Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90656809-94218789

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486 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
S100a7a 3 90654017 to 90658669 4652 + protein coding gene S100 calcium binding protein A7A
Tssr34247 3 90659423 to 90659436 13 - TSS region transcription start site region 34247
Tssr34248 3 90659441 to 90659448 7 - TSS region transcription start site region 34248
Tssr30264 3 90659651 to 90659660 9 + TSS region transcription start site region 30264
Tssr946 3 90659950 to 90659990 40 + TSS region transcription start site region 946
Tssr30265 3 90669063 to 90669076 13 + TSS region transcription start site region 30265
S100a8 3 90669071 to 90670034 963 + protein coding gene S100 calcium binding protein A8 (calgranulin A)
Tssr30266 3 90669533 to 90669574 41 + TSS region transcription start site region 30266
Tssr30267 3 90669929 to 90669940 11 + TSS region transcription start site region 30267
Tssr947 3 90669953 to 90669966 13 - TSS region transcription start site region 947
Tssr34249 3 90670027 to 90670033 6 - TSS region transcription start site region 34249
Tssr34250 3 90678726 to 90678738 12 - TSS region transcription start site region 34250
Tssr34251 3 90682754 to 90682763 9 - TSS region transcription start site region 34251
Tssr948 3 90687108 to 90687115 7 + TSS region transcription start site region 948
Tssr30268 3 90692631 to 90692638 7 + TSS region transcription start site region 30268
S100a9 3 90692632 to 90695721 3089 - protein coding gene S100 calcium binding protein A9 (calgranulin B)
Tssr34252 3 90692717 to 90692733 16 - TSS region transcription start site region 34252
Tssr30269 3 90692717 to 90692749 32 + TSS region transcription start site region 30269
Tssr949 3 90692777 to 90692790 13 + TSS region transcription start site region 949
Tssr34253 3 90692835 to 90692865 30 - TSS region transcription start site region 34253
Tssr950 3 90692875 to 90692921 46 - TSS region transcription start site region 950
Tssr30270 3 90692877 to 90692897 20 + TSS region transcription start site region 30270
Tssr951 3 90694171 to 90694211 40 - TSS region transcription start site region 951
Tssr34254 3 90694954 to 90694973 19 - TSS region transcription start site region 34254
Tssr34255 3 90695049 to 90695067 18 - TSS region transcription start site region 34255
Tssr952 3 90695122 to 90695154 32 + TSS region transcription start site region 952
Tssr34256 3 90695124 to 90695134 10 - TSS region transcription start site region 34256
Tssr953 3 90695168 to 90695173 5 - TSS region transcription start site region 953
Tssr34257 3 90695184 to 90695243 59 - TSS region transcription start site region 34257
Tssr34258 3 90695245 to 90695325 80 - TSS region transcription start site region 34258
Tssr34259 3 90695372 to 90695381 9 - TSS region transcription start site region 34259
Tssr34260 3 90695684 to 90695697 13 - TSS region transcription start site region 34260
Tssr34261 3 90695706 to 90695721 15 - TSS region transcription start site region 34261
Tssr34262 3 90695756 to 90695764 8 - TSS region transcription start site region 34262
Tssr34263 3 90695788 to 90695796 8 - TSS region transcription start site region 34263
Tssr954 3 90695993 to 90696000 7 + TSS region transcription start site region 954
Tssr30271 3 90696034 to 90696041 7 + TSS region transcription start site region 30271
Gm42579 3 90708881 to 90709614 733 - pseudogene predicted gene 42579
Gm5284 3 90722611 to 90723513 902 - pseudogene predicted gene 5284
Tssr30272 3 90725887 to 90725909 22 + TSS region transcription start site region 30272
Pglyrp4 3 90726906 to 90741517 14611 + protein coding gene peptidoglycan recognition protein 4
Gm35013 3 90758732 to 90759563 831 + pseudogene predicted gene, 35013
Gm5104 3 90759367 to 90761313 1946 + pseudogene predicted gene 5104
Gm5849 3 90775946 to 90777876 1930 - protein coding gene predicted gene 5849
Gm43235 3 90846372 to 90848254 1882 - pseudogene predicted gene 43235
Tssr955 3 90854384 to 90854385 1 - TSS region transcription start site region 955
Tssr34264 3 90889125 to 90889131 6 - TSS region transcription start site region 34264
Gm9023 3 91010083 to 91017184 7101 - pseudogene predicted gene 9023
Gm7166 3 91039573 to 91039875 302 + pseudogene predicted gene 7166
