Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:92502681-93373072

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2310046K23Rik 3 92532505 to 92534511 2006 - protein coding gene RIKEN cDNA 2310046K23 gene
Tssr34298 3 92532960 to 92532972 12 - TSS region transcription start site region 34298
Tssr34299 3 92532978 to 92532989 11 - TSS region transcription start site region 34299
Tssr34300 3 92534502 to 92534519 17 - TSS region transcription start site region 34300
D3Mit156 3 92555995 to 92556242 247 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 156
Tmevd2 3 92555995 to 92556242 247 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2
Ivl 3 92570902 to 92573735 2833 - protein coding gene involucrin
Tssr34301 3 92573726 to 92573742 16 - TSS region transcription start site region 34301
Tssr34302 3 92573745 to 92573756 11 - TSS region transcription start site region 34302
Tssr34303 3 92573867 to 92573871 4 - TSS region transcription start site region 34303
Gm35639 3 92573870 to 92620330 46460 + lncRNA gene predicted gene, 35639
Tssr34304 3 92577120 to 92577128 8 - TSS region transcription start site region 34304
Smcp 3 92583867 to 92588997 5130 - protein coding gene sperm mitochondria-associated cysteine-rich protein
Tssr34305 3 92583999 to 92584014 15 - TSS region transcription start site region 34305
Tssr30302 3 92584130 to 92584133 3 + TSS region transcription start site region 30302
Tssr34306 3 92584165 to 92584176 11 - TSS region transcription start site region 34306
Tssr34307 3 92584362 to 92584390 28 - TSS region transcription start site region 34307
Tssr30303 3 92584385 to 92584393 8 + TSS region transcription start site region 30303
Tssr34308 3 92584397 to 92584405 8 - TSS region transcription start site region 34308
Tssr30304 3 92584406 to 92584416 10 + TSS region transcription start site region 30304
Tssr30305 3 92584425 to 92584439 14 + TSS region transcription start site region 30305
Tssr34309 3 92584430 to 92584437 7 - TSS region transcription start site region 34309
Tssr34310 3 92584440 to 92584449 9 - TSS region transcription start site region 34310
Tssr34311 3 92584478 to 92584481 3 - TSS region transcription start site region 34311
Tssr34312 3 92584503 to 92584517 14 - TSS region transcription start site region 34312
Tssr34313 3 92586200 to 92586205 5 - TSS region transcription start site region 34313
Tssr34314 3 92586843 to 92586852 9 - TSS region transcription start site region 34314
Tssr34315 3 92588954 to 92588979 25 - TSS region transcription start site region 34315
Tssr34316 3 92588982 to 92589017 35 - TSS region transcription start site region 34316
Tssr34317 3 92589022 to 92589025 3 - TSS region transcription start site region 34317
Tssr34318 3 92589037 to 92589043 6 - TSS region transcription start site region 34318
Tssr30306 3 92598676 to 92598698 22 + TSS region transcription start site region 30306
2210017I01Rik 3 92604718 to 92607492 2774 - protein coding gene RIKEN cDNA 2210017I01 gene
Tssr34319 3 92605941 to 92605944 3 - TSS region transcription start site region 34319
Lce6a 3 92620081 to 92621660 1579 - protein coding gene late cornified envelope 6A
Gm46812 3 92620338 to 92646439 26101 + lncRNA gene predicted gene, 46812
Tssr956 3 92621150 to 92621154 4 - TSS region transcription start site region 956
Tssr34320 3 92621173 to 92621188 15 - TSS region transcription start site region 34320
Tssr34321 3 92621206 to 92621220 14 - TSS region transcription start site region 34321
Tssr34322 3 92621238 to 92621248 10 - TSS region transcription start site region 34322
Gm35699 3 92639063 to 92640070 1007 - lncRNA gene predicted gene, 35699
Cpgi13471 3 92640064 to 92640244 180 CpG island CpG island 13471
Lce1a1 3 92646535 to 92648307 1772 - protein coding gene late cornified envelope 1A1
Tssr34323 3 92647380 to 92647385 5 - TSS region transcription start site region 34323
Tssr34324 3 92648303 to 92648308 5 - TSS region transcription start site region 34324
Lce1b 3 92655650 to 92656926 1276 - protein coding gene late cornified envelope 1B
Tssr34325 3 92656925 to 92656927 2 - TSS region transcription start site region 34325
Rpl13-ps4 3 92664214 to 92664841 627 + pseudogene ribosomal protein L13, pseudogene 4
Lce1a2 3 92668613 to 92670315 1702 - protein coding gene late cornified envelope 1A2
Tssr34326 3 92670314 to 92670316 2 - TSS region transcription start site region 34326
