Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:93017523-97987551

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1362 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lce1m 3 93017810 to 93019060 1250 - protein coding gene late cornified envelope 1M
Cpgi13474 3 93018148 to 93018472 324 CpG island CpG island 13474
Tssr34342 3 93019057 to 93019060 3 - TSS region transcription start site region 34342
Gm38040 3 93064740 to 93064964 224 - pseudogene predicted gene, 38040
Gm4858 3 93068823 to 93075505 6682 + protein coding gene predicted gene 4858
Gm35785 3 93097581 to 93128245 30664 - lncRNA gene predicted gene, 35785
Gm37361 3 93100466 to 93100597 131 - pseudogene predicted gene, 37361
Tssr34343 3 93100670 to 93100674 4 - TSS region transcription start site region 34343
Tssr30318 3 93144782 to 93144798 16 + TSS region transcription start site region 30318
Crnn 3 93144787 to 93149471 4684 + protein coding gene cornulin
D3Umi1 3 93148199 to 93148605 406 DNA segment DNA segment, Chr 3, University of Michigan 1
Gm37501 3 93152178 to 93152868 690 + pseudogene predicted gene, 37501
Tssr30319 3 93188582 to 93188600 18 + TSS region transcription start site region 30319
Tssr30320 3 93197270 to 93197284 14 + TSS region transcription start site region 30320
Flg2 3 93197273 to 93221377 24104 + protein coding gene filaggrin family member 2
Gm18432 3 93234919 to 93236176 1257 + pseudogene predicted gene, 18432
D3Mit141.1 3 93237291 to 93237453 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141.1
D3Mit141 3 93237373 to 93237521 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141
D3Mit141.2 3 93237535 to 93237649 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141.2
Tssr30321 3 93273519 to 93273524 5 + TSS region transcription start site region 30321
Flg 3 93273546 to 93293689 20143 + protein coding gene filaggrin
Tssr30322 3 93277544 to 93277560 16 + TSS region transcription start site region 30322
Tssr30323 3 93277583 to 93277591 8 + TSS region transcription start site region 30323
Tssr958 3 93277607 to 93277627 20 + TSS region transcription start site region 958
Tssr30324 3 93277639 to 93277652 13 + TSS region transcription start site region 30324
Tssr30325 3 93277663 to 93277679 16 + TSS region transcription start site region 30325
Tssr30326 3 93278064 to 93278072 8 + TSS region transcription start site region 30326
Rplp0-ps1 3 93278141 to 93279073 932 + pseudogene ribosomal protein, large, P0, pseudogene 1
Tssr30327 3 93279392 to 93279403 11 + TSS region transcription start site region 30327
Tssr30328 3 93279454 to 93279514 60 + TSS region transcription start site region 30328
Tssr30329 3 93279526 to 93279534 8 + TSS region transcription start site region 30329
Tssr30330 3 93279546 to 93279557 11 + TSS region transcription start site region 30330
Tssr959 3 93279559 to 93279567 8 + TSS region transcription start site region 959
Tssr30331 3 93279581 to 93279607 26 + TSS region transcription start site region 30331
Tssr30332 3 93279608 to 93279611 3 + TSS region transcription start site region 30332
Tssr34344 3 93279629 to 93279694 65 - TSS region transcription start site region 34344
Tssr34345 3 93279702 to 93279743 41 - TSS region transcription start site region 34345
Tssr30333 3 93279706 to 93279718 12 + TSS region transcription start site region 30333
Tssr34346 3 93279759 to 93279764 5 - TSS region transcription start site region 34346
Tssr34347 3 93279808 to 93279822 14 - TSS region transcription start site region 34347
Tssr30334 3 93293059 to 93293066 7 + TSS region transcription start site region 30334
Tssr30335 3 93293079 to 93293098 19 + TSS region transcription start site region 30335
Tssr30336 3 93293108 to 93293119 11 + TSS region transcription start site region 30336
Tssr30337 3 93293132 to 93293147 15 + TSS region transcription start site region 30337
Tssr30338 3 93293166 to 93293186 20 + TSS region transcription start site region 30338
Tssr30339 3 93293326 to 93293333 7 + TSS region transcription start site region 30339
Gm37922 3 93305015 to 93305469 454 + pseudogene predicted gene, 37922
Gm37913 3 93306468 to 93309011 2543 + unclassified gene predicted gene, 37913
Gm37245 3 93306468 to 93465359 158891 - lincRNA gene predicted gene, 37245
