Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:95108606-96208625

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528 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13497 3 95110869 to 95111618 749 CpG island CpG island 13497
Tssr30489 3 95111013 to 95111087 74 + TSS region transcription start site region 30489
Vps72 3 95111042 to 95123051 12009 + protein coding gene vacuolar protein sorting 72
D3Umi9 3 95122288 to 95122641 353 DNA segment DNA segment, Chr 3, University of Michigan 9
Tssr30490 3 95122520 to 95122532 12 + TSS region transcription start site region 30490
Tssr967 3 95124437 to 95124449 12 + TSS region transcription start site region 967
Tssr30491 3 95124451 to 95124465 14 + TSS region transcription start site region 30491
Tmod4 3 95124476 to 95129209 4733 + protein coding gene tropomodulin 4
Tssr30492 3 95124482 to 95124560 78 + TSS region transcription start site region 30492
Tssr30493 3 95126189 to 95126199 10 + TSS region transcription start site region 30493
Tssr30494 3 95126206 to 95126213 7 + TSS region transcription start site region 30494
Tssr30495 3 95126218 to 95126227 9 + TSS region transcription start site region 30495
Tssr30496 3 95126240 to 95126249 9 + TSS region transcription start site region 30496
Tssr30497 3 95127425 to 95127460 35 + TSS region transcription start site region 30497
Scnm1 3 95129719 to 95134045 4326 - protein coding gene sodium channel modifier 1
Tssr30498 3 95131435 to 95131440 5 + TSS region transcription start site region 30498
D3Umi10 3 95133727 to 95134239 512 DNA segment DNA segment, Chr 3, University of Michigan 10
Cpgi13498 3 95133807 to 95134055 248 CpG island CpG island 13498
Tssr34419 3 95133898 to 95133913 15 - TSS region transcription start site region 34419
Tssr34420 3 95133936 to 95133988 52 - TSS region transcription start site region 34420
Tssr34421 3 95133989 to 95134017 28 - TSS region transcription start site region 34421
Lysmd1 3 95134088 to 95139518 5430 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 1
Tssr968 3 95137923 to 95137946 23 + TSS region transcription start site region 968
Mir8099-1 3 95139060 to 95139186 126 - miRNA gene microRNA 8099-1
Tnfaip8l2 3 95139521 to 95142360 2839 - protein coding gene tumor necrosis factor, alpha-induced protein 8-like 2
Tssr34422 3 95139842 to 95139865 23 - TSS region transcription start site region 34422
Cpgi13499 3 95140051 to 95140637 586 CpG island CpG island 13499
Tssr34423 3 95140083 to 95140121 38 - TSS region transcription start site region 34423
Tssr34424 3 95142346 to 95142362 16 - TSS region transcription start site region 34424
Tssr34425 3 95142363 to 95142374 11 - TSS region transcription start site region 34425
Gm9169 3 95144371 to 95144906 535 + pseudogene predicted gene 9169
Cpgi13500 3 95160057 to 95161602 1545 CpG island CpG island 13500
Tssr30499 3 95160449 to 95160505 56 + TSS region transcription start site region 30499
Sema6c 3 95160457 to 95174024 13567 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Tssr30500 3 95160969 to 95160973 4 + TSS region transcription start site region 30500
Tssr30501 3 95164265 to 95164281 16 + TSS region transcription start site region 30501
Tssr30502 3 95164309 to 95164333 24 + TSS region transcription start site region 30502
Cpgi13501 3 95172037 to 95173926 1889 CpG island CpG island 13501
Cpgi13502 3 95174203 to 95174483 280 CpG island CpG island 13502
Gabpb2 3 95181766 to 95217916 36150 - protein coding gene GA repeat binding protein, beta 2
Tssr34426 3 95190762 to 95190767 5 - TSS region transcription start site region 34426
Tssr34427 3 95193736 to 95193738 2 - TSS region transcription start site region 34427
Tssr30503 3 95217417 to 95217484 67 + TSS region transcription start site region 30503
Gm16740 3 95217457 to 95226658 9201 + antisense lncRNA gene predicted gene, 16740
Cpgi13503 3 95217484 to 95218188 704 CpG island CpG island 13503
Tssr34428 3 95217690 to 95217728 38 - TSS region transcription start site region 34428
Tssr34429 3 95217741 to 95217765 24 - TSS region transcription start site region 34429
Tssr34430 3 95217877 to 95217918 41 - TSS region transcription start site region 34430
Tssr34431 3 95217931 to 95217989 58 - TSS region transcription start site region 34431
