Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:94580489-95200610

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx27 3 94497544 to 94582716 85172 - protein coding gene sorting nexin family member 27
Cpgi13485 3 94581845 to 94582927 1082 CpG island CpG island 13485
Tssr34395 3 94582548 to 94582573 25 - TSS region transcription start site region 34395
Tssr34396 3 94582664 to 94582676 12 - TSS region transcription start site region 34396
Tssr34397 3 94582687 to 94582708 21 - TSS region transcription start site region 34397
Tssr34398 3 94582720 to 94582741 21 - TSS region transcription start site region 34398
Tssr34399 3 94582759 to 94582770 11 - TSS region transcription start site region 34399
Tssr34400 3 94588049 to 94588079 30 - TSS region transcription start site region 34400
Gm15235 3 94589466 to 94589659 193 + pseudogene predicted gene 15235
Tssr30462 3 94591313 to 94591320 7 + TSS region transcription start site region 30462
Rpl31-ps11 3 94604408 to 94604784 376 - pseudogene ribosomal protein L31, pseudogene 11
Tuft1 3 94612757 to 94658872 46115 - protein coding gene tuftelin 1
Gm10972 3 94643112 to 94643600 488 + protein coding gene predicted gene 10972
Cpgi13486 3 94658149 to 94658381 232 CpG island CpG island 13486
Tssr34401 3 94658843 to 94658878 35 - TSS region transcription start site region 34401
Gm15234 3 94658961 to 94660115 1154 + lincRNA gene predicted gene 15234
BC021767 3 94660589 to 94667152 6563 - pseudogene cDNA sequence BC021767
Cpgi13487 3 94669925 to 94670085 160 CpG island CpG island 13487
Gm46814 3 94677212 to 94684670 7458 + lncRNA gene predicted gene, 46814
Tssr34402 3 94680858 to 94680873 15 - TSS region transcription start site region 34402
Tssr30463 3 94681059 to 94681066 7 + TSS region transcription start site region 30463
Tssr30464 3 94693562 to 94693568 6 + TSS region transcription start site region 30464
Selenbp2 3 94693573 to 94704406 10833 + protein coding gene selenium binding protein 2
Tssr30465 3 94699590 to 94699593 3 + TSS region transcription start site region 30465
Gm15264 3 94720023 to 94758116 38093 - pseudogene predicted gene 15264
Gm43711 3 94737343 to 94737715 372 + pseudogene predicted gene 43711
Tssr34403 3 94757411 to 94757416 5 - TSS region transcription start site region 34403
Cgn 3 94760069 to 94786492 26423 - protein coding gene cingulin
D3Umi5 3 94775664 to 94775883 219 DNA segment DNA segment, Chr 3, University of Michigan 5
Tssr34404 3 94783108 to 94783118 10 - TSS region transcription start site region 34404
Cpgi13488 3 94786108 to 94787016 908 CpG island CpG island 13488
Tssr34405 3 94786430 to 94786466 36 - TSS region transcription start site region 34405
Tssr34406 3 94786469 to 94786490 21 - TSS region transcription start site region 34406
Tssr30466 3 94786722 to 94786738 16 + TSS region transcription start site region 30466
Tssr30467 3 94787653 to 94787664 11 + TSS region transcription start site region 30467
Gm40094 3 94820847 to 94822308 1461 + lncRNA gene predicted gene, 40094
Cpgi13489 3 94821122 to 94821611 489 CpG island CpG island 13489
Gm15263 3 94832978 to 94833531 553 + pseudogene predicted gene 15263
Cpgi13490 3 94837309 to 94838463 1154 CpG island CpG island 13490
Tssr30468 3 94837380 to 94837419 39 + TSS region transcription start site region 30468
Tssr30469 3 94837428 to 94837458 30 + TSS region transcription start site region 30469
Tssr30470 3 94837533 to 94837564 31 + TSS region transcription start site region 30470
Pogz 3 94837567 to 94882326 44759 + protein coding gene pogo transposable element with ZNF domain
Tssr30471 3 94837611 to 94837627 16 + TSS region transcription start site region 30471
Tssr30472 3 94837682 to 94837693 11 + TSS region transcription start site region 30472
Tssr30473 3 94837702 to 94837723 21 + TSS region transcription start site region 30473
Tssr34407 3 94838344 to 94838350 6 - TSS region transcription start site region 34407
Tssr30474 3 94864153 to 94864165 12 + TSS region transcription start site region 30474
Psmb4 3 94884324 to 94886958 2634 - protein coding gene proteasome (prosome, macropain) subunit, beta type 4
