Gene symbol |
Chromo- some |
Coordinates (bp, mm10) |
Size (bp) |
Strand |
Feature Type |
Gene name |
---|---|---|---|---|---|---|
Rorc | 3 | 25482 | + | protein coding gene | RAR-related orphan receptor gamma | |
Tssr30439 | 3 | 3 | + | TSS region | transcription start site region 30439 | |
Tssr30440 | 3 | 11 | + | TSS region | transcription start site region 30440 | |
Tssr30441 | 3 | 19 | + | TSS region | transcription start site region 30441 | |
Tssr30442 | 3 | 20 | + | TSS region | transcription start site region 30442 | |
Tssr34382 | 3 | 12 | - | TSS region | transcription start site region 34382 | |
Tssr30443 | 3 | 37 | + | TSS region | transcription start site region 30443 | |
Tssr30444 | 3 | 7 | + | TSS region | transcription start site region 30444 | |
Tssr30445 | 3 | 7 | + | TSS region | transcription start site region 30445 | |
Gm43401 | 3 | 9877 | - | antisense lncRNA gene | predicted gene 43401 | |
Tssr30446 | 3 | 3 | + | TSS region | transcription start site region 30446 | |
Cpgi13480 | 3 | 180 | CpG island | CpG island 13480 | ||
Lingo4 | 3 | 5282 | + | protein coding gene | leucine rich repeat and Ig domain containing 4 | |
Tssr30447 | 3 | 61 | + | TSS region | transcription start site region 30447 | |
1700040D17Rik | 3 | 3524 | - | lincRNA gene | RIKEN cDNA 1700040D17 gene | |
Cpgi13481 | 3 | 1132 | CpG island | CpG island 13481 | ||
Tssr34383 | 3 | 3 | - | TSS region | transcription start site region 34383 | |
Tssr30448 | 3 | 52 | + | TSS region | transcription start site region 30448 | |
Tdrkh | 3 | 21395 | + | protein coding gene | tudor and KH domain containing protein | |
Gm42463 | 3 | 4885 | + | sense intronic lncRNA gene | predicted gene 42463 | |
Tssr34384 | 3 | 2 | - | TSS region | transcription start site region 34384 | |
Gm42464 | 3 | 773 | - | pseudogene | predicted gene 42464 | |
Oaz3 | 3 | 3264 | - | protein coding gene | ornithine decarboxylase antizyme 3 | |
D3Umi3 | 3 | 439 | DNA segment | DNA segment, Chr 3, University of Michigan 3 | ||
Tssr34385 | 3 | 5 | - | TSS region | transcription start site region 34385 | |
Tssr34386 | 3 | 11 | - | TSS region | transcription start site region 34386 | |
Tssr34387 | 3 | 18 | - | TSS region | transcription start site region 34387 | |
Cpgi13482 | 3 | 795 | CpG island | CpG island 13482 | ||
Mrpl9 | 3 | 5554 | + | protein coding gene | mitochondrial ribosomal protein L9 | |
Tssr30449 | 3 | 9 | + | TSS region | transcription start site region 30449 | |
Tssr30450 | 3 | 30 | + | TSS region | transcription start site region 30450 | |
Gm30023 | 3 | 888 | + | pseudogene | predicted gene, 30023 | |
Riiad1 | 3 | 15306 | - | protein coding gene | regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 | |
Cpgi13483 | 3 | 252 | CpG island | CpG island 13483 | ||
Tssr34388 | 3 | 5 | - | TSS region | transcription start site region 34388 | |
Tssr34389 | 3 | 18 | - | TSS region | transcription start site region 34389 | |
Tssr34390 | 3 | 38 | - | TSS region | transcription start site region 34390 | |
Celf3 | 3 | 13903 | + | protein coding gene | CUGBP, Elav-like family member 3 | |
Tssr30451 | 3 | 21 | + | TSS region | transcription start site region 30451 | |
Tssr30452 | 3 | 12 | + | TSS region | transcription start site region 30452 | |
Tssr30453 | 3 | 21 | + | TSS region | transcription start site region 30453 | |
Gm46813 | 3 | 645 | - | lncRNA gene | predicted gene, 46813 | |
Cpgi13484 | 3 | 422 | CpG island | CpG island 13484 | ||
Tssr34391 | 3 | 13 | - | TSS region | transcription start site region 34391 | |
Tssr30454 | 3 | 11 | + | TSS region | transcription start site region 30454 | |
Tssr30455 | 3 | 13 | + | TSS region | transcription start site region 30455 | |
Tssr30456 | 3 | 39 | + | TSS region | transcription start site region 30456 | |
D3Umi4 | 3 | 449 | DNA segment | DNA segment, Chr 3, University of Michigan 4 | ||
