Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90523536-90653550

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
S100a13 3 90514435 to 90524581 10146 + protein coding gene S100 calcium binding protein A13
Tssr30211 3 90526774 to 90526779 5 + TSS region transcription start site region 30211
Tssr30212 3 90526825 to 90526832 7 + TSS region transcription start site region 30212
Tssr30213 3 90526856 to 90526859 3 + TSS region transcription start site region 30213
S100a14 3 90526856 to 90528837 1981 + protein coding gene S100 calcium binding protein A14
Tssr30214 3 90526861 to 90526881 20 + TSS region transcription start site region 30214
Tssr30215 3 90527142 to 90527176 34 + TSS region transcription start site region 30215
Tssr30216 3 90527739 to 90527753 14 + TSS region transcription start site region 30216
Tssr30217 3 90537230 to 90537241 11 + TSS region transcription start site region 30217
Tssr30218 3 90537242 to 90537270 28 + TSS region transcription start site region 30218
S100a16 3 90537257 to 90543151 5894 + protein coding gene S100 calcium binding protein A16
Tssr30219 3 90537291 to 90537304 13 + TSS region transcription start site region 30219
Tssr30220 3 90537306 to 90537326 20 + TSS region transcription start site region 30220
Tssr30221 3 90537333 to 90537386 53 + TSS region transcription start site region 30221
Tssr30222 3 90539645 to 90539660 15 + TSS region transcription start site region 30222
Tssr30223 3 90539675 to 90539691 16 + TSS region transcription start site region 30223
Tssr30224 3 90541155 to 90541173 18 + TSS region transcription start site region 30224
Tssr30225 3 90541177 to 90541186 9 + TSS region transcription start site region 30225
Tssr30226 3 90541189 to 90541213 24 + TSS region transcription start site region 30226
Tssr30227 3 90541217 to 90541241 24 + TSS region transcription start site region 30227
Tssr30228 3 90541258 to 90541276 18 + TSS region transcription start site region 30228
Gm24593 3 90548619 to 90548724 105 + snRNA gene predicted gene, 24593
Tssr30229 3 90560317 to 90560332 15 + TSS region transcription start site region 30229
Gm23464 3 90560556 to 90560702 146 - snRNA gene predicted gene, 23464
S100a3 3 90560578 to 90602702 42124 + protein coding gene S100 calcium binding protein A3
Cpgi13467 3 90586945 to 90587222 277 CpG island CpG island 13467
Tssr30230 3 90587255 to 90587271 16 + TSS region transcription start site region 30230
Tssr945 3 90587275 to 90587290 15 + TSS region transcription start site region 945
Tssr30231 3 90588536 to 90588550 14 + TSS region transcription start site region 30231
Tssr30232 3 90589707 to 90589717 10 + TSS region transcription start site region 30232
S100a2 3 90590247 to 90591508 1261 + protein coding gene S100 calcium binding protein A2
Tssr30233 3 90600203 to 90600219 16 + TSS region transcription start site region 30233
Tssr30234 3 90600237 to 90600247 10 + TSS region transcription start site region 30234
Tssr30235 3 90601773 to 90601809 36 + TSS region transcription start site region 30235
Gm42674 3 90601904 to 90605885 3981 + protein coding gene predicted gene 42674
D3Mit28.1 3 90603728 to 90603900 172 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.1
Tssr30236 3 90603767 to 90603771 4 + TSS region transcription start site region 30236
S100a4 3 90603771 to 90606045 2274 + protein coding gene S100 calcium binding protein A4
D3Mit28 3 90603910 to 90604057 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28
D3Dcr15 3 90603921 to 90604032 111 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 15
D3Mit28.2 3 90604013 to 90604162 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.2
Tssr30237 3 90604641 to 90604660 19 + TSS region transcription start site region 30237
Tssr30238 3 90605734 to 90605784 50 + TSS region transcription start site region 30238
Tssr30239 3 90605941 to 90605974 33 + TSS region transcription start site region 30239
Tssr30240 3 90608497 to 90608501 4 + TSS region transcription start site region 30240
S100a5 3 90608523 to 90611780 3257 + protein coding gene S100 calcium binding protein A5
Tssr30241 3 90609379 to 90609395 16 + TSS region transcription start site region 30241
D3Nds7 3 90609578 to 90609764 186 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr30242 3 90612272 to 90612296 24 + TSS region transcription start site region 30242
Tssr30243 3 90612832 to 90612865 33 + TSS region transcription start site region 30243
Tssr30244 3 90612869 to 90612881 12 + TSS region transcription start site region 30244
S100a6 3 90612894 to 90614414 1520 + protein coding gene S100 calcium binding protein A6 (calcyclin)
Tssr30245 3 90612900 to 90612979 79 + TSS region transcription start site region 30245
Cpgi13468 3 90612986 to 90613366 380 CpG island CpG island 13468
Tssr30246 3 90613146 to 90613157 11 + TSS region transcription start site region 30246
Tssr30247 3 90613176 to 90613192 16 + TSS region transcription start site region 30247
Tssr30248 3 90613282 to 90613292 10 + TSS region transcription start site region 30248
Tssr30249 3 90613519 to 90613536 17 + TSS region transcription start site region 30249
Tssr30250 3 90613728 to 90613769 41 + TSS region transcription start site region 30250
Tssr30251 3 90613775 to 90613853 78 + TSS region transcription start site region 30251
Tssr30252 3 90614346 to 90614357 11 + TSS region transcription start site region 30252
Tssr30253 3 90614370 to 90614383 13 + TSS region transcription start site region 30253
Tssr34246 3 90614411 to 90614415 4 - TSS region transcription start site region 34246
Tssr30254 3 90623671 to 90623689 18 + TSS region transcription start site region 30254
Gm19739 3 90651714 to 90651866 152 - pseudogene predicted gene, 19739
Rapop3 3 100556821 to 90603910 -9952911 QTL radiation-induced apoptosis 3