Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:9098912-9788914

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41996 3 9157271 to 9174711 17440 - lncRNA gene predicted gene, 41996
Gm33018 3 9177692 to 9182437 4745 - lncRNA gene predicted gene, 33018
Cpgi12970 3 9249735 to 9252217 2482 CpG island CpG island 12970
Tssr28341 3 9250012 to 9250024 12 + TSS region transcription start site region 28341
Tssr28342 3 9250036 to 9250047 11 + TSS region transcription start site region 28342
Zbtb10 3 9250602 to 9285333 34731 + protein coding gene zinc finger and BTB domain containing 10
D3Mit166 3 9266659 to 9266796 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 166
Gm41997 3 9302688 to 9343835 41147 - lncRNA gene predicted gene, 41997
D3Mit177 3 9324088 to 9324228 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 177
Cpgi12971 3 9334234 to 9334513 279 CpG island CpG island 12971
Cpgi12972 3 9346848 to 9347257 409 CpG island CpG island 12972
Cpgi12973 3 9365252 to 9365557 305 CpG island CpG island 12973
Gm22604 3 9402175 to 9402485 310 + unclassified non-coding RNA gene predicted gene, 22604
Tssr28343 3 9402994 to 9403027 33 + TSS region transcription start site region 28343
Tssr28344 3 9403049 to 9403092 43 + TSS region transcription start site region 28344
C030034L19Rik 3 9403078 to 9413903 10825 + lincRNA gene RIKEN cDNA C030034L19 gene
Tssr28345 3 9403111 to 9403130 19 + TSS region transcription start site region 28345
Zfp704 3 9427020 to 9610085 183065 - protein coding gene zinc finger protein 704
Tssr32577 3 9443912 to 9443914 2 - TSS region transcription start site region 32577
Gm38001 3 9496168 to 9499928 3760 + unclassified gene predicted gene, 38001
Cpgi12974 3 9608594 to 9610516 1922 CpG island CpG island 12974
Tssr28346 3 9608803 to 9608824 21 + TSS region transcription start site region 28346
Tssr28347 3 9608826 to 9608841 15 + TSS region transcription start site region 28347
Tssr32578 3 9610033 to 9610040 7 - TSS region transcription start site region 32578
Tssr32579 3 9610074 to 9610086 12 - TSS region transcription start site region 32579
Tssr32580 3 9610090 to 9610124 34 - TSS region transcription start site region 32580
Tssr32581 3 9610233 to 9610247 14 - TSS region transcription start site region 32581
Tssr32582 3 9623519 to 9623528 9 - TSS region transcription start site region 32582
Cpgi12975 3 9629957 to 9630108 151 CpG island CpG island 12975
Gm33169 3 9646323 to 9663118 16795 - lncRNA gene predicted gene, 33169
Gm17806 3 9656520 to 9656902 382 + pseudogene predicted gene, 17806
Tssr28348 3 9658352 to 9658359 7 + TSS region transcription start site region 28348
Tssr28349 3 9658371 to 9658378 7 + TSS region transcription start site region 28349
D3Mit202 3 9669772 to 9669910 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 202
Pag1 3 9687479 to 9833679 146200 - protein coding gene phosphoprotein associated with glycosphingolipid microdomains 1
Tssr32583 3 9705000 to 9705004 4 - TSS region transcription start site region 32583
Gm16337 3 9757607 to 9786142 28535 + lincRNA gene predicted gene 16337
Tssr32584 3 9761153 to 9761156 3 - TSS region transcription start site region 32584
Tssr32585 3 9778793 to 9778804 11 - TSS region transcription start site region 32585
Tssr32586 3 9786518 to 9786526 8 - TSS region transcription start site region 32586