Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:94362326-96102349

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671 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C2cd4d 3 94362444 to 94364567 2123 + protein coding gene C2 calcium-dependent domain containing 4D
Cpgi13479 3 94363256 to 94364516 1260 CpG island CpG island 13479
Gm38411 3 94365535 to 94371023 5488 - antisense lncRNA gene predicted gene, 38411
Tssr34377 3 94369633 to 94369637 4 - TSS region transcription start site region 34377
Rorc 3 94372794 to 94398276 25482 + protein coding gene RAR-related orphan receptor gamma
Tssr30431 3 94372811 to 94372872 61 + TSS region transcription start site region 30431
Tssr30432 3 94372886 to 94372887 1 + TSS region transcription start site region 30432
Tssr34378 3 94375237 to 94375241 4 - TSS region transcription start site region 34378
Tssr34379 3 94377236 to 94377250 14 - TSS region transcription start site region 34379
Tssr34380 3 94377254 to 94377281 27 - TSS region transcription start site region 34380
Tssr34381 3 94377284 to 94377290 6 - TSS region transcription start site region 34381
Tssr30433 3 94377409 to 94377423 14 + TSS region transcription start site region 30433
Tssr30434 3 94377433 to 94377451 18 + TSS region transcription start site region 30434
Tssr30435 3 94377454 to 94377481 27 + TSS region transcription start site region 30435
Tssr30436 3 94377486 to 94377497 11 + TSS region transcription start site region 30436
Tssr30437 3 94377505 to 94377527 22 + TSS region transcription start site region 30437
Tssr30438 3 94377539 to 94377550 11 + TSS region transcription start site region 30438
Tssr30439 3 94385679 to 94385682 3 + TSS region transcription start site region 30439
Tssr30440 3 94386917 to 94386928 11 + TSS region transcription start site region 30440
Tssr30441 3 94386955 to 94386974 19 + TSS region transcription start site region 30441
Tssr30442 3 94387031 to 94387051 20 + TSS region transcription start site region 30442
Tssr34382 3 94388152 to 94388164 12 - TSS region transcription start site region 34382
Tssr30443 3 94388253 to 94388290 37 + TSS region transcription start site region 30443
Tssr30444 3 94388294 to 94388301 7 + TSS region transcription start site region 30444
Tssr30445 3 94392741 to 94392748 7 + TSS region transcription start site region 30445
Gm43401 3 94392971 to 94402848 9877 - antisense lncRNA gene predicted gene 43401
Tssr30446 3 94398535 to 94398538 3 + TSS region transcription start site region 30446
Cpgi13480 3 94399118 to 94399298 180 CpG island CpG island 13480
Lingo4 3 94399219 to 94404501 5282 + protein coding gene leucine rich repeat and Ig domain containing 4
Tssr30447 3 94399272 to 94399333 61 + TSS region transcription start site region 30447
1700040D17Rik 3 94409395 to 94412919 3524 - lincRNA gene RIKEN cDNA 1700040D17 gene
Cpgi13481 3 94412459 to 94413591 1132 CpG island CpG island 13481
Tssr34383 3 94412887 to 94412890 3 - TSS region transcription start site region 34383
Tssr30448 3 94413244 to 94413296 52 + TSS region transcription start site region 30448
Tdrkh 3 94413273 to 94434668 21395 + protein coding gene tudor and KH domain containing protein
Gm42463 3 94413401 to 94418286 4885 + sense intronic lncRNA gene predicted gene 42463
Tssr34384 3 94417954 to 94417956 2 - TSS region transcription start site region 34384
Gm42464 3 94421661 to 94422434 773 - pseudogene predicted gene 42464
Oaz3 3 94433387 to 94436651 3264 - protein coding gene ornithine decarboxylase antizyme 3
D3Umi3 3 94435736 to 94436175 439 DNA segment DNA segment, Chr 3, University of Michigan 3
Tssr34385 3 94435888 to 94435893 5 - TSS region transcription start site region 34385
Tssr34386 3 94436079 to 94436090 11 - TSS region transcription start site region 34386
Tssr34387 3 94436574 to 94436592 18 - TSS region transcription start site region 34387
Cpgi13482 3 94443125 to 94443920 795 CpG island CpG island 13482
Mrpl9 3 94443154 to 94448708 5554 + protein coding gene mitochondrial ribosomal protein L9
Tssr30449 3 94443286 to 94443295 9 + TSS region transcription start site region 30449
Tssr30450 3 94443315 to 94443345 30 + TSS region transcription start site region 30450
Gm30023 3 94453169 to 94454057 888 + pseudogene predicted gene, 30023
