Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:94383805-94685966

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rorc 3 94372794 to 94398276 25482 + protein coding gene RAR-related orphan receptor gamma
Tssr30439 3 94385679 to 94385682 3 + TSS region transcription start site region 30439
Tssr30440 3 94386917 to 94386928 11 + TSS region transcription start site region 30440
Tssr30441 3 94386955 to 94386974 19 + TSS region transcription start site region 30441
Tssr30442 3 94387031 to 94387051 20 + TSS region transcription start site region 30442
Tssr34382 3 94388152 to 94388164 12 - TSS region transcription start site region 34382
Tssr30443 3 94388253 to 94388290 37 + TSS region transcription start site region 30443
Tssr30444 3 94388294 to 94388301 7 + TSS region transcription start site region 30444
Tssr30445 3 94392741 to 94392748 7 + TSS region transcription start site region 30445
Gm43401 3 94392971 to 94402848 9877 - antisense lncRNA gene predicted gene 43401
Tssr30446 3 94398535 to 94398538 3 + TSS region transcription start site region 30446
Cpgi13480 3 94399118 to 94399298 180 CpG island CpG island 13480
Lingo4 3 94399219 to 94404501 5282 + protein coding gene leucine rich repeat and Ig domain containing 4
Tssr30447 3 94399272 to 94399333 61 + TSS region transcription start site region 30447
1700040D17Rik 3 94409395 to 94412919 3524 - lincRNA gene RIKEN cDNA 1700040D17 gene
Cpgi13481 3 94412459 to 94413591 1132 CpG island CpG island 13481
Tssr34383 3 94412887 to 94412890 3 - TSS region transcription start site region 34383
Tssr30448 3 94413244 to 94413296 52 + TSS region transcription start site region 30448
Tdrkh 3 94413273 to 94434668 21395 + protein coding gene tudor and KH domain containing protein
Gm42463 3 94413401 to 94418286 4885 + sense intronic lncRNA gene predicted gene 42463
Tssr34384 3 94417954 to 94417956 2 - TSS region transcription start site region 34384
Gm42464 3 94421661 to 94422434 773 - pseudogene predicted gene 42464
Oaz3 3 94433387 to 94436651 3264 - protein coding gene ornithine decarboxylase antizyme 3
D3Umi3 3 94435736 to 94436175 439 DNA segment DNA segment, Chr 3, University of Michigan 3
Tssr34385 3 94435888 to 94435893 5 - TSS region transcription start site region 34385
Tssr34386 3 94436079 to 94436090 11 - TSS region transcription start site region 34386
Tssr34387 3 94436574 to 94436592 18 - TSS region transcription start site region 34387
Cpgi13482 3 94443125 to 94443920 795 CpG island CpG island 13482
Mrpl9 3 94443154 to 94448708 5554 + protein coding gene mitochondrial ribosomal protein L9
Tssr30449 3 94443286 to 94443295 9 + TSS region transcription start site region 30449
Tssr30450 3 94443315 to 94443345 30 + TSS region transcription start site region 30450
Gm30023 3 94453169 to 94454057 888 + pseudogene predicted gene, 30023
Riiad1 3 94464984 to 94480290 15306 - protein coding gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
Cpgi13483 3 94472700 to 94472952 252 CpG island CpG island 13483
Tssr34388 3 94472861 to 94472866 5 - TSS region transcription start site region 34388
Tssr34389 3 94472869 to 94472887 18 - TSS region transcription start site region 34389
Tssr34390 3 94472892 to 94472930 38 - TSS region transcription start site region 34390
Celf3 3 94478295 to 94492198 13903 + protein coding gene CUGBP, Elav-like family member 3
Tssr30451 3 94478322 to 94478343 21 + TSS region transcription start site region 30451
Tssr30452 3 94478354 to 94478366 12 + TSS region transcription start site region 30452
Tssr30453 3 94479128 to 94479149 21 + TSS region transcription start site region 30453
Gm46813 3 94483342 to 94483987 645 - lncRNA gene predicted gene, 46813
Cpgi13484 3 94483944 to 94484366 422 CpG island CpG island 13484
Tssr34391 3 94484215 to 94484228 13 - TSS region transcription start site region 34391
Tssr30454 3 94484324 to 94484335 11 + TSS region transcription start site region 30454
Tssr30455 3 94484338 to 94484351 13 + TSS region transcription start site region 30455
Tssr30456 3 94484369 to 94484408 39 + TSS region transcription start site region 30456
D3Umi4 3 94485074 to 94485523 449 DNA segment DNA segment, Chr 3, University of Michigan 4
Tssr30457 3 94486304 to 94486305 1 + TSS region transcription start site region 30457
Tssr30458 3 94486332 to 94486333 1 + TSS region transcription start site region 30458
Tssr30459 3 94487690 to 94487706 16 + TSS region transcription start site region 30459
Tssr30460 3 94487733 to 94487751 18 + TSS region transcription start site region 30460
Tssr30461 3 94492082 to 94492100 18 + TSS region transcription start site region 30461
Snx27 3 94497544 to 94582716 85172 - protein coding gene sorting nexin family member 27
Tssr34392 3 94501271 to 94501281 10 - TSS region transcription start site region 34392
D13Mgi25 3 94502191 to 94502927 736 DNA segment DNA Segment, Chr 13, Mouse Genome Informatics 25
Gm43773 3 94533805 to 94535966 2161 - sense intronic lncRNA gene predicted gene 43773
Gm43774 3 94536611 to 94537488 877 - sense intronic lncRNA gene predicted gene 43774
Tssr34393 3 94572606 to 94572632 26 - TSS region transcription start site region 34393
Gm43768 3 94575777 to 94577034 1257 - sense intronic lncRNA gene predicted gene 43768
Tssr34394 3 94580127 to 94580139 12 - TSS region transcription start site region 34394
Cpgi13485 3 94581845 to 94582927 1082 CpG island CpG island 13485
Tssr34395 3 94582548 to 94582573 25 - TSS region transcription start site region 34395
Tssr34396 3 94582664 to 94582676 12 - TSS region transcription start site region 34396
Tssr34397 3 94582687 to 94582708 21 - TSS region transcription start site region 34397
Tssr34398 3 94582720 to 94582741 21 - TSS region transcription start site region 34398
Tssr34399 3 94582759 to 94582770 11 - TSS region transcription start site region 34399
Tssr34400 3 94588049 to 94588079 30 - TSS region transcription start site region 34400
Gm15235 3 94589466 to 94589659 193 + pseudogene predicted gene 15235
Tssr30462 3 94591313 to 94591320 7 + TSS region transcription start site region 30462
Rpl31-ps11 3 94604408 to 94604784 376 - pseudogene ribosomal protein L31, pseudogene 11
Tuft1 3 94612757 to 94658872 46115 - protein coding gene tuftelin 1
Gm10972 3 94643112 to 94643600 488 + protein coding gene predicted gene 10972
Cpgi13486 3 94658149 to 94658381 232 CpG island CpG island 13486
Tssr34401 3 94658843 to 94658878 35 - TSS region transcription start site region 34401
Gm15234 3 94658961 to 94660115 1154 + lincRNA gene predicted gene 15234
BC021767 3 94660589 to 94667152 6563 - pseudogene cDNA sequence BC021767
Cpgi13487 3 94669925 to 94670085 160 CpG island CpG island 13487
Gm46814 3 94677212 to 94684670 7458 + lncRNA gene predicted gene, 46814
Tssr34402 3 94680858 to 94680873 15 - TSS region transcription start site region 34402
Tssr30463 3 94681059 to 94681066 7 + TSS region transcription start site region 30463