Tssr30457 | 3 | 1 | + | TSS region | transcription start site region 30457 | |
Tssr30458 | 3 | 1 | + | TSS region | transcription start site region 30458 | |
Tssr30459 | 3 | 16 | + | TSS region | transcription start site region 30459 | |
Tssr30460 | 3 | 18 | + | TSS region | transcription start site region 30460 | |
Tssr30461 | 3 | 18 | + | TSS region | transcription start site region 30461 | |
Snx27 | 3 | 85172 | - | protein coding gene | sorting nexin family member 27 | |
Tssr34392 | 3 | 10 | - | TSS region | transcription start site region 34392 | |
D13Mgi25 | 3 | 736 | DNA segment | DNA Segment, Chr 13, Mouse Genome Informatics 25 | ||
Gm43773 | 3 | 2161 | - | sense intronic lncRNA gene | predicted gene 43773 | |
Gm43774 | 3 | 877 | - | sense intronic lncRNA gene | predicted gene 43774 | |
Tssr34393 | 3 | 26 | - | TSS region | transcription start site region 34393 | |
Gm43768 | 3 | 1257 | - | sense intronic lncRNA gene | predicted gene 43768 | |
Tssr34394 | 3 | 12 | - | TSS region | transcription start site region 34394 | |
Cpgi13485 | 3 | 1082 | CpG island | CpG island 13485 | ||
Tssr34395 | 3 | 25 | - | TSS region | transcription start site region 34395 | |
Tssr34396 | 3 | 12 | - | TSS region | transcription start site region 34396 | |
Tssr34397 | 3 | 21 | - | TSS region | transcription start site region 34397 | |
Tssr34398 | 3 | 21 | - | TSS region | transcription start site region 34398 | |
Tssr34399 | 3 | 11 | - | TSS region | transcription start site region 34399 | |
Tssr34400 | 3 | 30 | - | TSS region | transcription start site region 34400 | |
Gm15235 | 3 | 193 | + | pseudogene | predicted gene 15235 | |
Tssr30462 | 3 | 7 | + | TSS region | transcription start site region 30462 | |
Rpl31-ps11 | 3 | 376 | - | pseudogene | ribosomal protein L31, pseudogene 11 | |
Tuft1 | 3 | 46115 | - | protein coding gene | tuftelin 1 | |
Gm10972 | 3 | 488 | + | protein coding gene | predicted gene 10972 | |
Cpgi13486 | 3 | 232 | CpG island | CpG island 13486 | ||
Tssr34401 | 3 | 35 | - | TSS region | transcription start site region 34401 | |
Gm15234 | 3 | 1154 | + | lincRNA gene | predicted gene 15234 | |
BC021767 | 3 | 6563 | - | pseudogene | cDNA sequence BC021767 | |
Cpgi13487 | 3 | 160 | CpG island | CpG island 13487 | ||
Gm46814 | 3 | 7458 | + | lncRNA gene | predicted gene, 46814 | |
Tssr34402 | 3 | 15 | - | TSS region | transcription start site region 34402 | |
Tssr30463 | 3 | 7 | + | TSS region | transcription start site region 30463 | |
Tssr30464 | 3 | 6 | + | TSS region | transcription start site region 30464 | |
Selenbp2 | 3 | 10833 | + | protein coding gene | selenium binding protein 2 | |
Tssr30465 | 3 | 3 | + | TSS region | transcription start site region 30465 | |
Gm15264 | 3 | 38093 | - | pseudogene | predicted gene 15264 | |
Gm43711 | 3 | 372 | + | pseudogene | predicted gene 43711 | |
Tssr34403 | 3 | 5 | - | TSS region | transcription start site region 34403 | |
Cgn | 3 | 26423 | - | protein coding gene | cingulin | |
D3Umi5 | 3 | 219 | DNA segment | DNA segment, Chr 3, University of Michigan 5 | ||
Tssr34404 | 3 | 10 | - | TSS region | transcription start site region 34404 | |
Cpgi13488 | 3 | 908 | CpG island | CpG island 13488 | ||
Tssr34405 | 3 | 36 | - | TSS region | transcription start site region 34405 | |
Tssr34406 | 3 | 21 | - | TSS region | transcription start site region 34406 | |
Tssr30466 | 3 | 16 | + | TSS region | transcription start site region 30466 | |
Tssr30467 | 3 | 11 | + | TSS region | transcription start site region 30467 | |
Gm40094 | 3 | 1461 | + | lncRNA gene | predicted gene, 40094 | |
Cpgi13489 | 3 | 489 | CpG island | CpG island 13489 | ||
Gm15263 | 3 | 553 | + | pseudogene | predicted gene 15263 | |
Cpgi13490 | 3 | 1154 | CpG island | CpG island 13490 | ||
Tssr30468 | 3 | 39 | + | TSS region | transcription start site region 30468 | |
Tssr30469 | 3 | 30 | + | TSS region | transcription start site region 30469 | |
