Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90306217-90776241

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Gatad2b 3 90293285 to 90363405 70120 + protein coding gene GATA zinc finger domain containing 2B
Gm45477 3 90311518 to 90317015 5497 + unclassified gene predicted gene 45477
Gm45354 3 90335395 to 90337951 2556 + unclassified gene predicted gene 45354
Tssr30194 3 90357988 to 90358011 23 + TSS region transcription start site region 30194
Tssr30195 3 90359338 to 90359352 14 + TSS region transcription start site region 30195
Tssr30196 3 90359492 to 90359508 16 + TSS region transcription start site region 30196
Tssr30197 3 90359591 to 90359610 19 + TSS region transcription start site region 30197
Tssr30198 3 90359626 to 90359639 13 + TSS region transcription start site region 30198
D3Mit232 3 90359629 to 90359778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 232
Tssr30199 3 90363089 to 90363094 5 + TSS region transcription start site region 30199
Tssr30200 3 90363160 to 90363164 4 + TSS region transcription start site region 30200
Slc27a3 3 90385239 to 90389938 4699 - protein coding gene solute carrier family 27 (fatty acid transporter), member 3
Cpgi13459 3 90388737 to 90390342 1605 CpG island CpG island 13459
Tssr34206 3 90389281 to 90389319 38 - TSS region transcription start site region 34206
Tssr34207 3 90389849 to 90389862 13 - TSS region transcription start site region 34207
Tssr34208 3 90389884 to 90389924 40 - TSS region transcription start site region 34208
Tssr34209 3 90389936 to 90389958 22 - TSS region transcription start site region 34209
Tssr34210 3 90389963 to 90389976 13 - TSS region transcription start site region 34210
Ints3 3 90391388 to 90433622 42234 - protein coding gene integrator complex subunit 3
Tssr34211 3 90433014 to 90433025 11 - TSS region transcription start site region 34211
Cpgi13460 3 90433061 to 90434007 946 CpG island CpG island 13460
Tssr34212 3 90433464 to 90433499 35 - TSS region transcription start site region 34212
Tssr34213 3 90433523 to 90433534 11 - TSS region transcription start site region 34213
Tssr34214 3 90433553 to 90433565 12 - TSS region transcription start site region 34214
Tssr34215 3 90433582 to 90433600 18 - TSS region transcription start site region 34215
Tssr34216 3 90433603 to 90433619 16 - TSS region transcription start site region 34216
Tssr30201 3 90433791 to 90433820 29 + TSS region transcription start site region 30201
Npr1 3 90450591 to 90465866 15275 - protein coding gene natriuretic peptide receptor 1
Tssr30202 3 90450953 to 90450967 14 + TSS region transcription start site region 30202
Tssr34217 3 90451386 to 90451395 9 - TSS region transcription start site region 34217
Tssr34218 3 90451409 to 90451484 75 - TSS region transcription start site region 34218
Gm16048 3 90451583 to 90457095 5512 + antisense lncRNA gene predicted gene 16048
Cpgi13461 3 90455054 to 90455231 177 CpG island CpG island 13461
Tssr34219 3 90455089 to 90455112 23 - TSS region transcription start site region 34219
Cpgi13462 3 90464535 to 90466386 1851 CpG island CpG island 13462
Tssr34220 3 90464539 to 90464613 74 - TSS region transcription start site region 34220
Tssr34221 3 90464630 to 90464640 10 - TSS region transcription start site region 34221
Tssr34222 3 90464655 to 90464663 8 - TSS region transcription start site region 34222
Tssr34223 3 90464665 to 90464676 11 - TSS region transcription start site region 34223
Tssr30203 3 90464713 to 90464726 13 + TSS region transcription start site region 30203
Tssr34224 3 90465610 to 90465620 10 - TSS region transcription start site region 34224
Tssr34225 3 90465793 to 90465796 3 - TSS region transcription start site region 34225
Tssr34226 3 90465814 to 90465819 5 - TSS region transcription start site region 34226
Tssr34227 3 90465832 to 90465846 14 - TSS region transcription start site region 34227
Tssr34228 3 90465858 to 90465874 16 - TSS region transcription start site region 34228
Tssr30204 3 90466085 to 90466090 5 + TSS region transcription start site region 30204
Tssr34229 3 90466329 to 90466358 29 - TSS region transcription start site region 34229
Tssr34230 3 90466362 to 90466404 42 - TSS region transcription start site region 34230
Gm43595 3 90468898 to 90470959 2061 - pseudogene predicted gene 43595