Tssr30504 3 95218000 to 95218059 59 + TSS region transcription start site region 30504
Tssr30505 3 95218070 to 95218082 12 + TSS region transcription start site region 30505
Mllt11 3 95219135 to 95232171 13036 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11
Tssr34432 3 95219556 to 95219568 12 - TSS region transcription start site region 34432
Tssr34433 3 95219730 to 95219741 11 - TSS region transcription start site region 34433
Tssr34434 3 95219901 to 95219917 16 - TSS region transcription start site region 34434
Tssr34435 3 95220127 to 95220187 60 - TSS region transcription start site region 34435
Tssr34436 3 95220219 to 95220232 13 - TSS region transcription start site region 34436
Cpgi13504 3 95228051 to 95229691 1640 CpG island CpG island 13504
Tssr34437 3 95228147 to 95228164 17 - TSS region transcription start site region 34437
Tssr34438 3 95228169 to 95228261 92 - TSS region transcription start site region 34438
Tssr34439 3 95228262 to 95228273 11 - TSS region transcription start site region 34439
Tssr34440 3 95228275 to 95228286 11 - TSS region transcription start site region 34440
Tssr34441 3 95228291 to 95228304 13 - TSS region transcription start site region 34441
Tssr30506 3 95228310 to 95228368 58 + TSS region transcription start site region 30506
Tssr34442 3 95228332 to 95228339 7 - TSS region transcription start site region 34442
Tssr34443 3 95228593 to 95228631 38 - TSS region transcription start site region 34443
Tssr34444 3 95228636 to 95228719 83 - TSS region transcription start site region 34444
Cdc42se1 3 95228732 to 95236409 7677 + protein coding gene CDC42 small effector 1
Tssr30507 3 95228747 to 95228752 5 + TSS region transcription start site region 30507
Tssr30508 3 95228755 to 95228832 77 + TSS region transcription start site region 30508
Tssr30509 3 95228836 to 95228847 11 + TSS region transcription start site region 30509
Tssr34445 3 95228870 to 95228879 9 - TSS region transcription start site region 34445
Tssr34446 3 95228880 to 95228908 28 - TSS region transcription start site region 34446
Tssr30510 3 95228959 to 95228980 21 + TSS region transcription start site region 30510
Tssr34447 3 95229481 to 95229508 27 - TSS region transcription start site region 34447
Tssr34448 3 95230394 to 95230419 25 - TSS region transcription start site region 34448
Tssr30511 3 95231476 to 95231511 35 + TSS region transcription start site region 30511
Tssr34449 3 95232161 to 95232165 4 - TSS region transcription start site region 34449
Tssr34450 3 95232167 to 95232180 13 - TSS region transcription start site region 34450
Tssr30512 3 95232291 to 95232315 24 + TSS region transcription start site region 30512
Tssr30513 3 95232326 to 95232349 23 + TSS region transcription start site region 30513
Tssr30514 3 95234704 to 95234722 18 + TSS region transcription start site region 30514
Tssr30515 3 95235256 to 95235301 45 + TSS region transcription start site region 30515
Gm128 3 95236920 to 95241109 4189 - protein coding gene predicted gene 128
Cpgi13505 3 95240775 to 95241076 301 CpG island CpG island 13505
Tssr34451 3 95241020 to 95241025 5 - TSS region transcription start site region 34451
Tssr34452 3 95241044 to 95241103 59 - TSS region transcription start site region 34452
Tssr34453 3 95241130 to 95241146 16 - TSS region transcription start site region 34453
Tssr34454 3 95241158 to 95241182 24 - TSS region transcription start site region 34454
Bnipl 3 95241293 to 95251193 9900 - protein coding gene BCL2/adenovirus E1B 19kD interacting protein like
Tssr34455 3 95251104 to 95251118 14 - TSS region transcription start site region 34455
Tssr34456 3 95251120 to 95251144 24 - TSS region transcription start site region 34456
Tssr34457 3 95251148 to 95251160 12 - TSS region transcription start site region 34457
Prune1 3 95253674 to 95282076 28402 - protein coding gene prune exopolyphosphatase
Tssr34458 3 95266133 to 95266178 45 - TSS region transcription start site region 34458
Cpgi13506 3 95281245 to 95281989 744 CpG island CpG island 13506
Tssr30516 3 95281328 to 95281348 20 + TSS region transcription start site region 30516
Tssr30517 3 95281358 to 95281391 33 + TSS region transcription start site region 30517
Tssr34459 3 95281663 to 95281687 24 - TSS region transcription start site region 34459