Tssr30470 | 3 | 31 | + | TSS region | transcription start site region 30470 | |
Pogz | 3 | 44759 | + | protein coding gene | pogo transposable element with ZNF domain | |
Tssr30471 | 3 | 16 | + | TSS region | transcription start site region 30471 | |
Tssr30472 | 3 | 11 | + | TSS region | transcription start site region 30472 | |
Tssr30473 | 3 | 21 | + | TSS region | transcription start site region 30473 | |
Tssr34407 | 3 | 6 | - | TSS region | transcription start site region 34407 | |
Tssr30474 | 3 | 12 | + | TSS region | transcription start site region 30474 | |
Psmb4 | 3 | 2634 | - | protein coding gene | proteasome (prosome, macropain) subunit, beta type 4 | |
Cpgi13491 | 3 | 760 | CpG island | CpG island 13491 | ||
Tssr34408 | 3 | 22 | - | TSS region | transcription start site region 34408 | |
Tssr34409 | 3 | 11 | - | TSS region | transcription start site region 34409 | |
Tssr30475 | 3 | 32 | + | TSS region | transcription start site region 30475 | |
D3Mit140 | 3 | 121 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 140 | ||
Gm36237 | 3 | 5038 | + | lncRNA gene | predicted gene, 36237 | |
Gm26279 | 3 | 101 | - | snRNA gene | predicted gene, 26279 | |
Tssr30476 | 3 | 32 | + | TSS region | transcription start site region 30476 | |
Selenbp1 | 3 | 11675 | + | protein coding gene | selenium binding protein 1 | |
Tssr30477 | 3 | 7 | + | TSS region | transcription start site region 30477 | |
D3Umi6 | 3 | 237 | DNA segment | DNA segment, Chr 3, University of Michigan 6 | ||
4930532J02Rik | 3 | 679 | unclassified gene | RIKEN cDNA 4930532J02 gene | ||
Cpgi13492 | 3 | 576 | CpG island | CpG island 13492 | ||
Rfx5 | 3 | 7486 | + | protein coding gene | regulatory factor X, 5 (influences HLA class II expression) | |
Tssr30478 | 3 | 101 | + | TSS region | transcription start site region 30478 | |
B230398E01Rik | 3 | 3014 | - | antisense lncRNA gene | RIKEN cDNA B230398E01 gene | |
Cpgi13493 | 3 | 806 | CpG island | CpG island 13493 | ||
Tssr30479 | 3 | 26 | + | TSS region | transcription start site region 30479 | |
Tssr30480 | 3 | 25 | + | TSS region | transcription start site region 30480 | |
Pi4kb | 3 | 32112 | + | protein coding gene | phosphatidylinositol 4-kinase beta | |
Tssr30481 | 3 | 11 | + | TSS region | transcription start site region 30481 | |
Tssr30482 | 3 | 53 | + | TSS region | transcription start site region 30482 | |
Tssr30483 | 3 | 22 | + | TSS region | transcription start site region 30483 | |
Tssr34410 | 3 | 6 | - | TSS region | transcription start site region 34410 | |
D3Umi7 | 3 | 815 | DNA segment | DNA segment, Chr 3, University of Michigan 7 | ||
Tssr966 | 3 | 14 | + | TSS region | transcription start site region 966 | |
A730011C13Rik | 3 | 2940 | - | antisense lncRNA gene | RIKEN cDNA A730011C13 gene | |
Tssr34411 | 3 | 23 | - | TSS region | transcription start site region 34411 | |
Gm15265 | 3 | 6069 | - | antisense lncRNA gene | predicted gene 15265 | |
Tssr34412 | 3 | 4 | - | TSS region | transcription start site region 34412 | |
Mir7013 | 3 | 71 | + | miRNA gene | microRNA 7013 | |
Tssr30484 | 3 | 46 | + | TSS region | transcription start site region 30484 | |
Tssr30485 | 3 | 13 | + | TSS region | transcription start site region 30485 | |
Zfp687 | 3 | 8858 | - | protein coding gene | zinc finger protein 687 | |
Cpgi13494 | 3 | 2368 | CpG island | CpG island 13494 | ||
Tssr34413 | 3 | 32 | - | TSS region | transcription start site region 34413 | |
Tssr34414 | 3 | 46 | - | TSS region | transcription start site region 34414 | |
4930481B07Rik | 3 | 4513 | + | lncRNA gene | RIKEN cDNA 4930481B07 gene | |
Tssr30486 | 3 | 30 | + | TSS region | transcription start site region 30486 | |
Tssr30487 | 3 | 25 | + | TSS region | transcription start site region 30487 | |
Tssr34415 | 3 | 21 | - | TSS region | transcription start site region 34415 | |