Riiad1 3 94464984 to 94480290 15306 - protein coding gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
Cpgi13483 3 94472700 to 94472952 252 CpG island CpG island 13483
Tssr34388 3 94472861 to 94472866 5 - TSS region transcription start site region 34388
Tssr34389 3 94472869 to 94472887 18 - TSS region transcription start site region 34389
Tssr34390 3 94472892 to 94472930 38 - TSS region transcription start site region 34390
Celf3 3 94478295 to 94492198 13903 + protein coding gene CUGBP, Elav-like family member 3
Tssr30451 3 94478322 to 94478343 21 + TSS region transcription start site region 30451
Tssr30452 3 94478354 to 94478366 12 + TSS region transcription start site region 30452
Tssr30453 3 94479128 to 94479149 21 + TSS region transcription start site region 30453
Gm46813 3 94483342 to 94483987 645 - lncRNA gene predicted gene, 46813
Cpgi13484 3 94483944 to 94484366 422 CpG island CpG island 13484
Tssr34391 3 94484215 to 94484228 13 - TSS region transcription start site region 34391
Tssr30454 3 94484324 to 94484335 11 + TSS region transcription start site region 30454
Tssr30455 3 94484338 to 94484351 13 + TSS region transcription start site region 30455
Tssr30456 3 94484369 to 94484408 39 + TSS region transcription start site region 30456
D3Umi4 3 94485074 to 94485523 449 DNA segment DNA segment, Chr 3, University of Michigan 4
Tssr30457 3 94486304 to 94486305 1 + TSS region transcription start site region 30457
Tssr30458 3 94486332 to 94486333 1 + TSS region transcription start site region 30458
Tssr30459 3 94487690 to 94487706 16 + TSS region transcription start site region 30459
Tssr30460 3 94487733 to 94487751 18 + TSS region transcription start site region 30460
Tssr30461 3 94492082 to 94492100 18 + TSS region transcription start site region 30461
Snx27 3 94497544 to 94582716 85172 - protein coding gene sorting nexin family member 27
Tssr34392 3 94501271 to 94501281 10 - TSS region transcription start site region 34392
D13Mgi25 3 94502191 to 94502927 736 DNA segment DNA Segment, Chr 13, Mouse Genome Informatics 25
Gm43773 3 94533805 to 94535966 2161 - sense intronic lncRNA gene predicted gene 43773
Gm43774 3 94536611 to 94537488 877 - sense intronic lncRNA gene predicted gene 43774
Tssr34393 3 94572606 to 94572632 26 - TSS region transcription start site region 34393
Gm43768 3 94575777 to 94577034 1257 - sense intronic lncRNA gene predicted gene 43768
Tssr34394 3 94580127 to 94580139 12 - TSS region transcription start site region 34394
Cpgi13485 3 94581845 to 94582927 1082 CpG island CpG island 13485
Tssr34395 3 94582548 to 94582573 25 - TSS region transcription start site region 34395
Tssr34396 3 94582664 to 94582676 12 - TSS region transcription start site region 34396
Tssr34397 3 94582687 to 94582708 21 - TSS region transcription start site region 34397
Tssr34398 3 94582720 to 94582741 21 - TSS region transcription start site region 34398
Tssr34399 3 94582759 to 94582770 11 - TSS region transcription start site region 34399
Tssr34400 3 94588049 to 94588079 30 - TSS region transcription start site region 34400
Gm15235 3 94589466 to 94589659 193 + pseudogene predicted gene 15235
Tssr30462 3 94591313 to 94591320 7 + TSS region transcription start site region 30462
Rpl31-ps11 3 94604408 to 94604784 376 - pseudogene ribosomal protein L31, pseudogene 11
Tuft1 3 94612757 to 94658872 46115 - protein coding gene tuftelin 1
Gm10972 3 94643112 to 94643600 488 + protein coding gene predicted gene 10972
Cpgi13486 3 94658149 to 94658381 232 CpG island CpG island 13486
Tssr34401 3 94658843 to 94658878 35 - TSS region transcription start site region 34401
Gm15234 3 94658961 to 94660115 1154 + lincRNA gene predicted gene 15234
BC021767 3 94660589 to 94667152 6563 - pseudogene cDNA sequence BC021767
Cpgi13487 3 94669925 to 94670085 160 CpG island CpG island 13487
Gm46814 3 94677212 to 94684670 7458 + lncRNA gene predicted gene, 46814
Tssr34402 3 94680858 to 94680873 15 - TSS region transcription start site region 34402
Tssr30463 3 94681059 to 94681066 7 + TSS region transcription start site region 30463
Tssr30464 3 94693562 to 94693568 6 + TSS region transcription start site region 30464
