Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95354372-95554373

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Setdb1 3 95323525 to 95357202 33677 - protein coding gene SET domain, bifurcated 1
Gm37500 3 95356137 to 95357514 1377 + protein coding gene predicted gene, 37500
Cpgi13509 3 95356669 to 95356850 181 CpG island CpG island 13509
Cpgi13510 3 95357184 to 95357374 190 CpG island CpG island 13510
Tssr34476 3 95357186 to 95357211 25 - TSS region transcription start site region 34476
Tssr34477 3 95357217 to 95357244 27 - TSS region transcription start site region 34477
4930558C23Rik 3 95386461 to 95402841 16380 - lncRNA gene RIKEN cDNA 4930558C23 gene
Tssr34478 3 95402775 to 95402780 5 - TSS region transcription start site region 34478
Tssr34479 3 95402781 to 95402786 5 - TSS region transcription start site region 34479
Tssr34480 3 95402795 to 95402851 56 - TSS region transcription start site region 34480
Gm5070 3 95410346 to 95411207 861 - pseudogene predicted gene 5070
Cpgi13511 3 95411089 to 95411261 172 CpG island CpG island 13511
Gm9173 3 95415026 to 95415425 399 - pseudogene predicted gene 9173
Tssr30548 3 95427575 to 95427588 13 + TSS region transcription start site region 30548
Gm4349 3 95427671 to 95431087 3416 + pseudogene predicted gene 4349
Cpgi13512 3 95427903 to 95428086 183 CpG island CpG island 13512
Cpgi13513 3 95434274 to 95434906 632 CpG island CpG island 13513
Tssr30549 3 95434386 to 95434421 35 + TSS region transcription start site region 30549
Arnt 3 95434388 to 95497240 62852 + protein coding gene aryl hydrocarbon receptor nuclear translocator
Tssr30550 3 95434510 to 95434533 23 + TSS region transcription start site region 30550
Tssr30551 3 95443458 to 95443463 5 + TSS region transcription start site region 30551
Tssr30552 3 95454372 to 95454373 1 + TSS region transcription start site region 30552
Gm42672 3 95461191 to 95461542 351 + pseudogene predicted gene 42672
D3Umi11 3 95479715 to 95479844 129 DNA segment DNA segment, Chr 3, University of Michigan 11
Tssr30553 3 95481233 to 95481254 21 + TSS region transcription start site region 30553
Tssr30554 3 95496733 to 95496735 2 + TSS region transcription start site region 30554
Tssr30555 3 95499217 to 95499220 3 + TSS region transcription start site region 30555
Tssr30556 3 95499223 to 95499229 6 + TSS region transcription start site region 30556
Tssr30557 3 95499256 to 95499265 9 + TSS region transcription start site region 30557
Ctsk 3 95499256 to 95509362 10106 + protein coding gene cathepsin K
Tssr30558 3 95499273 to 95499289 16 + TSS region transcription start site region 30558
Tssr30559 3 95499792 to 95499811 19 + TSS region transcription start site region 30559
Tssr30560 3 95499856 to 95499868 12 + TSS region transcription start site region 30560
Tssr30561 3 95499891 to 95499896 5 + TSS region transcription start site region 30561
Tssr30562 3 95502523 to 95502551 28 + TSS region transcription start site region 30562
Tssr34481 3 95511735 to 95511740 5 - TSS region transcription start site region 34481
Tssr34482 3 95511856 to 95511870 14 - TSS region transcription start site region 34482
Tssr34483 3 95518977 to 95518991 14 - TSS region transcription start site region 34483
Tssr34484 3 95519036 to 95519056 20 - TSS region transcription start site region 34484
Tssr34485 3 95521138 to 95521163 25 - TSS region transcription start site region 34485
Gm40096 3 95523211 to 95524499 1288 - lncRNA gene predicted gene, 40096
Tssr34486 3 95524815 to 95524839 24 - TSS region transcription start site region 34486
Tssr34487 3 95524879 to 95524895 16 - TSS region transcription start site region 34487
Tssr30563 3 95526777 to 95526797 20 + TSS region transcription start site region 30563
Ctss 3 95526786 to 95556403 29617 + protein coding gene cathepsin S
Tssr30564 3 95526800 to 95526811 11 + TSS region transcription start site region 30564