Tssr34460 3 95281710 to 95281748 38 - TSS region transcription start site region 34460
Tssr34461 3 95281762 to 95281793 31 - TSS region transcription start site region 34461
Tssr34462 3 95281795 to 95281814 19 - TSS region transcription start site region 34462
Tssr34463 3 95281833 to 95281843 10 - TSS region transcription start site region 34463
Tssr30518 3 95282474 to 95282496 22 + TSS region transcription start site region 30518
Tssr30519 3 95282498 to 95282555 57 + TSS region transcription start site region 30519
Mindy1 3 95282503 to 95296166 13663 + protein coding gene MINDY lysine 48 deubiquitinase 1
Tssr30520 3 95282587 to 95282605 18 + TSS region transcription start site region 30520
Cpgi13507 3 95282866 to 95283714 848 CpG island CpG island 13507
Tssr30521 3 95282897 to 95282942 45 + TSS region transcription start site region 30521
Tssr30522 3 95282949 to 95282958 9 + TSS region transcription start site region 30522
Tssr30523 3 95282962 to 95282973 11 + TSS region transcription start site region 30523
Tssr30524 3 95282997 to 95283010 13 + TSS region transcription start site region 30524
Tssr30525 3 95283013 to 95283056 43 + TSS region transcription start site region 30525
Tssr969 3 95283060 to 95283084 24 - TSS region transcription start site region 969
Tssr30526 3 95283074 to 95283112 38 + TSS region transcription start site region 30526
Tssr30527 3 95283126 to 95283140 14 + TSS region transcription start site region 30527
Tssr30528 3 95283164 to 95283188 24 + TSS region transcription start site region 30528
Tssr30529 3 95283196 to 95283208 12 + TSS region transcription start site region 30529
Tssr30530 3 95283209 to 95283222 13 + TSS region transcription start site region 30530
Tssr30531 3 95283263 to 95283294 31 + TSS region transcription start site region 30531
Tssr30532 3 95283323 to 95283333 10 + TSS region transcription start site region 30532
Tssr34464 3 95283375 to 95283454 79 - TSS region transcription start site region 34464
Tssr30533 3 95283395 to 95283406 11 + TSS region transcription start site region 30533
Tssr30534 3 95283444 to 95283517 73 + TSS region transcription start site region 30534
Tssr34465 3 95283493 to 95283541 48 - TSS region transcription start site region 34465
Tssr30535 3 95286738 to 95286782 44 + TSS region transcription start site region 30535
Tssr30536 3 95287640 to 95287654 14 + TSS region transcription start site region 30536
Tssr34466 3 95293676 to 95293721 45 - TSS region transcription start site region 34466
Anxa9 3 95296096 to 95307176 11080 - protein coding gene annexin A9
Tssr34467 3 95306794 to 95306810 16 - TSS region transcription start site region 34467
6330562C20Rik 3 95307076 to 95315127 8051 - antisense lncRNA gene RIKEN cDNA 6330562C20 gene
Tssr34468 3 95307132 to 95307181 49 - TSS region transcription start site region 34468
Tssr34469 3 95307186 to 95307202 16 - TSS region transcription start site region 34469
Tssr34470 3 95307449 to 95307459 10 - TSS region transcription start site region 34470
Cpgi13508 3 95314766 to 95315836 1070 CpG island CpG island 13508
Cers2 3 95314805 to 95323599 8794 + protein coding gene ceramide synthase 2
Tssr30537 3 95314832 to 95314866 34 + TSS region transcription start site region 30537
Tssr34471 3 95315086 to 95315103 17 - TSS region transcription start site region 34471
Tssr34472 3 95315152 to 95315217 65 - TSS region transcription start site region 34472
Tssr30538 3 95315240 to 95315273 33 + TSS region transcription start site region 30538
Tssr30539 3 95315282 to 95315302 20 + TSS region transcription start site region 30539
Tssr34473 3 95315733 to 95315759 26 - TSS region transcription start site region 34473
Tssr30540 3 95318782 to 95318793 11 + TSS region transcription start site region 30540
Tssr30541 3 95318801 to 95318819 18 + TSS region transcription start site region 30541
Tssr30542 3 95318824 to 95318870 46 + TSS region transcription start site region 30542
Tssr30543 3 95319968 to 95319977 9 + TSS region transcription start site region 30543
Tssr30544 3 95320147 to 95320165 18 + TSS region transcription start site region 30544
Tssr30545 3 95320167 to 95320203 36 + TSS region transcription start site region 30545