Cpgi13491 3 94886356 to 94887116 760 CpG island CpG island 13491
Tssr34408 3 94886920 to 94886942 22 - TSS region transcription start site region 34408
Tssr34409 3 94886945 to 94886956 11 - TSS region transcription start site region 34409
Tssr30475 3 94886966 to 94886998 32 + TSS region transcription start site region 30475
D3Mit140 3 94890489 to 94890610 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 140
Gm36237 3 94917965 to 94923003 5038 + lncRNA gene predicted gene, 36237
Gm26279 3 94920322 to 94920423 101 - snRNA gene predicted gene, 26279
Tssr30476 3 94933041 to 94933073 32 + TSS region transcription start site region 30476
Selenbp1 3 94933083 to 94944758 11675 + protein coding gene selenium binding protein 1
Tssr30477 3 94933101 to 94933108 7 + TSS region transcription start site region 30477
D3Umi6 3 94952905 to 94953142 237 DNA segment DNA segment, Chr 3, University of Michigan 6
4930532J02Rik 3 94953307 to 94953986 679 unclassified gene RIKEN cDNA 4930532J02 gene
Cpgi13492 3 94954025 to 94954601 576 CpG island CpG island 13492
Rfx5 3 94954075 to 94961561 7486 + protein coding gene regulatory factor X, 5 (influences HLA class II expression)
Tssr30478 3 94954119 to 94954220 101 + TSS region transcription start site region 30478
B230398E01Rik 3 94959034 to 94962048 3014 - antisense lncRNA gene RIKEN cDNA B230398E01 gene
Cpgi13493 3 94974572 to 94975378 806 CpG island CpG island 13493
Tssr30479 3 94974693 to 94974719 26 + TSS region transcription start site region 30479
Tssr30480 3 94974728 to 94974753 25 + TSS region transcription start site region 30480
Pi4kb 3 94974731 to 95006843 32112 + protein coding gene phosphatidylinositol 4-kinase beta
Tssr30481 3 94974757 to 94974768 11 + TSS region transcription start site region 30481
Tssr30482 3 94974911 to 94974964 53 + TSS region transcription start site region 30482
Tssr30483 3 94974968 to 94974990 22 + TSS region transcription start site region 30483
Tssr34410 3 94979894 to 94979900 6 - TSS region transcription start site region 34410
D3Umi7 3 94983983 to 94984798 815 DNA segment DNA segment, Chr 3, University of Michigan 7
Tssr966 3 94984836 to 94984850 14 + TSS region transcription start site region 966
A730011C13Rik 3 94994410 to 94997350 2940 - antisense lncRNA gene RIKEN cDNA A730011C13 gene
Tssr34411 3 94997097 to 94997120 23 - TSS region transcription start site region 34411
Gm15265 3 94998800 to 95004869 6069 - antisense lncRNA gene predicted gene 15265
Tssr34412 3 95003410 to 95003414 4 - TSS region transcription start site region 34412
Mir7013 3 95004168 to 95004239 71 + miRNA gene microRNA 7013
Tssr30484 3 95004956 to 95005002 46 + TSS region transcription start site region 30484
Tssr30485 3 95006589 to 95006602 13 + TSS region transcription start site region 30485
Zfp687 3 95006590 to 95015448 8858 - protein coding gene zinc finger protein 687
Cpgi13494 3 95014415 to 95016783 2368 CpG island CpG island 13494
Tssr34413 3 95015214 to 95015246 32 - TSS region transcription start site region 34413
Tssr34414 3 95015416 to 95015462 46 - TSS region transcription start site region 34414
4930481B07Rik 3 95015625 to 95020138 4513 + lncRNA gene RIKEN cDNA 4930481B07 gene
Tssr30486 3 95015721 to 95015751 30 + TSS region transcription start site region 30486
Tssr30487 3 95015760 to 95015785 25 + TSS region transcription start site region 30487
Tssr34415 3 95025346 to 95025367 21 - TSS region transcription start site region 34415
D3Mit76 3 95028904 to 95029032 128 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 76
Psmd4 3 95032694 to 95042614 9920 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Tssr30488 3 95032784 to 95032791 7 + TSS region transcription start site region 30488
Cpgi13495 3 95042286 to 95042734 448 CpG island CpG island 13495
1700123N01Rik 3 95042324 to 95042928 604 unclassified gene RIKEN cDNA 1700123N01 gene
Tssr34416 3 95042542 to 95042579 37 - TSS region transcription start site region 34416
Pip5k1a 3 95058530 to 95106930 48400 - protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
