Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90501809-94373789

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604 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chtop 3 90498956 to 90509498 10542 - protein coding gene chromatin target of PRMT1
Tssr34235 3 90506370 to 90506381 11 - TSS region transcription start site region 34235
Tssr34236 3 90508059 to 90508063 4 - TSS region transcription start site region 34236
Tssr34237 3 90508727 to 90508731 4 - TSS region transcription start site region 34237
Cpgi13465 3 90508761 to 90509769 1008 CpG island CpG island 13465
Tssr30207 3 90509077 to 90509105 28 + TSS region transcription start site region 30207
Tssr34238 3 90509456 to 90509506 50 - TSS region transcription start site region 34238
Tssr34239 3 90509517 to 90509528 11 - TSS region transcription start site region 34239
Tssr30208 3 90509640 to 90509686 46 + TSS region transcription start site region 30208
S100a1 3 90511034 to 90514330 3296 - protein coding gene S100 calcium binding protein A1
Tssr34240 3 90511133 to 90511174 41 - TSS region transcription start site region 34240
Tssr34241 3 90512020 to 90512066 46 - TSS region transcription start site region 34241
Cpgi13466 3 90514184 to 90514344 160 CpG island CpG island 13466
Tssr34242 3 90514250 to 90514334 84 - TSS region transcription start site region 34242
Tssr34243 3 90514356 to 90514366 10 - TSS region transcription start site region 34243
Tssr34244 3 90514370 to 90514379 9 - TSS region transcription start site region 34244
Tssr34245 3 90514405 to 90514420 15 - TSS region transcription start site region 34245
S100a13 3 90514435 to 90524581 10146 + protein coding gene S100 calcium binding protein A13
Tssr30209 3 90514918 to 90514976 58 + TSS region transcription start site region 30209
Tssr30210 3 90514984 to 90514998 14 + TSS region transcription start site region 30210
Tssr30211 3 90526774 to 90526779 5 + TSS region transcription start site region 30211
Tssr30212 3 90526825 to 90526832 7 + TSS region transcription start site region 30212
Tssr30213 3 90526856 to 90526859 3 + TSS region transcription start site region 30213
S100a14 3 90526856 to 90528837 1981 + protein coding gene S100 calcium binding protein A14
Tssr30214 3 90526861 to 90526881 20 + TSS region transcription start site region 30214
Tssr30215 3 90527142 to 90527176 34 + TSS region transcription start site region 30215
Tssr30216 3 90527739 to 90527753 14 + TSS region transcription start site region 30216
Tssr30217 3 90537230 to 90537241 11 + TSS region transcription start site region 30217
Tssr30218 3 90537242 to 90537270 28 + TSS region transcription start site region 30218
S100a16 3 90537257 to 90543151 5894 + protein coding gene S100 calcium binding protein A16
Tssr30219 3 90537291 to 90537304 13 + TSS region transcription start site region 30219
Tssr30220 3 90537306 to 90537326 20 + TSS region transcription start site region 30220
Tssr30221 3 90537333 to 90537386 53 + TSS region transcription start site region 30221
Tssr30222 3 90539645 to 90539660 15 + TSS region transcription start site region 30222
Tssr30223 3 90539675 to 90539691 16 + TSS region transcription start site region 30223
Tssr30224 3 90541155 to 90541173 18 + TSS region transcription start site region 30224
Tssr30225 3 90541177 to 90541186 9 + TSS region transcription start site region 30225
Tssr30226 3 90541189 to 90541213 24 + TSS region transcription start site region 30226
Tssr30227 3 90541217 to 90541241 24 + TSS region transcription start site region 30227
Tssr30228 3 90541258 to 90541276 18 + TSS region transcription start site region 30228
Gm24593 3 90548619 to 90548724 105 + snRNA gene predicted gene, 24593
Tssr30229 3 90560317 to 90560332 15 + TSS region transcription start site region 30229
Gm23464 3 90560556 to 90560702 146 - snRNA gene predicted gene, 23464
S100a3 3 90560578 to 90602702 42124 + protein coding gene S100 calcium binding protein A3
Cpgi13467 3 90586945 to 90587222 277 CpG island CpG island 13467
Tssr30230 3 90587255 to 90587271 16 + TSS region transcription start site region 30230
Tssr945 3 90587275 to 90587290 15 + TSS region transcription start site region 945
Tssr30231 3 90588536 to 90588550 14 + TSS region transcription start site region 30231
