 95641045 1741 + unclassified gene RIKEN cDNA E330034L11 gene
Tssr30613 3 95645592 to 95645603 11 + TSS region transcription start site region 30613
Tssr30614 3 95645654 to 95645663 9 + TSS region transcription start site region 30614
Tssr34502 3 95650506 to 95650526 20 - TSS region transcription start site region 34502
Tssr30615 3 95650864 to 95650887 23 + TSS region transcription start site region 30615
Tssr30616 3 95650889 to 95650906 17 + TSS region transcription start site region 30616
Tssr30617 3 95650918 to 95650937 19 + TSS region transcription start site region 30617
Tssr34503 3 95651337 to 95651341 4 - TSS region transcription start site region 34503
Tssr30618 3 95651473 to 95651511 38 + TSS region transcription start site region 30618
Tssr30619 3 95651760 to 95651799 39 + TSS region transcription start site region 30619
Tssr34504 3 95652010 to 95652014 4 - TSS region transcription start site region 34504
Tssr34505 3 95652394 to 95652409 15 - TSS region transcription start site region 34505
Tssr34506 3 95653718 to 95653725 7 - TSS region transcription start site region 34506
Tssr30620 3 95653750 to 95653763 13 + TSS region transcription start site region 30620
Tssr971 3 95653775 to 95653797 22 - TSS region transcription start site region 971
Tssr30621 3 95653896 to 95653907 11 + TSS region transcription start site region 30621
Tssr30622 3 95653917 to 95653924 7 + TSS region transcription start site region 30622
Tssr30623 3 95653930 to 95653933 3 + TSS region transcription start site region 30623
Tssr30624 3 95656173 to 95656178 5 + TSS region transcription start site region 30624
Cpgi13517 3 95658347 to 95659758 1411 CpG island CpG island 13517
Tssr34507 3 95658544 to 95658554 10 - TSS region transcription start site region 34507
Tssr34508 3 95658561 to 95658588 27 - TSS region transcription start site region 34508
Tssr34509 3 95658606 to 95658625 19 - TSS region transcription start site region 34509
Tssr34510 3 95658630 to 95658660 30 - TSS region transcription start site region 34510
Tssr30625 3 95658714 to 95658723 9 + TSS region transcription start site region 30625
Tssr30626 3 95658738 to 95658749 11 + TSS region transcription start site region 30626
Tssr30627 3 95658771 to 95658787 16 + TSS region transcription start site region 30627
Mcl1 3 95658788 to 95663176 4388 + protein coding gene myeloid cell leukemia sequence 1
Tssr30628 3 95659050 to 95659082 32 + TSS region transcription start site region 30628
Tssr30629 3 95659098 to 95659129 31 + TSS region transcription start site region 30629
Tssr30630 3 95659260 to 95659280 20 + TSS region transcription start site region 30630
Tssr30631 3 95659302 to 95659320 18 + TSS region transcription start site region 30631
Tssr34511 3 95659388 to 95659400 12 - TSS region transcription start site region 34511
Tssr34512 3 95659559 to 95659579 20 - TSS region transcription start site region 34512
Tssr30632 3 95659622 to 95659713 91 + TSS region transcription start site region 30632
Tssr30633 3 95660999 to 95661052 53 + TSS region transcription start site region 30633
Tssr30634 3 95661677 to 95661751 74 + TSS region transcription start site region 30634
Tssr30635 3 95661759 to 95661816 57 + TSS region transcription start site region 30635
Tssr30636 3 95661859 to 95661905 46 + TSS region transcription start site region 30636
Tssr30637 3 95662032 to 95662055 23 + TSS region transcription start site region 30637
Tssr30638 3 95662077 to 95662150 73 + TSS region transcription start site region 30638
Tssr30639 3 95662182 to 95662197 15 + TSS region transcription start site region 30639
Tssr34513 3 95673782 to 95673793 11 - TSS region transcription start site region 34513
Tssr34514 3 95673813 to 95673825 12 - TSS region transcription start site region 34514
Tssr30640 3 95673975 to 95674007 32 + TSS region transcription start site region 30640
Tssr34515 3 95674134 to 95674153 19 - TSS region transcription start site region 34515
Tssr30641 3 95674465 to 95674482 17 + TSS region transcription start site region 30641
Tssr30642 3 95674486 to 95674502 16 + TSS region transcription start site region 30642
Adamtsl4 3 95676201 to 95687917 11716 - protein coding gene ADAMTS-like 4
Tssr34516 3 95681457 to 95681498 41 - TSS region transcription start site region 34516
Tssr34517 3 95684525 to 95684556 31 - TSS region transcription start site region 34517
Tssr34518 3 95685589 to 95685607 18 - TSS region transcription start site region 34518