Tssr30307 3 92679245 to 92679247 2 + TSS region transcription start site region 30307
Lce1c 3 92679247 to 92680918 1671 + protein coding gene late cornified envelope 1C
Lce1d 3 92685499 to 92687210 1711 - protein coding gene late cornified envelope 1D
Tssr34327 3 92687209 to 92687211 2 - TSS region transcription start site region 34327
Tssr30308 3 92689291 to 92689306 15 + TSS region transcription start site region 30308
Tssr30309 3 92689307 to 92689337 30 + TSS region transcription start site region 30309
Tssr30310 3 92689370 to 92689406 36 + TSS region transcription start site region 30310
Gm4202 3 92689425 to 92690151 726 + pseudogene predicted gene 4202
Tssr30311 3 92690953 to 92690964 11 + TSS region transcription start site region 30311
Tssr30312 3 92691002 to 92691008 6 + TSS region transcription start site region 30312
Lce1e 3 92707401 to 92709074 1673 - protein coding gene late cornified envelope 1E
Tssr34328 3 92709073 to 92709075 2 - TSS region transcription start site region 34328
Lce1f 3 92718696 to 92720350 1654 - protein coding gene late cornified envelope 1F
Tssr34329 3 92720344 to 92720359 15 - TSS region transcription start site region 34329
Tssr34330 3 92720381 to 92720387 6 - TSS region transcription start site region 34330
Gm38119 3 92737651 to 92739096 1445 - protein coding gene predicted gene, 38119
Lce1g 3 92750151 to 92752338 2187 - protein coding gene late cornified envelope 1G
Tssr34331 3 92752337 to 92752338 1 - TSS region transcription start site region 34331
Lce1h 3 92763215 to 92765065 1850 - protein coding gene late cornified envelope 1H
Tssr34332 3 92765060 to 92765066 6 - TSS region transcription start site region 34332
Lce1i 3 92777210 to 92778899 1689 - protein coding gene late cornified envelope 1I
Tssr34333 3 92778895 to 92778903 8 - TSS region transcription start site region 34333
Lce1j 3 92788844 to 92790514 1670 - protein coding gene late cornified envelope 1J
Lce1k 3 92806291 to 92807891 1600 - protein coding gene late cornified envelope 1K
Tssr34334 3 92807891 to 92807904 13 - TSS region transcription start site region 34334
Tssr957 3 92813516 to 92813521 5 - TSS region transcription start site region 957
Kprp 3 92823074 to 92827247 4173 - protein coding gene keratinocyte expressed, proline-rich
Cpgi13472 3 92823940 to 92824378 438 CpG island CpG island 13472
Tssr34335 3 92825035 to 92825046 11 - TSS region transcription start site region 34335
Tssr34336 3 92827239 to 92827257 18 - TSS region transcription start site region 34336
Gm38201 3 92843297 to 92843683 386 - lincRNA gene predicted gene, 38201
Lce1l 3 92849949 to 92851286 1337 - protein coding gene late cornified envelope 1L
Tssr34337 3 92851284 to 92851286 2 - TSS region transcription start site region 34337
2310050C09Rik 3 92868359 to 92870205 1846 - protein coding gene RIKEN cDNA 2310050C09 gene
Tssr34338 3 92868995 to 92869007 12 - TSS region transcription start site region 34338
Tssr34339 3 92870215 to 92870224 9 - TSS region transcription start site region 34339
Lce3a 3 92925287 to 92926230 943 - protein coding gene late cornified envelope 3A
Tssr34340 3 92926242 to 92926247 5 - TSS region transcription start site region 34340
Tssr30313 3 92932975 to 92932983 8 + TSS region transcription start site region 30313
Lce3b 3 92932979 to 92934096 1117 + protein coding gene late cornified envelope 3B
Gm38078 3 92937681 to 92938072 391 + pseudogene predicted gene, 38078
Tssr30314 3 92944483 to 92944487 4 + TSS region transcription start site region 30314
Lce3c 3 92944486 to 92945730 1244 + protein coding gene late cornified envelope 3C
Gm24481 3 92949158 to 92949259 101 - snRNA gene predicted gene, 24481
Tssr30315 3 92957386 to 92957389 3 + TSS region transcription start site region 30315
Lce3d 3 92957390 to 92958505 1115 + protein coding gene late cornified envelope 3D
Gm22577 3 92962008 to 92962116 108 - snRNA gene predicted gene, 22577
Tssr30316 3 92967059 to 92967062 3 + TSS region transcription start site region 30316
Lce3e 3 92967061 to 92968281 1220 + protein coding gene late cornified envelope 3E
Tssr30317 3 92992213 to 92992221 8 + TSS region transcription start site region 30317
Lce3f 3 92992226 to 92993426 1200 + protein coding gene late cornified envelope 3F
Crct1 3 93014205 to 93015686 1481 - protein coding gene cysteine-rich C-terminal 1
Cpgi13473 3 93014470 to 93014796 326 CpG island CpG island 13473