4930529C04Rik 3 91071662 to 91075192 3530 + pseudogene RIKEN cDNA 4930529C04 gene
9130204L05Rik 3 91088137 to 91090803 2666 - protein coding gene RIKEN cDNA 9130204L05 gene
Tssr30273 3 91114357 to 91114361 4 + TSS region transcription start site region 30273
Tssr30274 3 91278435 to 91278439 4 + TSS region transcription start site region 30274
Gm36323 3 91628563 to 91630704 2141 - protein coding gene predicted gene, 36323
Gm35185 3 91738353 to 91740494 2141 - protein coding gene predicted gene, 35185
Gm46837 3 91914377 to 91916526 2149 + pseudogene predicted gene, 46837
Gm17742 3 91996114 to 91997246 1132 + pseudogene predicted gene, 17742
Gm23697 3 92010756 to 92010865 109 - miRNA gene predicted gene, 23697
Tssr30275 3 92012428 to 92012462 34 + TSS region transcription start site region 30275
Pglyrp3 3 92014583 to 92031582 16999 + protein coding gene peptidoglycan recognition protein 3
Cpgi13469 3 92024448 to 92024843 395 CpG island CpG island 13469
Tssr30276 3 92024481 to 92024524 43 + TSS region transcription start site region 30276
Tssr30277 3 92024528 to 92024539 11 + TSS region transcription start site region 30277
Tssr30278 3 92024546 to 92024561 15 + TSS region transcription start site region 30278
Mif-ps3 3 92024567 to 92024911 344 + pseudogene macrophage migration inhibitory factor, pseudogene 3
Gm25145 3 92061397 to 92061506 109 - miRNA gene predicted gene, 25145
Lor 3 92080271 to 92083142 2871 - protein coding gene loricrin
Tssr34265 3 92080301 to 92080347 46 - TSS region transcription start site region 34265
Tssr34266 3 92080385 to 92080412 27 - TSS region transcription start site region 34266
Cpgi13470 3 92080390 to 92082191 1801 CpG island CpG island 13470
Tssr34267 3 92080913 to 92080931 18 - TSS region transcription start site region 34267
Tssr34268 3 92081353 to 92081366 13 - TSS region transcription start site region 34268
Tssr34269 3 92081643 to 92081659 16 - TSS region transcription start site region 34269
Tssr34270 3 92083132 to 92083147 15 - TSS region transcription start site region 34270
Gm43736 3 92097351 to 92099631 2280 + lincRNA gene predicted gene 43736
4930511M18Rik 3 92102578 to 92142736 40158 - sense overlapping lncRNA gene RIKEN cDNA 4930511M18 gene
Tssr30279 3 92113186 to 92113199 13 + TSS region transcription start site region 30279
Gm43735 3 92113192 to 92119317 6125 + antisense lncRNA gene predicted gene 43735
Prr9 3 92122204 to 92123947 1743 - protein coding gene proline rich 9
Tssr34271 3 92123943 to 92123953 10 - TSS region transcription start site region 34271
Lelp1 3 92134997 to 92142744 7747 - protein coding gene late cornified envelope-like proline-rich 1
Tssr34272 3 92142738 to 92142766 28 - TSS region transcription start site region 34272
Tssr30280 3 92170212 to 92170222 10 + TSS region transcription start site region 30280
Gm35439 3 92170221 to 92177907 7686 + lincRNA gene predicted gene, 35439
Tssr30281 3 92194326 to 92194328 2 + TSS region transcription start site region 30281
Sprr2a1 3 92215799 to 92221911 6112 + protein coding gene small proline-rich protein 2A1
Gm5850 3 92227469 to 92228674 1205 - pseudogene predicted gene 5850
Gm37087 3 92242933 to 92246241 3308 - unclassified gene predicted gene, 37087
Sprr2a2 3 92250647 to 92257304 6657 + protein coding gene small proline-rich protein 2A2
Gm5851 3 92262271 to 92263474 1203 - pseudogene predicted gene 5851
Gm37752 3 92277725 to 92281033 3308 - unclassified gene predicted gene, 37752
Sprr2a3 3 92285304 to 92289264 3960 + protein coding gene small proline-rich protein 2A3
Sprr2b 3 92316705 to 92318085 1380 + protein coding gene small proline-rich protein 2B
Gm37428 3 92320911 to 92321047 136 + pseudogene predicted gene, 37428
Sprr2c-ps 3 92326599 to 92326829 230 + pseudogene small proline-rich protein 2C, pseudogene
Tssr30282 3 92339074 to 92339081 7 + TSS region transcription start site region 30282
Tssr30283 3 92339132 to 92339146 14 + TSS region transcription start site region 30283
Sprr2d 3 92339140 to 92340873 1733 + protein coding gene small proline-rich protein 2D
Tssr30284 3 92352141 to 92352144 3 + TSS region transcription start site region 30284
Sprr2e 3 92352143 to 92353449 1306 + protein coding gene small proline-rich protein 2E