Gm24920 3 95090625 to 95090709 84 - snoRNA gene predicted gene, 24920
Gm40095 3 95097043 to 95097371 328 - pseudogene predicted gene, 40095
Gm22301 3 95099500 to 95099606 106 + snRNA gene predicted gene, 22301
D3Umi8 3 95100039 to 95100161 122 DNA segment DNA segment, Chr 3, University of Michigan 8
Cpgi13496 3 95106252 to 95107111 859 CpG island CpG island 13496
Tssr34417 3 95106818 to 95106897 79 - TSS region transcription start site region 34417
Tssr34418 3 95106907 to 95106922 15 - TSS region transcription start site region 34418
Cpgi13497 3 95110869 to 95111618 749 CpG island CpG island 13497
Tssr30489 3 95111013 to 95111087 74 + TSS region transcription start site region 30489
Vps72 3 95111042 to 95123051 12009 + protein coding gene vacuolar protein sorting 72
D3Umi9 3 95122288 to 95122641 353 DNA segment DNA segment, Chr 3, University of Michigan 9
Tssr30490 3 95122520 to 95122532 12 + TSS region transcription start site region 30490
Tssr967 3 95124437 to 95124449 12 + TSS region transcription start site region 967
Tssr30491 3 95124451 to 95124465 14 + TSS region transcription start site region 30491
Tmod4 3 95124476 to 95129209 4733 + protein coding gene tropomodulin 4
Tssr30492 3 95124482 to 95124560 78 + TSS region transcription start site region 30492
Tssr30493 3 95126189 to 95126199 10 + TSS region transcription start site region 30493
Tssr30494 3 95126206 to 95126213 7 + TSS region transcription start site region 30494
Tssr30495 3 95126218 to 95126227 9 + TSS region transcription start site region 30495
Tssr30496 3 95126240 to 95126249 9 + TSS region transcription start site region 30496
Tssr30497 3 95127425 to 95127460 35 + TSS region transcription start site region 30497
Scnm1 3 95129719 to 95134045 4326 - protein coding gene sodium channel modifier 1
Tssr30498 3 95131435 to 95131440 5 + TSS region transcription start site region 30498
D3Umi10 3 95133727 to 95134239 512 DNA segment DNA segment, Chr 3, University of Michigan 10
Cpgi13498 3 95133807 to 95134055 248 CpG island CpG island 13498
Tssr34419 3 95133898 to 95133913 15 - TSS region transcription start site region 34419
Tssr34420 3 95133936 to 95133988 52 - TSS region transcription start site region 34420
Tssr34421 3 95133989 to 95134017 28 - TSS region transcription start site region 34421
Lysmd1 3 95134088 to 95139518 5430 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 1
Tssr968 3 95137923 to 95137946 23 + TSS region transcription start site region 968
Mir8099-1 3 95139060 to 95139186 126 - miRNA gene microRNA 8099-1
Tnfaip8l2 3 95139521 to 95142360 2839 - protein coding gene tumor necrosis factor, alpha-induced protein 8-like 2
Tssr34422 3 95139842 to 95139865 23 - TSS region transcription start site region 34422
Cpgi13499 3 95140051 to 95140637 586 CpG island CpG island 13499
Tssr34423 3 95140083 to 95140121 38 - TSS region transcription start site region 34423
Tssr34424 3 95142346 to 95142362 16 - TSS region transcription start site region 34424
Tssr34425 3 95142363 to 95142374 11 - TSS region transcription start site region 34425
Gm9169 3 95144371 to 95144906 535 + pseudogene predicted gene 9169
Cpgi13500 3 95160057 to 95161602 1545 CpG island CpG island 13500
Tssr30499 3 95160449 to 95160505 56 + TSS region transcription start site region 30499
Sema6c 3 95160457 to 95174024 13567 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Tssr30500 3 95160969 to 95160973 4 + TSS region transcription start site region 30500
Tssr30501 3 95164265 to 95164281 16 + TSS region transcription start site region 30501
Tssr30502 3 95164309 to 95164333 24 + TSS region transcription start site region 30502
Cpgi13501 3 95172037 to 95173926 1889 CpG island CpG island 13501
Cpgi13502 3 95174203 to 95174483 280 CpG island CpG island 13502
Gabpb2 3 95181766 to 95217916 36150 - protein coding gene GA repeat binding protein, beta 2
Tssr34426 3 95190762 to 95190767 5 - TSS region transcription start site region 34426
Tssr34427 3 95193736 to 95193738 2 - TSS region transcription start site region 34427