Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:9009088-9639228

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46832 3 9027570 to 9029901 2331 + lncRNA gene predicted gene, 46832
Tssr28339 3 9028360 to 9028371 11 + TSS region transcription start site region 28339
Tssr28340 3 9034090 to 9034117 27 + TSS region transcription start site region 28340
Gm37616 3 9047171 to 9047492 321 - pseudogene predicted gene, 37616
4930539M17Rik 3 9061964 to 9071074 9110 + lincRNA gene RIKEN cDNA 4930539M17 gene
Gm8860 3 9072767 to 9073211 444 + pseudogene predicted gene 8860
Gm41996 3 9157271 to 9174711 17440 - lncRNA gene predicted gene, 41996
Gm33018 3 9177692 to 9182437 4745 - lncRNA gene predicted gene, 33018
Cpgi12970 3 9249735 to 9252217 2482 CpG island CpG island 12970
Tssr28341 3 9250012 to 9250024 12 + TSS region transcription start site region 28341
Tssr28342 3 9250036 to 9250047 11 + TSS region transcription start site region 28342
Zbtb10 3 9250602 to 9285333 34731 + protein coding gene zinc finger and BTB domain containing 10
D3Mit166 3 9266659 to 9266796 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 166
Gm41997 3 9302688 to 9343835 41147 - lncRNA gene predicted gene, 41997
D3Mit177 3 9324088 to 9324228 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 177
Cpgi12971 3 9334234 to 9334513 279 CpG island CpG island 12971
Cpgi12972 3 9346848 to 9347257 409 CpG island CpG island 12972
Cpgi12973 3 9365252 to 9365557 305 CpG island CpG island 12973
Gm22604 3 9402175 to 9402485 310 + unclassified non-coding RNA gene predicted gene, 22604
Tssr28343 3 9402994 to 9403027 33 + TSS region transcription start site region 28343
Tssr28344 3 9403049 to 9403092 43 + TSS region transcription start site region 28344
C030034L19Rik 3 9403078 to 9413903 10825 + lincRNA gene RIKEN cDNA C030034L19 gene
Tssr28345 3 9403111 to 9403130 19 + TSS region transcription start site region 28345
Zfp704 3 9427020 to 9610085 183065 - protein coding gene zinc finger protein 704
Tssr32577 3 9443912 to 9443914 2 - TSS region transcription start site region 32577
Gm38001 3 9496168 to 9499928 3760 + unclassified gene predicted gene, 38001
Cpgi12974 3 9608594 to 9610516 1922 CpG island CpG island 12974
Tssr28346 3 9608803 to 9608824 21 + TSS region transcription start site region 28346
Tssr28347 3 9608826 to 9608841 15 + TSS region transcription start site region 28347
Tssr32578 3 9610033 to 9610040 7 - TSS region transcription start site region 32578
Tssr32579 3 9610074 to 9610086 12 - TSS region transcription start site region 32579
Tssr32580 3 9610090 to 9610124 34 - TSS region transcription start site region 32580
Tssr32581 3 9610233 to 9610247 14 - TSS region transcription start site region 32581
Tssr32582 3 9623519 to 9623528 9 - TSS region transcription start site region 32582
Cpgi12975 3 9629957 to 9630108 151 CpG island CpG island 12975