Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:93456347-94286542

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37245 3 93306468 to 93465359 158891 - lincRNA gene predicted gene, 37245
Tssr34374 3 93465356 to 93465361 5 - TSS region transcription start site region 34374
Tssr30408 3 93468751 to 93468756 5 + TSS region transcription start site region 30408
Tchhl1 3 93468754 to 93471980 3226 + protein coding gene trichohyalin-like 1
Tssr30409 3 93470679 to 93470687 8 + TSS region transcription start site region 30409
D3Umi2 3 93482556 to 93482691 135 DNA segment DNA segment, Chr 3, University of Michigan 2
Gm36953 3 93499815 to 93500300 485 - pseudogene predicted gene, 36953
Tssr34375 3 93500322 to 93500334 12 - TSS region transcription start site region 34375
Tssr965 3 93505015 to 93505023 8 + TSS region transcription start site region 965
Tssr30410 3 93505048 to 93505092 44 + TSS region transcription start site region 30410
Tssr30411 3 93506582 to 93506601 19 + TSS region transcription start site region 30411
Tssr30412 3 93506606 to 93506613 7 + TSS region transcription start site region 30412
Tssr34376 3 93511168 to 93511185 17 - TSS region transcription start site region 34376
Tssr30413 3 93511275 to 93511296 21 + TSS region transcription start site region 30413
Tssr30414 3 93511297 to 93511320 23 + TSS region transcription start site region 30414
Tssr30415 3 93520369 to 93520391 22 + TSS region transcription start site region 30415
Tssr30416 3 93520473 to 93520501 28 + TSS region transcription start site region 30416
S100a11 3 93520496 to 93526288 5792 + protein coding gene S100 calcium binding protein A11
Cpgi13476 3 93520799 to 93520996 197 CpG island CpG island 13476
Tssr30417 3 93526054 to 93526090 36 + TSS region transcription start site region 30417
Gm29950 3 93530509 to 93530745 236 - pseudogene predicted gene, 29950
Tssr30418 3 93547940 to 93547951 11 + TSS region transcription start site region 30418
Cpgi13477 3 93555045 to 93555449 404 CpG island CpG island 13477
S100a10 3 93555080 to 93564643 9563 + protein coding gene S100 calcium binding protein A10 (calpactin)
Tssr30419 3 93555111 to 93555122 11 + TSS region transcription start site region 30419
Tssr30420 3 93555126 to 93555152 26 + TSS region transcription start site region 30420
Tssr30421 3 93555155 to 93555171 16 + TSS region transcription start site region 30421
Tssr30422 3 93560936 to 93560945 9 + TSS region transcription start site region 30422
Gm40093 3 93595359 to 93597504 2145 - lncRNA gene predicted gene, 40093
Gm18331 3 93605168 to 93605714 546 + pseudogene predicted gene, 18331
Gm5541 3 93628640 to 93629752 1112 - pseudogene predicted gene 5541
Gm38207 3 93638044 to 93641548 3504 + unclassified gene predicted gene, 38207
Tdpoz2 3 93651542 to 93652686 1144 - protein coding gene TD and POZ domain containing 2
Tdpoz1 3 93669333 to 93676283 6950 - protein coding gene TD and POZ domain containing 1
Gm9107 3 93691989 to 93693063 1074 - pseudogene predicted gene 9107
Gm37596 3 93692050 to 93693070 1020 - protein coding gene predicted gene, 37596
Gm18433 3 93707287 to 93708267 980 + pseudogene predicted gene, 18433
Gm38086 3 93724618 to 93725051 433 - pseudogene predicted gene, 38086
Gm5852 3 93727026 to 93728046 1020 - pseudogene predicted gene 5852
Gm5773 3 93773000 to 93774142 1142 + protein coding gene predicted pseudogene 5773
Tdpoz4 3 93796398 to 93797510 1112 + protein coding gene TD and POZ domain containing 4
Tssr30423 3 93820924 to 93820928 4 + TSS region transcription start site region 30423
Tdpoz3 3 93826020 to 93827117 1097 + protein coding gene TD and POZ domain containing 3
Gm37430 3 93871347 to 93871542 195 + pseudogene predicted gene, 37430
Gm9113 3 93873369 to 93874386 1017 - pseudogene predicted pseudogene 9113
Gm9116 3 93909825 to 93910842 1017 + pseudogene predicted gene 9116
Gm37185 3 93912843 to 93913252 409 + pseudogene predicted gene, 37185
Gm9117 3 93936626 to 93943516 6890 - protein coding gene predicted pseudogene 9117
Gm37104 3 93958071 to 93958266 195 + pseudogene predicted gene, 37104
Tdpoz5 3 93960292 to 93961314 1022 - protein coding gene TD and POZ domain containing 5
Gm37807 3 93969138 to 93969327 189 + pseudogene predicted gene, 37807
Gm37481 3 93977712 to 93978114 402 - pseudogene predicted gene, 37481
Gm9121 3 93980064 to 93981134 1070 - pseudogene predicted pseudogene 9121
Gm9124 3 94009931 to 94011022 1091 + pseudogene predicted pseudogene 9124
Gm37085 3 94012770 to 94012965 195 - pseudogene predicted gene, 37085
Tssr30424 3 94046721 to 94046722 1 + TSS region transcription start site region 30424
Gm9125 3 94047981 to 94054885 6904 - protein coding gene predicted gene 9125
Gm37081 3 94069404 to 94069599 195 + pseudogene predicted gene, 37081
Gm10697 3 94071622 to 94072644 1022 - protein coding gene predicted gene 10697
Gm37778 3 94079913 to 94080102 189 + pseudogene predicted gene, 37778
Gm37155 3 94088478 to 94088883 405 - pseudogene predicted gene, 37155
Gm5542 3 94090818 to 94091906 1088 - pseudogene predicted gene 5542
Gm9131 3 94119979 to 94121067 1088 + pseudogene predicted gene 9131
Gm37882 3 94122819 to 94123014 195 - pseudogene predicted gene, 37882
Gm5543 3 94157700 to 94158721 1021 - pseudogene predicted gene 5543
Gm37001 3 94166553 to 94166742 189 + pseudogene predicted gene, 37001
Gm20955 3 94166963 to 94169855 2892 - pseudogene predicted gene, 20955
Gm16560 3 94173080 to 94173483 403 - pseudogene predicted gene 16560
Gm10696 3 94174412 to 94178193 3781 - protein coding gene predicted gene 10696
Gm5286 3 94196714 to 94199802 3088 + protein coding gene predicted gene 5286
Gm16584 3 94201210 to 94201398 188 - pseudogene predicted gene 16584
Gm4982 3 94236702 to 94237799 1097 - pseudogene predicted gene 4982
Gm9141 3 94242464 to 94243470 1006 - pseudogene predicted gene 9141
D3Mit188 3 94246440 to 94246567 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 188
Gm4778 3 94264036 to 94266784 2748 + protein coding gene predicted gene 4778
Gm16561 3 94275233 to 94275424 191 - pseudogene predicted gene 16561
Gm36010 3 94277974 to 94309988 32014 - lncRNA gene predicted gene, 36010