Tssr30285 3 92365148 to 92365156 8 + TSS region transcription start site region 30285
Tssr30286 3 92365178 to 92365193 15 + TSS region transcription start site region 30286
Sprr2f 3 92365187 to 92366442 1255 + protein coding gene small proline-rich protein 2F
Tssr30287 3 92365881 to 92365890 9 + TSS region transcription start site region 30287
Tssr30288 3 92366036 to 92366046 10 + TSS region transcription start site region 30288
Tssr30289 3 92373847 to 92373858 11 + TSS region transcription start site region 30289
Tssr30290 3 92373875 to 92373893 18 + TSS region transcription start site region 30290
Tssr30291 3 92373908 to 92373921 13 + TSS region transcription start site region 30291
Sprr2g 3 92373915 to 92375229 1314 + polymorphic pseudogene small proline-rich protein 2G
Tssr30292 3 92385683 to 92385687 4 + TSS region transcription start site region 30292
Sprr2h 3 92385685 to 92387324 1639 + protein coding gene small proline-rich protein 2H
Tssr30293 3 92407983 to 92407997 14 + TSS region transcription start site region 30293
Sprr2i 3 92407991 to 92409271 1280 + protein coding gene small proline-rich protein 2I
Tssr30294 3 92418079 to 92418088 9 + TSS region transcription start site region 30294
Sprr2j-ps 3 92418087 to 92419396 1309 + pseudogene small proline-rich protein 2J, pseudogene
Tssr30295 3 92418120 to 92418133 13 + TSS region transcription start site region 30295
Gm9774 3 92428067 to 92429423 1356 - protein coding gene predicted pseudogene 9774
Tssr34273 3 92429403 to 92429426 23 - TSS region transcription start site region 34273
Tssr30296 3 92432578 to 92432585 7 + TSS region transcription start site region 30296
Sprr2k 3 92432582 to 92433925 1343 + protein coding gene small proline-rich protein 2K
Sprr1b 3 92436809 to 92438789 1980 - protein coding gene small proline-rich protein 1B
Tssr34274 3 92438771 to 92438786 15 - TSS region transcription start site region 34274
Sprr3 3 92456502 to 92458720 2218 - protein coding gene small proline-rich protein 3
Tssr30297 3 92456813 to 92456841 28 + TSS region transcription start site region 30297
Tssr34275 3 92456857 to 92456884 27 - TSS region transcription start site region 34275
Tssr34276 3 92457193 to 92457203 10 - TSS region transcription start site region 34276
Tssr34277 3 92457241 to 92457252 11 - TSS region transcription start site region 34277
Tssr34278 3 92457289 to 92457300 11 - TSS region transcription start site region 34278
Tssr34279 3 92457331 to 92457341 10 - TSS region transcription start site region 34279
Tssr34280 3 92457490 to 92457514 24 - TSS region transcription start site region 34280
Tssr34281 3 92458715 to 92458730 15 - TSS region transcription start site region 34281
Gm37377 3 92473240 to 92473543 303 - pseudogene predicted gene, 37377
Tssr30298 3 92483952 to 92483957 5 + TSS region transcription start site region 30298
Sprr1a 3 92483954 to 92485881 1927 - protein coding gene small proline-rich protein 1A
Tssr30299 3 92484115 to 92484160 45 + TSS region transcription start site region 30299
Tssr34282 3 92484137 to 92484148 11 - TSS region transcription start site region 34282
Tssr34283 3 92484206 to 92484215 9 - TSS region transcription start site region 34283
Tssr30300 3 92484232 to 92484279 47 + TSS region transcription start site region 30300
Tssr34284 3 92484298 to 92484330 32 - TSS region transcription start site region 34284
Tssr34285 3 92484338 to 92484349 11 - TSS region transcription start site region 34285
Tssr34286 3 92484360 to 92484371 11 - TSS region transcription start site region 34286
Tssr34287 3 92484388 to 92484394 6 - TSS region transcription start site region 34287
Tssr34288 3 92484412 to 92484419 7 - TSS region transcription start site region 34288
Tssr34289 3 92484484 to 92484491 7 - TSS region transcription start site region 34289
Tssr34290 3 92484528 to 92484540 12 - TSS region transcription start site region 34290
Tssr34291 3 92484607 to 92484616 9 - TSS region transcription start site region 34291
Tssr34292 3 92484617 to 92484627 10 - TSS region transcription start site region 34292
Tssr34293 3 92484660 to 92484671 11 - TSS region transcription start site region 34293
Tssr34294 3 92484683 to 92484692 9 - TSS region transcription start site region 34294
Tssr34295 3 92484697 to 92484713 16 - TSS region transcription start site region 34295
