Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95267784-95437977

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prune1 3 95253674 to 95282076 28402 - protein coding gene prune exopolyphosphatase
Cpgi13506 3 95281245 to 95281989 744 CpG island CpG island 13506
Tssr30516 3 95281328 to 95281348 20 + TSS region transcription start site region 30516
Tssr30517 3 95281358 to 95281391 33 + TSS region transcription start site region 30517
Tssr34459 3 95281663 to 95281687 24 - TSS region transcription start site region 34459
Tssr34460 3 95281710 to 95281748 38 - TSS region transcription start site region 34460
Tssr34461 3 95281762 to 95281793 31 - TSS region transcription start site region 34461
Tssr34462 3 95281795 to 95281814 19 - TSS region transcription start site region 34462
Tssr34463 3 95281833 to 95281843 10 - TSS region transcription start site region 34463
Tssr30518 3 95282474 to 95282496 22 + TSS region transcription start site region 30518
Tssr30519 3 95282498 to 95282555 57 + TSS region transcription start site region 30519
Mindy1 3 95282503 to 95296166 13663 + protein coding gene MINDY lysine 48 deubiquitinase 1
Tssr30520 3 95282587 to 95282605 18 + TSS region transcription start site region 30520
Cpgi13507 3 95282866 to 95283714 848 CpG island CpG island 13507
Tssr30521 3 95282897 to 95282942 45 + TSS region transcription start site region 30521
Tssr30522 3 95282949 to 95282958 9 + TSS region transcription start site region 30522
Tssr30523 3 95282962 to 95282973 11 + TSS region transcription start site region 30523
Tssr30524 3 95282997 to 95283010 13 + TSS region transcription start site region 30524
Tssr30525 3 95283013 to 95283056 43 + TSS region transcription start site region 30525
Tssr969 3 95283060 to 95283084 24 - TSS region transcription start site region 969
Tssr30526 3 95283074 to 95283112 38 + TSS region transcription start site region 30526
Tssr30527 3 95283126 to 95283140 14 + TSS region transcription start site region 30527
Tssr30528 3 95283164 to 95283188 24 + TSS region transcription start site region 30528
Tssr30529 3 95283196 to 95283208 12 + TSS region transcription start site region 30529
Tssr30530 3 95283209 to 95283222 13 + TSS region transcription start site region 30530
Tssr30531 3 95283263 to 95283294 31 + TSS region transcription start site region 30531
Tssr30532 3 95283323 to 95283333 10 + TSS region transcription start site region 30532
Tssr34464 3 95283375 to 95283454 79 - TSS region transcription start site region 34464
Tssr30533 3 95283395 to 95283406 11 + TSS region transcription start site region 30533
Tssr30534 3 95283444 to 95283517 73 + TSS region transcription start site region 30534
Tssr34465 3 95283493 to 95283541 48 - TSS region transcription start site region 34465
Tssr30535 3 95286738 to 95286782 44 + TSS region transcription start site region 30535
Tssr30536 3 95287640 to 95287654 14 + TSS region transcription start site region 30536
Tssr34466 3 95293676 to 95293721 45 - TSS region transcription start site region 34466
Anxa9 3 95296096 to 95307176 11080 - protein coding gene annexin A9
Tssr34467 3 95306794 to 95306810 16 - TSS region transcription start site region 34467
6330562C20Rik 3 95307076 to 95315127 8051 - antisense lncRNA gene RIKEN cDNA 6330562C20 gene
Tssr34468 3 95307132 to 95307181 49 - TSS region transcription start site region 34468
Tssr34469 3 95307186 to 95307202 16 - TSS region transcription start site region 34469
Tssr34470 3 95307449 to 95307459 10 - TSS region transcription start site region 34470
Cpgi13508 3 95314766 to 95315836 1070 CpG island CpG island 13508
Cers2 3 95314805 to 95323599 8794 + protein coding gene ceramide synthase 2
Tssr30537 3 95314832 to 95314866 34 + TSS region transcription start site region 30537
Tssr34471 3 95315086 to 95315103 17 - TSS region transcription start site region 34471
Tssr34472 3 95315152 to 95315217 65 - TSS region transcription start site region 34472
Tssr30538 3 95315240 to 95315273 33 + TSS region transcription start site region 30538
Tssr30539 3 95315282 to 95315302 20 + TSS region transcription start site region 30539
Tssr34473 3 95315733 to 95315759 26 - TSS region transcription start site region 34473
Tssr30540 3 95318782 to 95318793 11 + TSS region transcription start site region 30540
Tssr30541 3 95318801 to 95318819 18 + TSS region transcription start site region 30541
Tssr30542 3 95318824 to 95318870 46 + TSS region transcription start site region 30542
Tssr30543 3 95319968 to 95319977 9 + TSS region transcription start site region 30543
Tssr30544 3 95320147 to 95320165 18 + TSS region transcription start site region 30544
Tssr30545 3 95320167 to 95320203 36 + TSS region transcription start site region 30545
Tssr30546 3 95320470 to 95320493 23 + TSS region transcription start site region 30546
Tssr30547 3 95320992 to 95321014 22 + TSS region transcription start site region 30547
Setdb1 3 95323525 to 95357202 33677 - protein coding gene SET domain, bifurcated 1
Tssr34474 3 95331686 to 95331690 4 - TSS region transcription start site region 34474
Tssr34475 3 95339969 to 95339990 21 - TSS region transcription start site region 34475
Gm42578 3 95352784 to 95352977 193 + pseudogene predicted gene 42578
Gm37500 3 95356137 to 95357514 1377 + protein coding gene predicted gene, 37500
Cpgi13509 3 95356669 to 95356850 181 CpG island CpG island 13509
Cpgi13510 3 95357184 to 95357374 190 CpG island CpG island 13510
Tssr34476 3 95357186 to 95357211 25 - TSS region transcription start site region 34476
Tssr34477 3 95357217 to 95357244 27 - TSS region transcription start site region 34477
4930558C23Rik 3 95386461 to 95402841 16380 - lncRNA gene RIKEN cDNA 4930558C23 gene
Tssr34478 3 95402775 to 95402780 5 - TSS region transcription start site region 34478
Tssr34479 3 95402781 to 95402786 5 - TSS region transcription start site region 34479
Tssr34480 3 95402795 to 95402851 56 - TSS region transcription start site region 34480
Gm5070 3 95410346 to 95411207 861 - pseudogene predicted gene 5070
Cpgi13511 3 95411089 to 95411261 172 CpG island CpG island 13511
Gm9173 3 95415026 to 95415425 399 - pseudogene predicted gene 9173
Tssr30548 3 95427575 to 95427588 13 + TSS region transcription start site region 30548
Gm4349 3 95427671 to 95431087 3416 + pseudogene predicted gene 4349
Cpgi13512 3 95427903 to 95428086 183 CpG island CpG island 13512
Cpgi13513 3 95434274 to 95434906 632 CpG island CpG island 13513
Tssr30549 3 95434386 to 95434421 35 + TSS region transcription start site region 30549
Arnt 3 95434388 to 95497240 62852 + protein coding gene aryl hydrocarbon receptor nuclear translocator
Tssr30550 3 95434510 to 95434533 23 + TSS region transcription start site region 30550