Tssr30232 3 90589707 to 90589717 10 + TSS region transcription start site region 30232
S100a2 3 90590247 to 90591508 1261 + protein coding gene S100 calcium binding protein A2
Tssr30233 3 90600203 to 90600219 16 + TSS region transcription start site region 30233
Tssr30234 3 90600237 to 90600247 10 + TSS region transcription start site region 30234
Tssr30235 3 90601773 to 90601809 36 + TSS region transcription start site region 30235
Gm42674 3 90601904 to 90605885 3981 + protein coding gene predicted gene 42674
D3Mit28.1 3 90603728 to 90603900 172 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.1
Tssr30236 3 90603767 to 90603771 4 + TSS region transcription start site region 30236
S100a4 3 90603771 to 90606045 2274 + protein coding gene S100 calcium binding protein A4
D3Mit28 3 90603910 to 90604057 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28
D3Dcr15 3 90603921 to 90604032 111 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 15
D3Mit28.2 3 90604013 to 90604162 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.2
Tssr30237 3 90604641 to 90604660 19 + TSS region transcription start site region 30237
Tssr30238 3 90605734 to 90605784 50 + TSS region transcription start site region 30238
Tssr30239 3 90605941 to 90605974 33 + TSS region transcription start site region 30239
Tssr30240 3 90608497 to 90608501 4 + TSS region transcription start site region 30240
S100a5 3 90608523 to 90611780 3257 + protein coding gene S100 calcium binding protein A5
Tssr30241 3 90609379 to 90609395 16 + TSS region transcription start site region 30241
D3Nds7 3 90609578 to 90609764 186 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr30242 3 90612272 to 90612296 24 + TSS region transcription start site region 30242
Tssr30243 3 90612832 to 90612865 33 + TSS region transcription start site region 30243
Tssr30244 3 90612869 to 90612881 12 + TSS region transcription start site region 30244
S100a6 3 90612894 to 90614414 1520 + protein coding gene S100 calcium binding protein A6 (calcyclin)
Tssr30245 3 90612900 to 90612979 79 + TSS region transcription start site region 30245
Cpgi13468 3 90612986 to 90613366 380 CpG island CpG island 13468
Tssr30246 3 90613146 to 90613157 11 + TSS region transcription start site region 30246
Tssr30247 3 90613176 to 90613192 16 + TSS region transcription start site region 30247
Tssr30248 3 90613282 to 90613292 10 + TSS region transcription start site region 30248
Tssr30249 3 90613519 to 90613536 17 + TSS region transcription start site region 30249
Tssr30250 3 90613728 to 90613769 41 + TSS region transcription start site region 30250
Tssr30251 3 90613775 to 90613853 78 + TSS region transcription start site region 30251
Tssr30252 3 90614346 to 90614357 11 + TSS region transcription start site region 30252
Tssr30253 3 90614370 to 90614383 13 + TSS region transcription start site region 30253
Tssr34246 3 90614411 to 90614415 4 - TSS region transcription start site region 34246
Tssr30254 3 90623671 to 90623689 18 + TSS region transcription start site region 30254
Gm19739 3 90651714 to 90651866 152 - pseudogene predicted gene, 19739
S100a7a 3 90654017 to 90658669 4652 + protein coding gene S100 calcium binding protein A7A
Tssr30255 3 90654082 to 90654093 11 + TSS region transcription start site region 30255
Tssr30256 3 90654103 to 90654106 3 + TSS region transcription start site region 30256
Tssr30257 3 90654109 to 90654123 14 + TSS region transcription start site region 30257
Tssr30258 3 90654136 to 90654139 3 + TSS region transcription start site region 30258
Tssr30259 3 90654140 to 90654149 9 + TSS region transcription start site region 30259
Tssr30260 3 90654162 to 90654182 20 + TSS region transcription start site region 30260
Tssr30261 3 90654191 to 90654205 14 + TSS region transcription start site region 30261
Tssr30262 3 90654223 to 90654237 14 + TSS region transcription start site region 30262
Tssr30263 3 90654253 to 90654279 26 + TSS region transcription start site region 30263
Tssr34247 3 90659423 to 90659436 13 - TSS region transcription start site region 34247
Tssr34248 3 90659441 to 90659448 7 - TSS region transcription start site region 34248
Tssr30264 3 90659651 to 90659660 9 + TSS region transcription start site region 30264
Tssr946 3 90659950 to 90659990 40 + TSS region transcription start site region 946