D3Mit76 | 3 | 128 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 76 | ||
Psmd4 | 3 | 9920 | - | protein coding gene | proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 | |
Tssr30488 | 3 | 7 | + | TSS region | transcription start site region 30488 | |
Cpgi13495 | 3 | 448 | CpG island | CpG island 13495 | ||
1700123N01Rik | 3 | 604 | unclassified gene | RIKEN cDNA 1700123N01 gene | ||
Tssr34416 | 3 | 37 | - | TSS region | transcription start site region 34416 | |
Pip5k1a | 3 | 48400 | - | protein coding gene | phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha | |
Gm24920 | 3 | 84 | - | snoRNA gene | predicted gene, 24920 | |
Gm40095 | 3 | 328 | - | pseudogene | predicted gene, 40095 | |
Gm22301 | 3 | 106 | + | snRNA gene | predicted gene, 22301 | |
D3Umi8 | 3 | 122 | DNA segment | DNA segment, Chr 3, University of Michigan 8 | ||
Cpgi13496 | 3 | 859 | CpG island | CpG island 13496 | ||
Tssr34417 | 3 | 79 | - | TSS region | transcription start site region 34417 | |
Tssr34418 | 3 | 15 | - | TSS region | transcription start site region 34418 | |
Cpgi13497 | 3 | 749 | CpG island | CpG island 13497 | ||
Tssr30489 | 3 | 74 | + | TSS region | transcription start site region 30489 | |
Vps72 | 3 | 12009 | + | protein coding gene | vacuolar protein sorting 72 | |
D3Umi9 | 3 | 353 | DNA segment | DNA segment, Chr 3, University of Michigan 9 | ||
Tssr30490 | 3 | 12 | + | TSS region | transcription start site region 30490 | |
Tssr967 | 3 | 12 | + | TSS region | transcription start site region 967 | |
Tssr30491 | 3 | 14 | + | TSS region | transcription start site region 30491 | |
Tmod4 | 3 | 4733 | + | protein coding gene | tropomodulin 4 | |
Tssr30492 | 3 | 78 | + | TSS region | transcription start site region 30492 | |
Tssr30493 | 3 | 10 | + | TSS region | transcription start site region 30493 | |
Tssr30494 | 3 | 7 | + | TSS region | transcription start site region 30494 | |
Tssr30495 | 3 | 9 | + | TSS region | transcription start site region 30495 | |
Tssr30496 | 3 | 9 | + | TSS region | transcription start site region 30496 | |
Tssr30497 | 3 | 35 | + | TSS region | transcription start site region 30497 | |
Scnm1 | 3 | 4326 | - | protein coding gene | sodium channel modifier 1 | |
Tssr30498 | 3 | 5 | + | TSS region | transcription start site region 30498 | |
D3Umi10 | 3 | 512 | DNA segment | DNA segment, Chr 3, University of Michigan 10 | ||
Cpgi13498 | 3 | 248 | CpG island | CpG island 13498 | ||
Tssr34419 | 3 | 15 | - | TSS region | transcription start site region 34419 | |
Tssr34420 | 3 | 52 | - | TSS region | transcription start site region 34420 | |
Tssr34421 | 3 | 28 | - | TSS region | transcription start site region 34421 | |
Lysmd1 | 3 | 5430 | + | protein coding gene | LysM, putative peptidoglycan-binding, domain containing 1 | |
Tssr968 | 3 | 23 | + | TSS region | transcription start site region 968 | |
Mir8099-1 | 3 | 126 | - | miRNA gene | microRNA 8099-1 | |
Tnfaip8l2 | 3 | 2839 | - | protein coding gene | tumor necrosis factor, alpha-induced protein 8-like 2 | |
Tssr34422 | 3 | 23 | - | TSS region | transcription start site region 34422 | |
Cpgi13499 | 3 | 586 | CpG island | CpG island 13499 | ||
Tssr34423 | 3 | 38 | - | TSS region | transcription start site region 34423 | |
Tssr34424 | 3 | 16 | - | TSS region | transcription start site region 34424 | |
Tssr34425 | 3 | 11 | - | TSS region | transcription start site region 34425 | |
Gm9169 | 3 | 535 | + | pseudogene | predicted gene 9169 | |
Cpgi13500 | 3 | 1545 | CpG island | CpG island 13500 | ||
Tssr30499 | 3 | 56 | + | TSS region | transcription start site region 30499 | |
Sema6c | 3 | 13567 | + | protein coding gene | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C | |
Tssr30500 | 3 | 4 | + | TSS region | transcription start site region 30500 | |
Tssr30501 | 3 | 16 | + | TSS region | transcription start site region 30501 |