Cpgi13518 3 95687511 to 95688256 745 CpG island CpG island 13518
Tssr34519 3 95687846 to 95687895 49 - TSS region transcription start site region 34519
D3Umi13 3 95701987 to 95702288 301 DNA segment DNA segment, Chr 3, University of Michigan 13
Tssr34520 3 95702003 to 95702034 31 - TSS region transcription start site region 34520
D3Umi14 3 95707581 to 95707988 407 DNA segment DNA segment, Chr 3, University of Michigan 14
Tssr34521 3 95710696 to 95710699 3 - TSS region transcription start site region 34521
D3Umi15 3 95711627 to 95712399 772 DNA segment DNA segment, Chr 3, University of Michigan 15
D3Umi16 3 95714368 to 95714863 495 DNA segment DNA segment, Chr 3, University of Michigan 16
D3Umi17 3 95715201 to 95715661 460 DNA segment DNA segment, Chr 3, University of Michigan 17
D3Umi18 3 95716342 to 95717133 791 DNA segment DNA segment, Chr 3, University of Michigan 18
D3Umi19 3 95716935 to 95718035 1100 DNA segment DNA segment, Chr 3, University of Michigan 19
D3Umi20 3 95717854 to 95718932 1078 DNA segment DNA segment, Chr 3, University of Michigan 20
D3Umi21 3 95718743 to 95719724 981 DNA segment DNA segment, Chr 3, University of Michigan 21
Tssr972 3 95719153 to 95719160 7 + TSS region transcription start site region 972
D3Umi22 3 95721222 to 95722311 1089 DNA segment DNA segment, Chr 3, University of Michigan 22
D3Umi23 3 95724043 to 95725118 1075 DNA segment DNA segment, Chr 3, University of Michigan 23
D3Umi24 3 95726149 to 95726690 541 DNA segment DNA segment, Chr 3, University of Michigan 24
Ecm1 3 95734147 to 95739569 5422 - protein coding gene extracellular matrix protein 1
D3Umi25 3 95734713 to 95735027 314 DNA segment DNA segment, Chr 3, University of Michigan 25
Mir7014 3 95734911 to 95734973 62 - miRNA gene microRNA 7014
Tssr34522 3 95735312 to 95735324 12 - TSS region transcription start site region 34522
Cpgi13519 3 95735813 to 95735971 158 CpG island CpG island 13519
Tssr34523 3 95735872 to 95735885 13 - TSS region transcription start site region 34523
Tssr30643 3 95735907 to 95735938 31 + TSS region transcription start site region 30643
Tssr34524 3 95735973 to 95735985 12 - TSS region transcription start site region 34524
Tssr34525 3 95736020 to 95736052 32 - TSS region transcription start site region 34525
Tssr34526 3 95736080 to 95736121 41 - TSS region transcription start site region 34526
Tssr30644 3 95736120 to 95736143 23 + TSS region transcription start site region 30644
Tssr30645 3 95736170 to 95736182 12 + TSS region transcription start site region 30645
Tssr34527 3 95736181 to 95736194 13 - TSS region transcription start site region 34527
Tssr34528 3 95736546 to 95736565 19 - TSS region transcription start site region 34528
Tssr34529 3 95736596 to 95736650 54 - TSS region transcription start site region 34529
Tssr34530 3 95736685 to 95736719 34 - TSS region transcription start site region 34530
Tssr34531 3 95737048 to 95737061 13 - TSS region transcription start site region 34531
Tssr34532 3 95737656 to 95737681 25 - TSS region transcription start site region 34532
Tssr34533 3 95737682 to 95737699 17 - TSS region transcription start site region 34533
Tssr34534 3 95737831 to 95737871 40 - TSS region transcription start site region 34534
Tssr34535 3 95737874 to 95737891 17 - TSS region transcription start site region 34535
Tssr34536 3 95738088 to 95738117 29 - TSS region transcription start site region 34536
Tssr34537 3 95738260 to 95738308 48 - TSS region transcription start site region 34537
Tssr34538 3 95739554 to 95739576 22 - TSS region transcription start site region 34538
Tars2 3 95739974 to 95754977 15003 - protein coding gene threonyl-tRNA synthetase 2, mitochondrial (putative)
Cpgi13520 3 95754626 to 95754984 358 CpG island CpG island 13520
Tssr34539 3 95754796 to 95754803 7 - TSS region transcription start site region 34539
Tssr34540 3 95754824 to 95754831 7 - TSS region transcription start site region 34540
Tssr34541 3 95754841 to 95754887 46 - TSS region transcription start site region 34541
Rprd2 3 95760341 to 95818863 58522 - protein coding gene regulation of nuclear pre-mRNA domain containing 2
Tssr34542 3 95761881 to 95761886 5 - TSS region transcription start site region 34542
Gm43436 3 95780724 to 95780870 146 + pseudogene predicted gene 43436
Gm26361 3 95796699 to 95796884 185 - snRNA gene predicted gene, 26361
Gm17815 3 95804855 to 95805749 894 + pseudogene predicted gene, 17815