Cpgi13463 3 90475845 to 90476543 698 CpG island CpG island 13463
n-TMcat11 3 90475860 to 90475931 71 - tRNA gene nuclear encoded tRNA methionine 11 (anticodon CAT)
Tssr30205 3 90476121 to 90476220 99 + TSS region transcription start site region 30205
Ilf2 3 90476201 to 90488379 12178 + protein coding gene interleukin enhancer binding factor 2
Tssr30206 3 90484531 to 90484539 8 + TSS region transcription start site region 30206
Tssr944 3 90487933 to 90487937 4 + TSS region transcription start site region 944
Snapin 3 90488026 to 90491013 2987 - protein coding gene SNAP-associated protein
Tssr34231 3 90489143 to 90489157 14 - TSS region transcription start site region 34231
Tssr34232 3 90490717 to 90490767 50 - TSS region transcription start site region 34232
Cpgi13464 3 90490752 to 90491182 430 CpG island CpG island 13464
Tssr34233 3 90490782 to 90490790 8 - TSS region transcription start site region 34233
Tssr34234 3 90490975 to 90491038 63 - TSS region transcription start site region 34234
Chtop 3 90498956 to 90509498 10542 - protein coding gene chromatin target of PRMT1
Tssr34235 3 90506370 to 90506381 11 - TSS region transcription start site region 34235
Tssr34236 3 90508059 to 90508063 4 - TSS region transcription start site region 34236
Tssr34237 3 90508727 to 90508731 4 - TSS region transcription start site region 34237
Cpgi13465 3 90508761 to 90509769 1008 CpG island CpG island 13465
Tssr30207 3 90509077 to 90509105 28 + TSS region transcription start site region 30207
Tssr34238 3 90509456 to 90509506 50 - TSS region transcription start site region 34238
Tssr34239 3 90509517 to 90509528 11 - TSS region transcription start site region 34239
Tssr30208 3 90509640 to 90509686 46 + TSS region transcription start site region 30208
S100a1 3 90511034 to 90514330 3296 - protein coding gene S100 calcium binding protein A1
Tssr34240 3 90511133 to 90511174 41 - TSS region transcription start site region 34240
Tssr34241 3 90512020 to 90512066 46 - TSS region transcription start site region 34241
Cpgi13466 3 90514184 to 90514344 160 CpG island CpG island 13466
Tssr34242 3 90514250 to 90514334 84 - TSS region transcription start site region 34242
Tssr34243 3 90514356 to 90514366 10 - TSS region transcription start site region 34243
Tssr34244 3 90514370 to 90514379 9 - TSS region transcription start site region 34244
Tssr34245 3 90514405 to 90514420 15 - TSS region transcription start site region 34245
S100a13 3 90514435 to 90524581 10146 + protein coding gene S100 calcium binding protein A13
Tssr30209 3 90514918 to 90514976 58 + TSS region transcription start site region 30209
Tssr30210 3 90514984 to 90514998 14 + TSS region transcription start site region 30210
Tssr30211 3 90526774 to 90526779 5 + TSS region transcription start site region 30211
Tssr30212 3 90526825 to 90526832 7 + TSS region transcription start site region 30212
Tssr30213 3 90526856 to 90526859 3 + TSS region transcription start site region 30213
S100a14 3 90526856 to 90528837 1981 + protein coding gene S100 calcium binding protein A14
Tssr30214 3 90526861 to 90526881 20 + TSS region transcription start site region 30214
Tssr30215 3 90527142 to 90527176 34 + TSS region transcription start site region 30215
Tssr30216 3 90527739 to 90527753 14 + TSS region transcription start site region 30216
Tssr30217 3 90537230 to 90537241 11 + TSS region transcription start site region 30217
Tssr30218 3 90537242 to 90537270 28 + TSS region transcription start site region 30218
S100a16 3 90537257 to 90543151 5894 + protein coding gene S100 calcium binding protein A16
Tssr30219 3 90537291 to 90537304 13 + TSS region transcription start site region 30219
Tssr30220 3 90537306 to 90537326 20 + TSS region transcription start site region 30220
Tssr30221 3 90537333 to 90537386 53 + TSS region transcription start site region 30221
Tssr30222 3 90539645 to 90539660 15 + TSS region transcription start site region 30222
Tssr30223 3 90539675 to 90539691 16 + TSS region transcription start site region 30223
Tssr30224 3 90541155 to 90541173 18 + TSS region transcription start site region 30224
Tssr30225 3 90541177 to 90541186 9 + TSS region transcription start site region 30225
Tssr30226 3 90541189 to 90541213 24 + TSS region transcription start site region 30226
