Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:94432191-94572927

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tdrkh 3 94413273 to 94434668 21395 + protein coding gene tudor and KH domain containing protein
Oaz3 3 94433387 to 94436651 3264 - protein coding gene ornithine decarboxylase antizyme 3
D3Umi3 3 94435736 to 94436175 439 DNA segment DNA segment, Chr 3, University of Michigan 3
Tssr34385 3 94435888 to 94435893 5 - TSS region transcription start site region 34385
Tssr34386 3 94436079 to 94436090 11 - TSS region transcription start site region 34386
Tssr34387 3 94436574 to 94436592 18 - TSS region transcription start site region 34387
Cpgi13482 3 94443125 to 94443920 795 CpG island CpG island 13482
Mrpl9 3 94443154 to 94448708 5554 + protein coding gene mitochondrial ribosomal protein L9
Tssr30449 3 94443286 to 94443295 9 + TSS region transcription start site region 30449
Tssr30450 3 94443315 to 94443345 30 + TSS region transcription start site region 30450
Gm30023 3 94453169 to 94454057 888 + pseudogene predicted gene, 30023
Riiad1 3 94464984 to 94480290 15306 - protein coding gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
Cpgi13483 3 94472700 to 94472952 252 CpG island CpG island 13483
Tssr34388 3 94472861 to 94472866 5 - TSS region transcription start site region 34388
Tssr34389 3 94472869 to 94472887 18 - TSS region transcription start site region 34389
Tssr34390 3 94472892 to 94472930 38 - TSS region transcription start site region 34390
Celf3 3 94478295 to 94492198 13903 + protein coding gene CUGBP, Elav-like family member 3
Tssr30451 3 94478322 to 94478343 21 + TSS region transcription start site region 30451
Tssr30452 3 94478354 to 94478366 12 + TSS region transcription start site region 30452
Tssr30453 3 94479128 to 94479149 21 + TSS region transcription start site region 30453
Gm46813 3 94483342 to 94483987 645 - lncRNA gene predicted gene, 46813
Cpgi13484 3 94483944 to 94484366 422 CpG island CpG island 13484
Tssr34391 3 94484215 to 94484228 13 - TSS region transcription start site region 34391
Tssr30454 3 94484324 to 94484335 11 + TSS region transcription start site region 30454
Tssr30455 3 94484338 to 94484351 13 + TSS region transcription start site region 30455
Tssr30456 3 94484369 to 94484408 39 + TSS region transcription start site region 30456
D3Umi4 3 94485074 to 94485523 449 DNA segment DNA segment, Chr 3, University of Michigan 4
Tssr30457 3 94486304 to 94486305 1 + TSS region transcription start site region 30457
Tssr30458 3 94486332 to 94486333 1 + TSS region transcription start site region 30458
Tssr30459 3 94487690 to 94487706 16 + TSS region transcription start site region 30459
Tssr30460 3 94487733 to 94487751 18 + TSS region transcription start site region 30460
Tssr30461 3 94492082 to 94492100 18 + TSS region transcription start site region 30461
Snx27 3 94497544 to 94582716 85172 - protein coding gene sorting nexin family member 27
Tssr34392 3 94501271 to 94501281 10 - TSS region transcription start site region 34392
D13Mgi25 3 94502191 to 94502927 736 DNA segment DNA Segment, Chr 13, Mouse Genome Informatics 25
Gm43773 3 94533805 to 94535966 2161 - sense intronic lncRNA gene predicted gene 43773
Gm43774 3 94536611 to 94537488 877 - sense intronic lncRNA gene predicted gene 43774
Tssr34393 3 94572606 to 94572632 26 - TSS region transcription start site region 34393