Tssr34296 3 92485886 to 92485901 15 - TSS region transcription start site region 34296
Sprr4 3 92500263 to 92500493 230 - protein coding gene small proline-rich protein 4
Tssr34297 3 92501761 to 92501765 4 - TSS region transcription start site region 34297
Tssr30301 3 92502553 to 92502554 1 + TSS region transcription start site region 30301
2310046K23Rik 3 92532505 to 92534511 2006 - protein coding gene RIKEN cDNA 2310046K23 gene
Tssr34298 3 92532960 to 92532972 12 - TSS region transcription start site region 34298
Tssr34299 3 92532978 to 92532989 11 - TSS region transcription start site region 34299
Tssr34300 3 92534502 to 92534519 17 - TSS region transcription start site region 34300
D3Mit156 3 92555995 to 92556242 247 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 156
Tmevd2 3 92555995 to 92556242 247 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2
Ivl 3 92570902 to 92573735 2833 - protein coding gene involucrin
Tssr34301 3 92573726 to 92573742 16 - TSS region transcription start site region 34301
Tssr34302 3 92573745 to 92573756 11 - TSS region transcription start site region 34302
Tssr34303 3 92573867 to 92573871 4 - TSS region transcription start site region 34303
Gm35639 3 92573870 to 92620330 46460 + lncRNA gene predicted gene, 35639
Tssr34304 3 92577120 to 92577128 8 - TSS region transcription start site region 34304
Smcp 3 92583867 to 92588997 5130 - protein coding gene sperm mitochondria-associated cysteine-rich protein
Tssr34305 3 92583999 to 92584014 15 - TSS region transcription start site region 34305
Tssr30302 3 92584130 to 92584133 3 + TSS region transcription start site region 30302
Tssr34306 3 92584165 to 92584176 11 - TSS region transcription start site region 34306
Tssr34307 3 92584362 to 92584390 28 - TSS region transcription start site region 34307
Tssr30303 3 92584385 to 92584393 8 + TSS region transcription start site region 30303
Tssr34308 3 92584397 to 92584405 8 - TSS region transcription start site region 34308
Tssr30304 3 92584406 to 92584416 10 + TSS region transcription start site region 30304
Tssr30305 3 92584425 to 92584439 14 + TSS region transcription start site region 30305
Tssr34309 3 92584430 to 92584437 7 - TSS region transcription start site region 34309
Tssr34310 3 92584440 to 92584449 9 - TSS region transcription start site region 34310
Tssr34311 3 92584478 to 92584481 3 - TSS region transcription start site region 34311
Tssr34312 3 92584503 to 92584517 14 - TSS region transcription start site region 34312
Tssr34313 3 92586200 to 92586205 5 - TSS region transcription start site region 34313
Tssr34314 3 92586843 to 92586852 9 - TSS region transcription start site region 34314
Tssr34315 3 92588954 to 92588979 25 - TSS region transcription start site region 34315
Tssr34316 3 92588982 to 92589017 35 - TSS region transcription start site region 34316
Tssr34317 3 92589022 to 92589025 3 - TSS region transcription start site region 34317
Tssr34318 3 92589037 to 92589043 6 - TSS region transcription start site region 34318
Tssr30306 3 92598676 to 92598698 22 + TSS region transcription start site region 30306
2210017I01Rik 3 92604718 to 92607492 2774 - protein coding gene RIKEN cDNA 2210017I01 gene
Tssr34319 3 92605941 to 92605944 3 - TSS region transcription start site region 34319
Lce6a 3 92620081 to 92621660 1579 - protein coding gene late cornified envelope 6A
Gm46812 3 92620338 to 92646439 26101 + lncRNA gene predicted gene, 46812
Tssr956 3 92621150 to 92621154 4 - TSS region transcription start site region 956
Tssr34320 3 92621173 to 92621188 15 - TSS region transcription start site region 34320
Tssr34321 3 92621206 to 92621220 14 - TSS region transcription start site region 34321
Tssr34322 3 92621238 to 92621248 10 - TSS region transcription start site region 34322
Gm35699 3 92639063 to 92640070 1007 - lncRNA gene predicted gene, 35699
Cpgi13471 3 92640064 to 92640244 180 CpG island CpG island 13471
Lce1a1 3 92646535 to 92648307 1772 - protein coding gene late cornified envelope 1A1
Tssr34323 3 92647380 to 92647385 5 - TSS region transcription start site region 34323
Tssr34324 3 92648303 to 92648308 5 - TSS region transcription start site region 34324
Lce1b 3 92655650 to 92656926 1276 - protein coding gene late cornified envelope 1B