Tssr30265 3 90669063 to 90669076 13 + TSS region transcription start site region 30265
S100a8 3 90669071 to 90670034 963 + protein coding gene S100 calcium binding protein A8 (calgranulin A)
Tssr30266 3 90669533 to 90669574 41 + TSS region transcription start site region 30266
Tssr30267 3 90669929 to 90669940 11 + TSS region transcription start site region 30267
Tssr947 3 90669953 to 90669966 13 - TSS region transcription start site region 947
Tssr34249 3 90670027 to 90670033 6 - TSS region transcription start site region 34249
Tssr34250 3 90678726 to 90678738 12 - TSS region transcription start site region 34250
Tssr34251 3 90682754 to 90682763 9 - TSS region transcription start site region 34251
Tssr948 3 90687108 to 90687115 7 + TSS region transcription start site region 948
Tssr30268 3 90692631 to 90692638 7 + TSS region transcription start site region 30268
S100a9 3 90692632 to 90695721 3089 - protein coding gene S100 calcium binding protein A9 (calgranulin B)
Tssr34252 3 90692717 to 90692733 16 - TSS region transcription start site region 34252
Tssr30269 3 90692717 to 90692749 32 + TSS region transcription start site region 30269
Tssr949 3 90692777 to 90692790 13 + TSS region transcription start site region 949
Tssr34253 3 90692835 to 90692865 30 - TSS region transcription start site region 34253
Tssr950 3 90692875 to 90692921 46 - TSS region transcription start site region 950
Tssr30270 3 90692877 to 90692897 20 + TSS region transcription start site region 30270
Tssr951 3 90694171 to 90694211 40 - TSS region transcription start site region 951
Tssr34254 3 90694954 to 90694973 19 - TSS region transcription start site region 34254
Tssr34255 3 90695049 to 90695067 18 - TSS region transcription start site region 34255
Tssr952 3 90695122 to 90695154 32 + TSS region transcription start site region 952
Tssr34256 3 90695124 to 90695134 10 - TSS region transcription start site region 34256
Tssr953 3 90695168 to 90695173 5 - TSS region transcription start site region 953
Tssr34257 3 90695184 to 90695243 59 - TSS region transcription start site region 34257
Tssr34258 3 90695245 to 90695325 80 - TSS region transcription start site region 34258
Tssr34259 3 90695372 to 90695381 9 - TSS region transcription start site region 34259
Tssr34260 3 90695684 to 90695697 13 - TSS region transcription start site region 34260
Tssr34261 3 90695706 to 90695721 15 - TSS region transcription start site region 34261
Tssr34262 3 90695756 to 90695764 8 - TSS region transcription start site region 34262
Tssr34263 3 90695788 to 90695796 8 - TSS region transcription start site region 34263
Tssr954 3 90695993 to 90696000 7 + TSS region transcription start site region 954
Tssr30271 3 90696034 to 90696041 7 + TSS region transcription start site region 30271
Gm42579 3 90708881 to 90709614 733 - pseudogene predicted gene 42579
Gm5284 3 90722611 to 90723513 902 - pseudogene predicted gene 5284
Tssr30272 3 90725887 to 90725909 22 + TSS region transcription start site region 30272
Pglyrp4 3 90726906 to 90741517 14611 + protein coding gene peptidoglycan recognition protein 4
Gm35013 3 90758732 to 90759563 831 + pseudogene predicted gene, 35013
Gm5104 3 90759367 to 90761313 1946 + pseudogene predicted gene 5104
Gm5849 3 90775946 to 90777876 1930 - protein coding gene predicted gene 5849
Gm43235 3 90846372 to 90848254 1882 - pseudogene predicted gene 43235
Tssr955 3 90854384 to 90854385 1 - TSS region transcription start site region 955
Tssr34264 3 90889125 to 90889131 6 - TSS region transcription start site region 34264
Gm9023 3 91010083 to 91017184 7101 - pseudogene predicted gene 9023
Gm7166 3 91039573 to 91039875 302 + pseudogene predicted gene 7166
4930529C04Rik 3 91071662 to 91075192 3530 + pseudogene RIKEN cDNA 4930529C04 gene
9130204L05Rik 3 91088137 to 91090803 2666 - protein coding gene RIKEN cDNA 9130204L05 gene
Tssr30273 3 91114357 to 91114361 4 + TSS region transcription start site region 30273
Tssr30274 3 91278435 to 91278439 4 + TSS region transcription start site region 30274
Gm36323 3 91628563 to 91630704 2141 - protein coding gene predicted gene, 36323
Gm35185 3 91738353 to 91740494 2141 - protein coding gene predicted gene, 35185
Gm46837 3 91914377 to 91916526 2149 + pseudogene predicted gene, 46837