Tssr30546 3 95320470 to 95320493 23 + TSS region transcription start site region 30546
Tssr30547 3 95320992 to 95321014 22 + TSS region transcription start site region 30547
Setdb1 3 95323525 to 95357202 33677 - protein coding gene SET domain, bifurcated 1
Tssr34474 3 95331686 to 95331690 4 - TSS region transcription start site region 34474
Tssr34475 3 95339969 to 95339990 21 - TSS region transcription start site region 34475
Gm42578 3 95352784 to 95352977 193 + pseudogene predicted gene 42578
Gm37500 3 95356137 to 95357514 1377 + protein coding gene predicted gene, 37500
Cpgi13509 3 95356669 to 95356850 181 CpG island CpG island 13509
Cpgi13510 3 95357184 to 95357374 190 CpG island CpG island 13510
Tssr34476 3 95357186 to 95357211 25 - TSS region transcription start site region 34476
Tssr34477 3 95357217 to 95357244 27 - TSS region transcription start site region 34477
4930558C23Rik 3 95386461 to 95402841 16380 - lncRNA gene RIKEN cDNA 4930558C23 gene
Tssr34478 3 95402775 to 95402780 5 - TSS region transcription start site region 34478
Tssr34479 3 95402781 to 95402786 5 - TSS region transcription start site region 34479
Tssr34480 3 95402795 to 95402851 56 - TSS region transcription start site region 34480
Gm5070 3 95410346 to 95411207 861 - pseudogene predicted gene 5070
Cpgi13511 3 95411089 to 95411261 172 CpG island CpG island 13511
Gm9173 3 95415026 to 95415425 399 - pseudogene predicted gene 9173
Tssr30548 3 95427575 to 95427588 13 + TSS region transcription start site region 30548
Gm4349 3 95427671 to 95431087 3416 + pseudogene predicted gene 4349
Cpgi13512 3 95427903 to 95428086 183 CpG island CpG island 13512
Cpgi13513 3 95434274 to 95434906 632 CpG island CpG island 13513
Tssr30549 3 95434386 to 95434421 35 + TSS region transcription start site region 30549
Arnt 3 95434388 to 95497240 62852 + protein coding gene aryl hydrocarbon receptor nuclear translocator
Tssr30550 3 95434510 to 95434533 23 + TSS region transcription start site region 30550
Tssr30551 3 95443458 to 95443463 5 + TSS region transcription start site region 30551
Tssr30552 3 95454372 to 95454373 1 + TSS region transcription start site region 30552
Gm42672 3 95461191 to 95461542 351 + pseudogene predicted gene 42672
D3Umi11 3 95479715 to 95479844 129 DNA segment DNA segment, Chr 3, University of Michigan 11
Tssr30553 3 95481233 to 95481254 21 + TSS region transcription start site region 30553
Tssr30554 3 95496733 to 95496735 2 + TSS region transcription start site region 30554
Tssr30555 3 95499217 to 95499220 3 + TSS region transcription start site region 30555
Tssr30556 3 95499223 to 95499229 6 + TSS region transcription start site region 30556
Tssr30557 3 95499256 to 95499265 9 + TSS region transcription start site region 30557
Ctsk 3 95499256 to 95509362 10106 + protein coding gene cathepsin K
Tssr30558 3 95499273 to 95499289 16 + TSS region transcription start site region 30558
Tssr30559 3 95499792 to 95499811 19 + TSS region transcription start site region 30559
Tssr30560 3 95499856 to 95499868 12 + TSS region transcription start site region 30560
Tssr30561 3 95499891 to 95499896 5 + TSS region transcription start site region 30561
Tssr30562 3 95502523 to 95502551 28 + TSS region transcription start site region 30562
Tssr34481 3 95511735 to 95511740 5 - TSS region transcription start site region 34481
Tssr34482 3 95511856 to 95511870 14 - TSS region transcription start site region 34482
Tssr34483 3 95518977 to 95518991 14 - TSS region transcription start site region 34483
Tssr34484 3 95519036 to 95519056 20 - TSS region transcription start site region 34484
Tssr34485 3 95521138 to 95521163 25 - TSS region transcription start site region 34485
Gm40096 3 95523211 to 95524499 1288 - lncRNA gene predicted gene, 40096
Tssr34486 3 95524815 to 95524839 24 - TSS region transcription start site region 34486
Tssr34487 3 95524879 to 95524895 16 - TSS region transcription start site region 34487
Tssr30563 3 95526777 to 95526797 20 + TSS region transcription start site region 30563
Ctss 3 95526786 to 95556403 29617 + protein coding gene cathepsin S
Tssr30564 3 95526800 to 95526811 11 + TSS region transcription start site region 30564
Tssr30565 3 95526819 to 95526871 52 + TSS region transcription start site region 30565