Tssr30565 3 95526819 to 95526871 52 + TSS region transcription start site region 30565
Tssr30566 3 95526878 to 95526889 11 + TSS region transcription start site region 30566
Tssr30567 3 95529428 to 95529536 108 + TSS region transcription start site region 30567
Tssr34488 3 95529520 to 95529570 50 - TSS region transcription start site region 34488
Tssr30568 3 95530181 to 95530200 19 + TSS region transcription start site region 30568
Hmgb1-ps5 3 95530418 to 95530974 556 + pseudogene high mobility group box 1, pseudogene 5
Tssr30569 3 95531917 to 95531925 8 + TSS region transcription start site region 30569
Tssr30570 3 95536902 to 95536920 18 + TSS region transcription start site region 30570
Tssr30571 3 95538708 to 95538738 30 + TSS region transcription start site region 30571
Tssr34489 3 95538740 to 95538768 28 - TSS region transcription start site region 34489
Tssr30572 3 95538747 to 95538816 69 + TSS region transcription start site region 30572
Tssr34490 3 95538812 to 95538848 36 - TSS region transcription start site region 34490
Tssr34491 3 95539205 to 95539225 20 - TSS region transcription start site region 34491
Tssr30573 3 95540028 to 95540041 13 + TSS region transcription start site region 30573
Tssr30574 3 95540064 to 95540083 19 + TSS region transcription start site region 30574
Tssr30575 3 95540188 to 95540190 2 + TSS region transcription start site region 30575
Tssr30576 3 95540267 to 95540318 51 + TSS region transcription start site region 30576
Tssr34492 3 95540336 to 95540354 18 - TSS region transcription start site region 34492
Tssr30577 3 95541607 to 95541623 16 + TSS region transcription start site region 30577
Tssr30578 3 95541638 to 95541662 24 + TSS region transcription start site region 30578
Tssr30579 3 95541698 to 95541717 19 + TSS region transcription start site region 30579
Tssr30580 3 95543009 to 95543137 128 + TSS region transcription start site region 30580
Tssr34493 3 95543121 to 95543165 44 - TSS region transcription start site region 34493
Tssr30581 3 95545331 to 95545345 14 + TSS region transcription start site region 30581
Tssr30582 3 95545346 to 95545352 6 + TSS region transcription start site region 30582
Tssr30583 3 95545354 to 95545365 11 + TSS region transcription start site region 30583
Tssr34494 3 95545364 to 95545386 22 - TSS region transcription start site region 34494
Tssr30584 3 95545368 to 95545387 19 + TSS region transcription start site region 30584
Tssr34495 3 95545388 to 95545418 30 - TSS region transcription start site region 34495
Tssr30585 3 95545398 to 95545430 32 + TSS region transcription start site region 30585
Tssr34496 3 95545440 to 95545502 62 - TSS region transcription start site region 34496
Tssr30586 3 95545459 to 95545471 12 + TSS region transcription start site region 30586
Tssr30587 3 95545472 to 95545489 17 + TSS region transcription start site region 30587
Tssr30588 3 95545498 to 95545513 15 + TSS region transcription start site region 30588
Tssr30589 3 95545521 to 95545541 20 + TSS region transcription start site region 30589
Tssr34497 3 95545525 to 95545537 12 - TSS region transcription start site region 34497
Tssr30590 3 95546795 to 95546804 9 + TSS region transcription start site region 30590
Tssr30591 3 95547234 to 95547247 13 + TSS region transcription start site region 30591
Tssr30592 3 95550048 to 95550060 12 + TSS region transcription start site region 30592
Tssr30593 3 95550074 to 95550086 12 + TSS region transcription start site region 30593
Tssr970 3 95550091 to 95550097 6 + TSS region transcription start site region 970
Tssr30594 3 95550101 to 95550119 18 + TSS region transcription start site region 30594
Tssr34498 3 95550118 to 95550158 40 - TSS region transcription start site region 34498
Tssr30595 3 95550125 to 95550129 4 + TSS region transcription start site region 30595