Tssr30340 3 93319740 to 93319754 14 + TSS region transcription start site region 30340
Hrnr 3 93319749 to 93333570 13821 + protein coding gene hornerin
Tssr34348 3 93376376 to 93376386 10 - TSS region transcription start site region 34348
Gm44353 3 93388689 to 93388826 137 + miRNA gene predicted gene, 44353
Tssr30341 3 93393696 to 93393699 3 + TSS region transcription start site region 30341
Gm37857 3 93393698 to 93394896 1198 + unclassified gene predicted gene, 37857
Rptn 3 93393699 to 93399442 5743 + protein coding gene repetin
Tssr30342 3 93397933 to 93397944 11 + TSS region transcription start site region 30342
Tssr30343 3 93398213 to 93398226 13 + TSS region transcription start site region 30343
Tssr34349 3 93411973 to 93412004 31 - TSS region transcription start site region 34349
Gm18296 3 93420682 to 93421364 682 - pseudogene predicted gene, 18296
Gm22752 3 93433197 to 93433305 108 - miRNA gene predicted gene, 22752
Gm5278 3 93433215 to 93433766 551 - pseudogene predicted pseudogene 5278
Tssr34350 3 93433848 to 93433854 6 - TSS region transcription start site region 34350
Tssr34351 3 93433940 to 93433962 22 - TSS region transcription start site region 34351
Tssr30344 3 93440761 to 93440764 3 + TSS region transcription start site region 30344
Tchh 3 93442330 to 93449077 6747 + protein coding gene trichohyalin
Tssr30345 3 93442371 to 93442389 18 + TSS region transcription start site region 30345
Tssr30346 3 93442407 to 93442414 7 + TSS region transcription start site region 30346
Tssr960 3 93443427 to 93443430 3 + TSS region transcription start site region 960
Tssr30347 3 93443451 to 93443473 22 + TSS region transcription start site region 30347
Tssr30348 3 93443490 to 93443493 3 + TSS region transcription start site region 30348
Tssr30349 3 93443496 to 93443505 9 + TSS region transcription start site region 30349
Cpgi13475 3 93443525 to 93448020 4495 CpG island CpG island 13475
Tssr30350 3 93443538 to 93443549 11 + TSS region transcription start site region 30350
Tssr30351 3 93443569 to 93443573 4 + TSS region transcription start site region 30351
Tssr30352 3 93443618 to 93443623 5 + TSS region transcription start site region 30352
Tssr30353 3 93443630 to 93443642 12 + TSS region transcription start site region 30353
Tssr30354 3 93443648 to 93443657 9 + TSS region transcription start site region 30354
Tssr30355 3 93443667 to 93443676 9 + TSS region transcription start site region 30355
Tssr30356 3 93443680 to 93443730 50 + TSS region transcription start site region 30356
Tssr30357 3 93443778 to 93443785 7 + TSS region transcription start site region 30357
Tssr34352 3 93443864 to 93443884 20 - TSS region transcription start site region 34352
Tssr34353 3 93443885 to 93443890 5 - TSS region transcription start site region 34353
Tssr30358 3 93443893 to 93443903 10 + TSS region transcription start site region 30358
Tssr34354 3 93443895 to 93443941 46 - TSS region transcription start site region 34354
Tssr30359 3 93443922 to 93443929 7 + TSS region transcription start site region 30359
Tssr30360 3 93443952 to 93443959 7 + TSS region transcription start site region 30360
Tssr961 3 93444003 to 93444006 3 + TSS region transcription start site region 961
Tssr34355 3 93444033 to 93444038 5 - TSS region transcription start site region 34355
Tssr30361 3 93444277 to 93444284 7 + TSS region transcription start site region 30361
Tssr30362 3 93444291 to 93444300 9 + TSS region transcription start site region 30362
Tssr30363 3 93444434 to 93444442 8 + TSS region transcription start site region 30363
Tssr30364 3 93444505 to 93444514 9 + TSS region transcription start site region 30364
Tssr30365 3 93444540 to 93444549 9 + TSS region transcription start site region 30365
Tssr30366 3 93444592 to 93444602 10 + TSS region transcription start site region 30366
Tssr30367 3 93444636 to 93444641 5 + TSS region transcription start site region 30367
Tssr30368 3 93444653 to 93444665 12 + TSS region transcription start site region 30368
Tssr30369 3 93444666 to 93444669 3 + TSS region transcription start site region 30369
Tssr30370 3 93444673 to 93444678 5 + TSS region transcription start site region 30370
Tssr30371 3 93444693 to 93444705 12 + TSS region transcription start site region 30371