Tssr30227 3 90541217 to 90541241 24 + TSS region transcription start site region 30227
Tssr30228 3 90541258 to 90541276 18 + TSS region transcription start site region 30228
Gm24593 3 90548619 to 90548724 105 + snRNA gene predicted gene, 24593
Tssr30229 3 90560317 to 90560332 15 + TSS region transcription start site region 30229
Gm23464 3 90560556 to 90560702 146 - snRNA gene predicted gene, 23464
S100a3 3 90560578 to 90602702 42124 + protein coding gene S100 calcium binding protein A3
Cpgi13467 3 90586945 to 90587222 277 CpG island CpG island 13467
Tssr30230 3 90587255 to 90587271 16 + TSS region transcription start site region 30230
Tssr945 3 90587275 to 90587290 15 + TSS region transcription start site region 945
Tssr30231 3 90588536 to 90588550 14 + TSS region transcription start site region 30231
Tssr30232 3 90589707 to 90589717 10 + TSS region transcription start site region 30232
S100a2 3 90590247 to 90591508 1261 + protein coding gene S100 calcium binding protein A2
Tssr30233 3 90600203 to 90600219 16 + TSS region transcription start site region 30233
Tssr30234 3 90600237 to 90600247 10 + TSS region transcription start site region 30234
Tssr30235 3 90601773 to 90601809 36 + TSS region transcription start site region 30235
Gm42674 3 90601904 to 90605885 3981 + protein coding gene predicted gene 42674
D3Mit28.1 3 90603728 to 90603900 172 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.1
Tssr30236 3 90603767 to 90603771 4 + TSS region transcription start site region 30236
S100a4 3 90603771 to 90606045 2274 + protein coding gene S100 calcium binding protein A4
D3Mit28 3 90603910 to 90604057 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28
D3Dcr15 3 90603921 to 90604032 111 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 15
D3Mit28.2 3 90604013 to 90604162 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.2
Tssr30237 3 90604641 to 90604660 19 + TSS region transcription start site region 30237
Tssr30238 3 90605734 to 90605784 50 + TSS region transcription start site region 30238
Tssr30239 3 90605941 to 90605974 33 + TSS region transcription start site region 30239
Tssr30240 3 90608497 to 90608501 4 + TSS region transcription start site region 30240
S100a5 3 90608523 to 90611780 3257 + protein coding gene S100 calcium binding protein A5
Tssr30241 3 90609379 to 90609395 16 + TSS region transcription start site region 30241
D3Nds7 3 90609578 to 90609764 186 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 3
Tssr30242 3 90612272 to 90612296 24 + TSS region transcription start site region 30242
Tssr30243 3 90612832 to 90612865 33 + TSS region transcription start site region 30243
Tssr30244 3 90612869 to 90612881 12 + TSS region transcription start site region 30244
S100a6 3 90612894 to 90614414 1520 + protein coding gene S100 calcium binding protein A6 (calcyclin)
Tssr30245 3 90612900 to 90612979 79 + TSS region transcription start site region 30245
Cpgi13468 3 90612986 to 90613366 380 CpG island CpG island 13468
Tssr30246 3 90613146 to 90613157 11 + TSS region transcription start site region 30246
Tssr30247 3 90613176 to 90613192 16 + TSS region transcription start site region 30247
Tssr30248 3 90613282 to 90613292 10 + TSS region transcription start site region 30248
Tssr30249 3 90613519 to 90613536 17 + TSS region transcription start site region 30249
Tssr30250 3 90613728 to 90613769 41 + TSS region transcription start site region 30250
Tssr30251 3 90613775 to 90613853 78 + TSS region transcription start site region 30251
Tssr30252 3 90614346 to 90614357 11 + TSS region transcription start site region 30252
Tssr30253 3 90614370 to 90614383 13 + TSS region transcription start site region 30253
Tssr34246 3 90614411 to 90614415 4 - TSS region transcription start site region 34246
Tssr30254 3 90623671 to 90623689 18 + TSS region transcription start site region 30254
Gm19739 3 90651714 to 90651866 152 - pseudogene predicted gene, 19739
S100a7a 3 90654017 to 90658669 4652 + protein coding gene S100 calcium binding protein A7A
Tssr30255 3 90654082 to 90654093 11 + TSS region transcription start site region 30255
Tssr30256 3 90654103 to 90654106 3 + TSS region transcription start site region 30256
Tssr30257 3 90654109 to 90654123 14 + TSS region transcription start site region 30257