Selenbp2 3 94693573 to 94704406 10833 + protein coding gene selenium binding protein 2
Tssr30465 3 94699590 to 94699593 3 + TSS region transcription start site region 30465
Gm15264 3 94720023 to 94758116 38093 - pseudogene predicted gene 15264
Gm43711 3 94737343 to 94737715 372 + pseudogene predicted gene 43711
Tssr34403 3 94757411 to 94757416 5 - TSS region transcription start site region 34403
Cgn 3 94760069 to 94786492 26423 - protein coding gene cingulin
D3Umi5 3 94775664 to 94775883 219 DNA segment DNA segment, Chr 3, University of Michigan 5
Tssr34404 3 94783108 to 94783118 10 - TSS region transcription start site region 34404
Cpgi13488 3 94786108 to 94787016 908 CpG island CpG island 13488
Tssr34405 3 94786430 to 94786466 36 - TSS region transcription start site region 34405
Tssr34406 3 94786469 to 94786490 21 - TSS region transcription start site region 34406
Tssr30466 3 94786722 to 94786738 16 + TSS region transcription start site region 30466
Tssr30467 3 94787653 to 94787664 11 + TSS region transcription start site region 30467
Gm40094 3 94820847 to 94822308 1461 + lncRNA gene predicted gene, 40094
Cpgi13489 3 94821122 to 94821611 489 CpG island CpG island 13489
Gm15263 3 94832978 to 94833531 553 + pseudogene predicted gene 15263
Cpgi13490 3 94837309 to 94838463 1154 CpG island CpG island 13490
Tssr30468 3 94837380 to 94837419 39 + TSS region transcription start site region 30468
Tssr30469 3 94837428 to 94837458 30 + TSS region transcription start site region 30469
Tssr30470 3 94837533 to 94837564 31 + TSS region transcription start site region 30470
Pogz 3 94837567 to 94882326 44759 + protein coding gene pogo transposable element with ZNF domain
Tssr30471 3 94837611 to 94837627 16 + TSS region transcription start site region 30471
Tssr30472 3 94837682 to 94837693 11 + TSS region transcription start site region 30472
Tssr30473 3 94837702 to 94837723 21 + TSS region transcription start site region 30473
Tssr34407 3 94838344 to 94838350 6 - TSS region transcription start site region 34407
Tssr30474 3 94864153 to 94864165 12 + TSS region transcription start site region 30474
Psmb4 3 94884324 to 94886958 2634 - protein coding gene proteasome (prosome, macropain) subunit, beta type 4
Cpgi13491 3 94886356 to 94887116 760 CpG island CpG island 13491
Tssr34408 3 94886920 to 94886942 22 - TSS region transcription start site region 34408
Tssr34409 3 94886945 to 94886956 11 - TSS region transcription start site region 34409
Tssr30475 3 94886966 to 94886998 32 + TSS region transcription start site region 30475
D3Mit140 3 94890489 to 94890610 121 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 140
Gm36237 3 94917965 to 94923003 5038 + lncRNA gene predicted gene, 36237
Gm26279 3 94920322 to 94920423 101 - snRNA gene predicted gene, 26279
Tssr30476 3 94933041 to 94933073 32 + TSS region transcription start site region 30476
Selenbp1 3 94933083 to 94944758 11675 + protein coding gene selenium binding protein 1
Tssr30477 3 94933101 to 94933108 7 + TSS region transcription start site region 30477
D3Umi6 3 94952905 to 94953142 237 DNA segment DNA segment, Chr 3, University of Michigan 6
4930532J02Rik 3 94953307 to 94953986 679 unclassified gene RIKEN cDNA 4930532J02 gene
Cpgi13492 3 94954025 to 94954601 576 CpG island CpG island 13492
Rfx5 3 94954075 to 94961561 7486 + protein coding gene regulatory factor X, 5 (influences HLA class II expression)
Tssr30478 3 94954119 to 94954220 101 + TSS region transcription start site region 30478
B230398E01Rik 3 94959034 to 94962048 3014 - antisense lncRNA gene RIKEN cDNA B230398E01 gene
Cpgi13493 3 94974572 to 94975378 806 CpG island CpG island 13493
Tssr30479 3 94974693 to 94974719 26 + TSS region transcription start site region 30479
Tssr30480 3 94974728 to 94974753 25 + TSS region transcription start site region 30480
Pi4kb 3 94974731 to 95006843 32112 + protein coding gene phosphatidylinositol 4-kinase beta
Tssr30481 3 94974757 to 94974768 11 + TSS region transcription start site region 30481
Tssr30482 3 94974911 to 94974964 53 + TSS region transcription start site region 30482
Tssr30483 3 94974968 to 94974990 22 + TSS region transcription start site region 30483
Tssr34410 3 94979894 to 94979900 6 - TSS region transcription start site region 34410