Tssr34356 3 93444705 to 93444719 14 - TSS region transcription start site region 34356
Tssr30372 3 93444706 to 93444715 9 + TSS region transcription start site region 30372
Tssr34357 3 93444750 to 93444784 34 - TSS region transcription start site region 34357
Tssr30373 3 93444757 to 93444768 11 + TSS region transcription start site region 30373
Tssr30374 3 93444775 to 93444782 7 + TSS region transcription start site region 30374
Tssr30375 3 93444788 to 93444795 7 + TSS region transcription start site region 30375
Tssr34358 3 93444802 to 93444843 41 - TSS region transcription start site region 34358
Tssr30376 3 93444814 to 93444831 17 + TSS region transcription start site region 30376
Tssr30377 3 93444836 to 93444857 21 + TSS region transcription start site region 30377
Tssr30378 3 93444869 to 93444879 10 + TSS region transcription start site region 30378
Tssr34359 3 93444871 to 93444918 47 - TSS region transcription start site region 34359
Tssr30379 3 93444887 to 93444896 9 + TSS region transcription start site region 30379
Tssr34360 3 93444952 to 93444963 11 - TSS region transcription start site region 34360
Tssr30380 3 93444967 to 93444975 8 + TSS region transcription start site region 30380
Tssr34361 3 93444973 to 93445020 47 - TSS region transcription start site region 34361
Tssr30381 3 93444985 to 93444992 7 + TSS region transcription start site region 30381
Tssr34362 3 93445022 to 93445033 11 - TSS region transcription start site region 34362
Tssr30382 3 93445044 to 93445047 3 + TSS region transcription start site region 30382
Tssr34363 3 93445049 to 93445058 9 - TSS region transcription start site region 34363
Tssr30383 3 93445055 to 93445058 3 + TSS region transcription start site region 30383
Tssr30384 3 93445064 to 93445067 3 + TSS region transcription start site region 30384
Tssr34364 3 93445066 to 93445073 7 - TSS region transcription start site region 34364
Tssr34365 3 93445080 to 93445099 19 - TSS region transcription start site region 34365
Tssr30385 3 93445080 to 93445092 12 + TSS region transcription start site region 30385
Tssr30386 3 93445101 to 93445114 13 + TSS region transcription start site region 30386
Tssr962 3 93445123 to 93445126 3 + TSS region transcription start site region 962
Tssr34366 3 93445140 to 93445167 27 - TSS region transcription start site region 34366
Tssr963 3 93445160 to 93445162 2 + TSS region transcription start site region 963
Tssr30387 3 93445192 to 93445208 16 + TSS region transcription start site region 30387
Tssr30388 3 93445218 to 93445227 9 + TSS region transcription start site region 30388
Tssr30389 3 93445232 to 93445249 17 + TSS region transcription start site region 30389
Tssr964 3 93445256 to 93445261 5 + TSS region transcription start site region 964
Tssr34367 3 93445273 to 93445332 59 - TSS region transcription start site region 34367
Tssr30390 3 93445304 to 93445320 16 + TSS region transcription start site region 30390
Tssr30391 3 93445323 to 93445330 7 + TSS region transcription start site region 30391
Tssr30392 3 93445341 to 93445348 7 + TSS region transcription start site region 30392
Tssr34368 3 93445352 to 93445362 10 - TSS region transcription start site region 34368
Tssr30393 3 93445358 to 93445359 1 + TSS region transcription start site region 30393
Tssr34369 3 93445377 to 93445388 11 - TSS region transcription start site region 34369
Tssr30394 3 93445378 to 93445385 7 + TSS region transcription start site region 30394
Tssr34370 3 93445391 to 93445414 23 - TSS region transcription start site region 34370
Tssr30395 3 93445403 to 93445412 9 + TSS region transcription start site region 30395
Tssr34371 3 93445445 to 93445557 112 - TSS region transcription start site region 34371
Tssr30396 3 93445452 to 93445462 10 + TSS region transcription start site region 30396
Tssr30397 3 93445469 to 93445478 9 + TSS region transcription start site region 30397
Tssr30398 3 93445544 to 93445556 12 + TSS region transcription start site region 30398
Tssr30399 3 93445591 to 93445635 44 + TSS region transcription start site region 30399
Tssr30400 3 93446076 to 93446084 8 + TSS region transcription start site region 30400
Tssr30401 3 93446096 to 93446105 9 + TSS region transcription start site region 30401