Tssr30258 3 90654136 to 90654139 3 + TSS region transcription start site region 30258
Tssr30259 3 90654140 to 90654149 9 + TSS region transcription start site region 30259
Tssr30260 3 90654162 to 90654182 20 + TSS region transcription start site region 30260
Tssr30261 3 90654191 to 90654205 14 + TSS region transcription start site region 30261
Tssr30262 3 90654223 to 90654237 14 + TSS region transcription start site region 30262
Tssr30263 3 90654253 to 90654279 26 + TSS region transcription start site region 30263
Tssr34247 3 90659423 to 90659436 13 - TSS region transcription start site region 34247
Tssr34248 3 90659441 to 90659448 7 - TSS region transcription start site region 34248
Tssr30264 3 90659651 to 90659660 9 + TSS region transcription start site region 30264
Tssr946 3 90659950 to 90659990 40 + TSS region transcription start site region 946
Tssr30265 3 90669063 to 90669076 13 + TSS region transcription start site region 30265
S100a8 3 90669071 to 90670034 963 + protein coding gene S100 calcium binding protein A8 (calgranulin A)
Tssr30266 3 90669533 to 90669574 41 + TSS region transcription start site region 30266
Tssr30267 3 90669929 to 90669940 11 + TSS region transcription start site region 30267
Tssr947 3 90669953 to 90669966 13 - TSS region transcription start site region 947
Tssr34249 3 90670027 to 90670033 6 - TSS region transcription start site region 34249
Tssr34250 3 90678726 to 90678738 12 - TSS region transcription start site region 34250
Tssr34251 3 90682754 to 90682763 9 - TSS region transcription start site region 34251
Tssr948 3 90687108 to 90687115 7 + TSS region transcription start site region 948
Tssr30268 3 90692631 to 90692638 7 + TSS region transcription start site region 30268
S100a9 3 90692632 to 90695721 3089 - protein coding gene S100 calcium binding protein A9 (calgranulin B)
Tssr30269 3 90692717 to 90692749 32 + TSS region transcription start site region 30269
Tssr34252 3 90692717 to 90692733 16 - TSS region transcription start site region 34252
Tssr949 3 90692777 to 90692790 13 + TSS region transcription start site region 949
Tssr34253 3 90692835 to 90692865 30 - TSS region transcription start site region 34253
Tssr950 3 90692875 to 90692921 46 - TSS region transcription start site region 950
Tssr30270 3 90692877 to 90692897 20 + TSS region transcription start site region 30270
Tssr951 3 90694171 to 90694211 40 - TSS region transcription start site region 951
Tssr34254 3 90694954 to 90694973 19 - TSS region transcription start site region 34254
Tssr34255 3 90695049 to 90695067 18 - TSS region transcription start site region 34255
Tssr952 3 90695122 to 90695154 32 + TSS region transcription start site region 952
Tssr34256 3 90695124 to 90695134 10 - TSS region transcription start site region 34256
Tssr953 3 90695168 to 90695173 5 - TSS region transcription start site region 953
Tssr34257 3 90695184 to 90695243 59 - TSS region transcription start site region 34257
Tssr34258 3 90695245 to 90695325 80 - TSS region transcription start site region 34258
Tssr34259 3 90695372 to 90695381 9 - TSS region transcription start site region 34259
Tssr34260 3 90695684 to 90695697 13 - TSS region transcription start site region 34260
Tssr34261 3 90695706 to 90695721 15 - TSS region transcription start site region 34261
Tssr34262 3 90695756 to 90695764 8 - TSS region transcription start site region 34262
Tssr34263 3 90695788 to 90695796 8 - TSS region transcription start site region 34263
Tssr954 3 90695993 to 90696000 7 + TSS region transcription start site region 954
Tssr30271 3 90696034 to 90696041 7 + TSS region transcription start site region 30271
Gm42579 3 90708881 to 90709614 733 - pseudogene predicted gene 42579
Gm5284 3 90722611 to 90723513 902 - pseudogene predicted gene 5284
Tssr30272 3 90725887 to 90725909 22 + TSS region transcription start site region 30272
Pglyrp4 3 90726906 to 90741517 14611 + protein coding gene peptidoglycan recognition protein 4
Gm35013 3 90758732 to 90759563 831 + pseudogene predicted gene, 35013
Gm5104 3 90759367 to 90761313 1946 + pseudogene predicted gene 5104
Gm5849 3 90775946 to 90777876 1930 - protein coding gene predicted gene 5849
Rapop3 3 100556821 to 90603910 -9952911 QTL radiation-induced apoptosis 3