Gm17742 3 91996114 to 91997246 1132 + pseudogene predicted gene, 17742
Gm23697 3 92010756 to 92010865 109 - miRNA gene predicted gene, 23697
Tssr30275 3 92012428 to 92012462 34 + TSS region transcription start site region 30275
Pglyrp3 3 92014583 to 92031582 16999 + protein coding gene peptidoglycan recognition protein 3
Cpgi13469 3 92024448 to 92024843 395 CpG island CpG island 13469
Tssr30276 3 92024481 to 92024524 43 + TSS region transcription start site region 30276
Tssr30277 3 92024528 to 92024539 11 + TSS region transcription start site region 30277
Tssr30278 3 92024546 to 92024561 15 + TSS region transcription start site region 30278
Mif-ps3 3 92024567 to 92024911 344 + pseudogene macrophage migration inhibitory factor, pseudogene 3
Gm25145 3 92061397 to 92061506 109 - miRNA gene predicted gene, 25145
Lor 3 92080271 to 92083142 2871 - protein coding gene loricrin
Tssr34265 3 92080301 to 92080347 46 - TSS region transcription start site region 34265
Tssr34266 3 92080385 to 92080412 27 - TSS region transcription start site region 34266
Cpgi13470 3 92080390 to 92082191 1801 CpG island CpG island 13470
Tssr34267 3 92080913 to 92080931 18 - TSS region transcription start site region 34267
Tssr34268 3 92081353 to 92081366 13 - TSS region transcription start site region 34268
Tssr34269 3 92081643 to 92081659 16 - TSS region transcription start site region 34269
Tssr34270 3 92083132 to 92083147 15 - TSS region transcription start site region 34270
Gm43736 3 92097351 to 92099631 2280 + lincRNA gene predicted gene 43736
4930511M18Rik 3 92102578 to 92142736 40158 - sense overlapping lncRNA gene RIKEN cDNA 4930511M18 gene
Tssr30279 3 92113186 to 92113199 13 + TSS region transcription start site region 30279
Gm43735 3 92113192 to 92119317 6125 + antisense lncRNA gene predicted gene 43735
Prr9 3 92122204 to 92123947 1743 - protein coding gene proline rich 9
Tssr34271 3 92123943 to 92123953 10 - TSS region transcription start site region 34271
Lelp1 3 92134997 to 92142744 7747 - protein coding gene late cornified envelope-like proline-rich 1
Tssr34272 3 92142738 to 92142766 28 - TSS region transcription start site region 34272
Tssr30280 3 92170212 to 92170222 10 + TSS region transcription start site region 30280
Gm35439 3 92170221 to 92177907 7686 + lincRNA gene predicted gene, 35439
Tssr30281 3 92194326 to 92194328 2 + TSS region transcription start site region 30281
Sprr2a1 3 92215799 to 92221911 6112 + protein coding gene small proline-rich protein 2A1
Gm5850 3 92227469 to 92228674 1205 - pseudogene predicted gene 5850
Gm37087 3 92242933 to 92246241 3308 - unclassified gene predicted gene, 37087
Sprr2a2 3 92250647 to 92257304 6657 + protein coding gene small proline-rich protein 2A2
Gm5851 3 92262271 to 92263474 1203 - pseudogene predicted gene 5851
Gm37752 3 92277725 to 92281033 3308 - unclassified gene predicted gene, 37752
Sprr2a3 3 92285304 to 92289264 3960 + protein coding gene small proline-rich protein 2A3
Sprr2b 3 92316705 to 92318085 1380 + protein coding gene small proline-rich protein 2B
Gm37428 3 92320911 to 92321047 136 + pseudogene predicted gene, 37428
Sprr2c-ps 3 92326599 to 92326829 230 + pseudogene small proline-rich protein 2C, pseudogene
Tssr30282 3 92339074 to 92339081 7 + TSS region transcription start site region 30282
Tssr30283 3 92339132 to 92339146 14 + TSS region transcription start site region 30283
Sprr2d 3 92339140 to 92340873 1733 + protein coding gene small proline-rich protein 2D
Tssr30284 3 92352141 to 92352144 3 + TSS region transcription start site region 30284
Sprr2e 3 92352143 to 92353449 1306 + protein coding gene small proline-rich protein 2E
Tssr30285 3 92365148 to 92365156 8 + TSS region transcription start site region 30285
Tssr30286 3 92365178 to 92365193 15 + TSS region transcription start site region 30286
Sprr2f 3 92365187 to 92366442 1255 + protein coding gene small proline-rich protein 2F
Tssr30287 3 92365881 to 92365890 9 + TSS region transcription start site region 30287
Tssr30288 3 92366036 to 92366046 10 + TSS region transcription start site region 30288
Tssr30289 3 92373847 to 92373858 11 + TSS region transcription start site region 30289
Tssr30290 3 92373875 to 92373893 18 + TSS region transcription start site region 30290