Tssr30402 3 93446195 to 93446205 10 + TSS region transcription start site region 30402
Tssr34372 3 93446208 to 93446218 10 - TSS region transcription start site region 34372
Tssr30403 3 93446235 to 93446242 7 + TSS region transcription start site region 30403
Tssr30404 3 93447373 to 93447381 8 + TSS region transcription start site region 30404
Tssr34373 3 93447376 to 93447403 27 - TSS region transcription start site region 34373
Tssr30405 3 93447484 to 93447496 12 + TSS region transcription start site region 30405
Tssr30406 3 93447632 to 93447643 11 + TSS region transcription start site region 30406
Tssr30407 3 93447827 to 93447833 6 + TSS region transcription start site region 30407
Tssr34374 3 93465356 to 93465361 5 - TSS region transcription start site region 34374
Tssr30408 3 93468751 to 93468756 5 + TSS region transcription start site region 30408
Tchhl1 3 93468754 to 93471980 3226 + protein coding gene trichohyalin-like 1
Tssr30409 3 93470679 to 93470687 8 + TSS region transcription start site region 30409
D3Umi2 3 93482556 to 93482691 135 DNA segment DNA segment, Chr 3, University of Michigan 2
Gm36953 3 93499815 to 93500300 485 - pseudogene predicted gene, 36953
Tssr34375 3 93500322 to 93500334 12 - TSS region transcription start site region 34375
Tssr965 3 93505015 to 93505023 8 + TSS region transcription start site region 965
Tssr30410 3 93505048 to 93505092 44 + TSS region transcription start site region 30410
Tssr30411 3 93506582 to 93506601 19 + TSS region transcription start site region 30411
Tssr30412 3 93506606 to 93506613 7 + TSS region transcription start site region 30412
Tssr34376 3 93511168 to 93511185 17 - TSS region transcription start site region 34376
Tssr30413 3 93511275 to 93511296 21 + TSS region transcription start site region 30413
Tssr30414 3 93511297 to 93511320 23 + TSS region transcription start site region 30414
Tssr30415 3 93520369 to 93520391 22 + TSS region transcription start site region 30415
Tssr30416 3 93520473 to 93520501 28 + TSS region transcription start site region 30416
S100a11 3 93520496 to 93526288 5792 + protein coding gene S100 calcium binding protein A11
Cpgi13476 3 93520799 to 93520996 197 CpG island CpG island 13476
Tssr30417 3 93526054 to 93526090 36 + TSS region transcription start site region 30417
Gm29950 3 93530509 to 93530745 236 - pseudogene predicted gene, 29950
Tssr30418 3 93547940 to 93547951 11 + TSS region transcription start site region 30418
Cpgi13477 3 93555045 to 93555449 404 CpG island CpG island 13477
S100a10 3 93555080 to 93564643 9563 + protein coding gene S100 calcium binding protein A10 (calpactin)
Tssr30419 3 93555111 to 93555122 11 + TSS region transcription start site region 30419
Tssr30420 3 93555126 to 93555152 26 + TSS region transcription start site region 30420
Tssr30421 3 93555155 to 93555171 16 + TSS region transcription start site region 30421
Tssr30422 3 93560936 to 93560945 9 + TSS region transcription start site region 30422
Gm40093 3 93595359 to 93597504 2145 - lncRNA gene predicted gene, 40093
Gm18331 3 93605168 to 93605714 546 + pseudogene predicted gene, 18331
Gm5541 3 93628640 to 93629752 1112 - pseudogene predicted gene 5541
Gm38207 3 93638044 to 93641548 3504 + unclassified gene predicted gene, 38207
Tdpoz2 3 93651542 to 93652686 1144 - protein coding gene TD and POZ domain containing 2
Tdpoz1 3 93669333 to 93676283 6950 - protein coding gene TD and POZ domain containing 1
Gm9107 3 93691989 to 93693063 1074 - pseudogene predicted gene 9107
Gm37596 3 93692050 to 93693070 1020 - protein coding gene predicted gene, 37596
Gm18433 3 93707287 to 93708267 980 + pseudogene predicted gene, 18433
Gm38086 3 93724618 to 93725051 433 - pseudogene predicted gene, 38086
Gm5852 3 93727026 to 93728046 1020 - pseudogene predicted gene 5852
Gm5773 3 93773000 to 93774142 1142 + protein coding gene predicted pseudogene 5773
Tdpoz4 3 93796398 to 93797510 1112 + protein coding gene TD and POZ domain containing 4
Tssr30423 3 93820924 to 93820928 4 + TSS region transcription start site region 30423
Tdpoz3 3 93826020 to 93827117 1097 + protein coding gene TD and POZ domain containing 3
Gm37430 3 93871347 to 93871542 195 + pseudogene predicted gene, 37430