Cpgi13521 3 95818197 to 95820031 1834 CpG island CpG island 13521
Tssr34543 3 95818747 to 95818801 54 - TSS region transcription start site region 34543
Tssr34544 3 95818821 to 95818877 56 - TSS region transcription start site region 34544
Tssr34545 3 95818895 to 95818907 12 - TSS region transcription start site region 34545
Tssr34546 3 95818941 to 95818990 49 - TSS region transcription start site region 34546
Gm29948 3 95819047 to 95821901 2854 + lncRNA gene predicted gene, 29948
Tssr34547 3 95819058 to 95819075 17 - TSS region transcription start site region 34547
Tssr34548 3 95819211 to 95819247 36 - TSS region transcription start site region 34548
Tssr30646 3 95819319 to 95819322 3 + TSS region transcription start site region 30646
Tssr34549 3 95819346 to 95819380 34 - TSS region transcription start site region 34549
Prpf3 3 95830124 to 95855885 25761 - protein coding gene pre-mRNA processing factor 3
Cpgi13522 3 95855420 to 95856120 700 CpG island CpG island 13522
Tssr34550 3 95855777 to 95855822 45 - TSS region transcription start site region 34550
Tssr34551 3 95855860 to 95855889 29 - TSS region transcription start site region 34551
Gm26594 3 95855966 to 95861485 5519 + lincRNA gene predicted gene, 26594
Mrps21 3 95862634 to 95871519 8885 - protein coding gene mitochondrial ribosomal protein S21
Cpgi13523 3 95865601 to 95865896 295 CpG island CpG island 13523
Cpgi13524 3 95871300 to 95871770 470 CpG island CpG island 13524
Tssr34552 3 95871470 to 95871511 41 - TSS region transcription start site region 34552
Tssr30647 3 95871519 to 95871580 61 + TSS region transcription start site region 30647
C920021L13Rik 3 95871522 to 95889093 17571 + antisense lncRNA gene RIKEN cDNA C920021L13 gene
Tssr30648 3 95871585 to 95871635 50 + TSS region transcription start site region 30648
Tssr30649 3 95877053 to 95877059 6 + TSS region transcription start site region 30649
Ciart 3 95878500 to 95882242 3742 - protein coding gene circadian associated repressor of transcription
Cpgi13525 3 95881857 to 95882994 1137 CpG island CpG island 13525
Tssr34553 3 95882031 to 95882047 16 - TSS region transcription start site region 34553
Tssr34554 3 95882181 to 95882190 9 - TSS region transcription start site region 34554
Tssr34555 3 95882193 to 95882231 38 - TSS region transcription start site region 34555
Tssr34556 3 95882232 to 95882244 12 - TSS region transcription start site region 34556
Tssr30650 3 95882570 to 95882575 5 + TSS region transcription start site region 30650
Tssr30651 3 95882727 to 95882740 13 + TSS region transcription start site region 30651
Tssr30652 3 95882753 to 95882777 24 + TSS region transcription start site region 30652
BC028528 3 95883954 to 95892005 8051 - protein coding gene cDNA sequence BC028528
Tssr34557 3 95891929 to 95891936 7 - TSS region transcription start site region 34557
Tssr34558 3 95891938 to 95891985 47 - TSS region transcription start site region 34558
Tssr34559 3 95892828 to 95892845 17 - TSS region transcription start site region 34559
Tssr34560 3 95892866 to 95892877 11 - TSS region transcription start site region 34560
Cpgi13526 3 95893701 to 95893997 296 CpG island CpG island 13526
Tssr30653 3 95893920 to 95893933 13 + TSS region transcription start site region 30653
Tssr30654 3 95893953 to 95893974 21 + TSS region transcription start site region 30654
Aph1a 3 95893969 to 95898288 4319 + protein coding gene aph1 homolog A, gamma secretase subunit
Tssr30655 3 95894013 to 95894031 18 + TSS region transcription start site region 30655
Cpgi13527 3 95894269 to 95894489 220 CpG island CpG island 13527
Car14 3 95897768 to 95904691 6923 - protein coding gene carbonic anhydrase 14
Tssr34561 3 95899491 to 95899529 38 - TSS region transcription start site region 34561
Tssr34562 3 95904631 to 95904646 15 - TSS region transcription start site region 34562
Cpgi13528 3 95904668 to 95904860 192 CpG island CpG island 13528
Tssr34563 3 95904683 to 95904692 9 - TSS region transcription start site region 34563
Tssr34564 3 95904698 to 95904710 12 - TSS region transcription start site region 34564
Tssr34565 3 95925195 to 95925200 5 - TSS region transcription start site region 34565
Gm46815 3 95925875 to 95929025 3150 - lncRNA gene predicted gene, 46815
Cpgi13529 3 95928711 to 95930738 2027 CpG island CpG island 13529
Tssr34566 3 95928823 to 95928834 11 - TSS region transcription start site region 34566