D3Umi7 3 94983983 to 94984798 815 DNA segment DNA segment, Chr 3, University of Michigan 7
Tssr966 3 94984836 to 94984850 14 + TSS region transcription start site region 966
A730011C13Rik 3 94994410 to 94997350 2940 - antisense lncRNA gene RIKEN cDNA A730011C13 gene
Tssr34411 3 94997097 to 94997120 23 - TSS region transcription start site region 34411
Gm15265 3 94998800 to 95004869 6069 - antisense lncRNA gene predicted gene 15265
Tssr34412 3 95003410 to 95003414 4 - TSS region transcription start site region 34412
Mir7013 3 95004168 to 95004239 71 + miRNA gene microRNA 7013
Tssr30484 3 95004956 to 95005002 46 + TSS region transcription start site region 30484
Tssr30485 3 95006589 to 95006602 13 + TSS region transcription start site region 30485
Zfp687 3 95006590 to 95015448 8858 - protein coding gene zinc finger protein 687
Cpgi13494 3 95014415 to 95016783 2368 CpG island CpG island 13494
Tssr34413 3 95015214 to 95015246 32 - TSS region transcription start site region 34413
Tssr34414 3 95015416 to 95015462 46 - TSS region transcription start site region 34414
4930481B07Rik 3 95015625 to 95020138 4513 + lncRNA gene RIKEN cDNA 4930481B07 gene
Tssr30486 3 95015721 to 95015751 30 + TSS region transcription start site region 30486
Tssr30487 3 95015760 to 95015785 25 + TSS region transcription start site region 30487
Tssr34415 3 95025346 to 95025367 21 - TSS region transcription start site region 34415
D3Mit76 3 95028904 to 95029032 128 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 76
Psmd4 3 95032694 to 95042614 9920 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Tssr30488 3 95032784 to 95032791 7 + TSS region transcription start site region 30488
Cpgi13495 3 95042286 to 95042734 448 CpG island CpG island 13495
1700123N01Rik 3 95042324 to 95042928 604 unclassified gene RIKEN cDNA 1700123N01 gene
Tssr34416 3 95042542 to 95042579 37 - TSS region transcription start site region 34416
Pip5k1a 3 95058530 to 95106930 48400 - protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
Gm24920 3 95090625 to 95090709 84 - snoRNA gene predicted gene, 24920
Gm40095 3 95097043 to 95097371 328 - pseudogene predicted gene, 40095
Gm22301 3 95099500 to 95099606 106 + snRNA gene predicted gene, 22301
D3Umi8 3 95100039 to 95100161 122 DNA segment DNA segment, Chr 3, University of Michigan 8
Cpgi13496 3 95106252 to 95107111 859 CpG island CpG island 13496
Tssr34417 3 95106818 to 95106897 79 - TSS region transcription start site region 34417
Tssr34418 3 95106907 to 95106922 15 - TSS region transcription start site region 34418
Cpgi13497 3 95110869 to 95111618 749 CpG island CpG island 13497
Tssr30489 3 95111013 to 95111087 74 + TSS region transcription start site region 30489
Vps72 3 95111042 to 95123051 12009 + protein coding gene vacuolar protein sorting 72
D3Umi9 3 95122288 to 95122641 353 DNA segment DNA segment, Chr 3, University of Michigan 9
Tssr30490 3 95122520 to 95122532 12 + TSS region transcription start site region 30490
Tssr967 3 95124437 to 95124449 12 + TSS region transcription start site region 967
Tssr30491 3 95124451 to 95124465 14 + TSS region transcription start site region 30491
Tmod4 3 95124476 to 95129209 4733 + protein coding gene tropomodulin 4
Tssr30492 3 95124482 to 95124560 78 + TSS region transcription start site region 30492
Tssr30493 3 95126189 to 95126199 10 + TSS region transcription start site region 30493
Tssr30494 3 95126206 to 95126213 7 + TSS region transcription start site region 30494
Tssr30495 3 95126218 to 95126227 9 + TSS region transcription start site region 30495
Tssr30496 3 95126240 to 95126249 9 + TSS region transcription start site region 30496
Tssr30497 3 95127425 to 95127460 35 + TSS region transcription start site region 30497
Scnm1 3 95129719 to 95134045 4326 - protein coding gene sodium channel modifier 1
Tssr30498 3 95131435 to 95131440 5 + TSS region transcription start site region 30498
D3Umi10 3 95133727 to 95134239 512 DNA segment DNA segment, Chr 3, University of Michigan 10
Cpgi13498 3 95133807 to 95134055 248 CpG island CpG island 13498
Tssr34419 3 95133898 to 95133913 15 - TSS region transcription start site region 34419
Tssr34420 3 95133936 to 95133988 52 - TSS region transcription start site region 34420