Tssr34341 3 93015679 to 93015694 15 - TSS region transcription start site region 34341
D3Mit311 3 93017195 to 93017313 118 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 311
Lce1m 3 93017810 to 93019060 1250 - protein coding gene late cornified envelope 1M
Cpgi13474 3 93018148 to 93018472 324 CpG island CpG island 13474
Tssr34342 3 93019057 to 93019060 3 - TSS region transcription start site region 34342
Gm38040 3 93064740 to 93064964 224 - pseudogene predicted gene, 38040
Gm4858 3 93068823 to 93075505 6682 + protein coding gene predicted gene 4858
Gm35785 3 93097581 to 93128245 30664 - lncRNA gene predicted gene, 35785
Gm37361 3 93100466 to 93100597 131 - pseudogene predicted gene, 37361
Tssr34343 3 93100670 to 93100674 4 - TSS region transcription start site region 34343
Tssr30318 3 93144782 to 93144798 16 + TSS region transcription start site region 30318
Crnn 3 93144787 to 93149471 4684 + protein coding gene cornulin
D3Umi1 3 93148199 to 93148605 406 DNA segment DNA segment, Chr 3, University of Michigan 1
Gm37501 3 93152178 to 93152868 690 + pseudogene predicted gene, 37501
Tssr30319 3 93188582 to 93188600 18 + TSS region transcription start site region 30319
Tssr30320 3 93197270 to 93197284 14 + TSS region transcription start site region 30320
Flg2 3 93197273 to 93221377 24104 + protein coding gene filaggrin family member 2
Gm18432 3 93234919 to 93236176 1257 + pseudogene predicted gene, 18432
D3Mit141.1 3 93237291 to 93237453 162 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141.1
D3Mit141 3 93237373 to 93237521 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141
D3Mit141.2 3 93237535 to 93237649 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 141.2
Tssr30321 3 93273519 to 93273524 5 + TSS region transcription start site region 30321
Flg 3 93273546 to 93293689 20143 + protein coding gene filaggrin
Tssr30322 3 93277544 to 93277560 16 + TSS region transcription start site region 30322
Tssr30323 3 93277583 to 93277591 8 + TSS region transcription start site region 30323
Tssr958 3 93277607 to 93277627 20 + TSS region transcription start site region 958
Tssr30324 3 93277639 to 93277652 13 + TSS region transcription start site region 30324
Tssr30325 3 93277663 to 93277679 16 + TSS region transcription start site region 30325
Tssr30326 3 93278064 to 93278072 8 + TSS region transcription start site region 30326
Rplp0-ps1 3 93278141 to 93279073 932 + pseudogene ribosomal protein, large, P0, pseudogene 1
Tssr30327 3 93279392 to 93279403 11 + TSS region transcription start site region 30327
Tssr30328 3 93279454 to 93279514 60 + TSS region transcription start site region 30328
Tssr30329 3 93279526 to 93279534 8 + TSS region transcription start site region 30329
Tssr30330 3 93279546 to 93279557 11 + TSS region transcription start site region 30330
Tssr959 3 93279559 to 93279567 8 + TSS region transcription start site region 959
Tssr30331 3 93279581 to 93279607 26 + TSS region transcription start site region 30331
Tssr30332 3 93279608 to 93279611 3 + TSS region transcription start site region 30332
Tssr34344 3 93279629 to 93279694 65 - TSS region transcription start site region 34344
Tssr34345 3 93279702 to 93279743 41 - TSS region transcription start site region 34345
Tssr30333 3 93279706 to 93279718 12 + TSS region transcription start site region 30333
Tssr34346 3 93279759 to 93279764 5 - TSS region transcription start site region 34346
Tssr34347 3 93279808 to 93279822 14 - TSS region transcription start site region 34347
Tssr30334 3 93293059 to 93293066 7 + TSS region transcription start site region 30334
Tssr30335 3 93293079 to 93293098 19 + TSS region transcription start site region 30335
Tssr30336 3 93293108 to 93293119 11 + TSS region transcription start site region 30336
Tssr30337 3 93293132 to 93293147 15 + TSS region transcription start site region 30337
Tssr30338 3 93293166 to 93293186 20 + TSS region transcription start site region 30338
Tssr30339 3 93293326 to 93293333 7 + TSS region transcription start site region 30339
Gm37922 3 93305015 to 93305469 454 + pseudogene predicted gene, 37922
Gm37913 3 93306468 to 93309011 2543 + unclassified gene predicted gene, 37913
Gm37245 3 93306468 to 93465359 158891 - lincRNA gene predicted gene, 37245
Tssr30340 3 93319740 to 93319754 14 + TSS region transcription start site region 30340
Hrnr 3 93319749 to 93333570 13821 + protein coding gene hornerin