Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:90078497-91138501

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288 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
Tpm3 3 90072651 to 90100902 28251 + protein coding gene tropomyosin 3, gamma
Cpgi13450 3 90079272 to 90080569 1297 CpG island CpG island 13450
Tssr30155 3 90079524 to 90079537 13 + TSS region transcription start site region 30155
Tssr30156 3 90079546 to 90079565 19 + TSS region transcription start site region 30156
Tssr30157 3 90079619 to 90079664 45 + TSS region transcription start site region 30157
Tssr30158 3 90080485 to 90080498 13 + TSS region transcription start site region 30158
D3Ertd34e 3 90082358 to 90082579 221 DNA segment DNA segment, Chr 3, ERATO Doi 34, expressed
Tssr30159 3 90086342 to 90086353 11 + TSS region transcription start site region 30159
Tssr30160 3 90087415 to 90087439 24 + TSS region transcription start site region 30160
Tssr30161 3 90088093 to 90088097 4 + TSS region transcription start site region 30161
Tssr30162 3 90104128 to 90104143 15 + TSS region transcription start site region 30162
Nup210l 3 90104132 to 90212048 107916 + protein coding gene nucleoporin 210-like
Tssr30163 3 90104147 to 90104152 5 + TSS region transcription start site region 30163
Tssr30164 3 90104154 to 90104165 11 + TSS region transcription start site region 30164
Gm34865 3 90124651 to 90127116 2465 + lncRNA gene predicted gene, 34865
Gm23723 3 90126535 to 90126666 131 + snoRNA gene predicted gene, 23723
Gm43712 3 90126767 to 90127057 290 + pseudogene predicted gene 43712
Gm24185 3 90198682 to 90198786 104 + snRNA gene predicted gene, 24185
Rps27 3 90212667 to 90213648 981 - protein coding gene ribosomal protein S27
Cpgi13451 3 90213313 to 90213944 631 CpG island CpG island 13451
Tssr34192 3 90213577 to 90213630 53 - TSS region transcription start site region 34192
Tssr34193 3 90213636 to 90213670 34 - TSS region transcription start site region 34193
Rab13 3 90213715 to 90226387 12672 + protein coding gene RAB13, member RAS oncogene family
Tssr30165 3 90220747 to 90220773 26 + TSS region transcription start site region 30165
Tssr30166 3 90220783 to 90220830 47 + TSS region transcription start site region 30166
Tssr30167 3 90220856 to 90220867 11 + TSS region transcription start site region 30167
Tssr30168 3 90220871 to 90220877 6 + TSS region transcription start site region 30168
Tssr30169 3 90220881 to 90220897 16 + TSS region transcription start site region 30169
Tssr943 3 90231075 to 90231081 6 + TSS region transcription start site region 943
Cpgi13452 3 90231386 to 90232263 877 CpG island CpG island 13452
Tssr30170 3 90231588 to 90231663 75 + TSS region transcription start site region 30170
Jtb 3 90231597 to 90235838 4241 + protein coding gene jumping translocation breakpoint
Tssr30171 3 90231665 to 90231708 43 + TSS region transcription start site region 30171
Creb3l4 3 90237500 to 90243512 6012 - protein coding gene cAMP responsive element binding protein 3-like 4
Tssr34194 3 90238790 to 90238805 15 - TSS region transcription start site region 34194
Tssr34195 3 90238825 to 90238845 20 - TSS region transcription start site region 34195
Tssr34196 3 90242492 to 90242554 62 - TSS region transcription start site region 34196
Tssr34197 3 90242556 to 90242567 11 - TSS region transcription start site region 34197
Cpgi13453 3 90242744 to 90242907 163 CpG island CpG island 13453
Tssr34198 3 90243061 to 90243072 11 - TSS region transcription start site region 34198
Tssr34199 3 90243073 to 90243109 36 - TSS region transcription start site region 34199
Cpgi13454 3 90247889 to 90248552 663 CpG island CpG island 13454
Slc39a1 3 90248192 to 90253613 5421 + protein coding gene solute carrier family 39 (zinc transporter), member 1
Tssr30172 3 90248195 to 90248228 33 + TSS region transcription start site region 30172
Tssr30173 3 90248522 to 90248533 11 + TSS region transcription start site region 30173
Tssr34200 3 90248764 to 90248776 12 - TSS region transcription start site region 34200
Tssr30174 3 90248831 to 90248842 11 + TSS region transcription start site region 30174
Tssr30175 3 90248857 to 90248870 13 + TSS region transcription start site region 30175
Tssr30176 3 90248885 to 90248932 47 + TSS region transcription start site region 30176
Tssr30177 3 90248962 to 90248971 9 + TSS region transcription start site region 30177
Tssr30178 3 90253122 to 90253124 2 + TSS region transcription start site region 30178
Cpgi13455 3 90253949 to 90254836 887 CpG island CpG island 13455
Tssr34201 3 90254078 to 90254092 14 - TSS region transcription start site region 34201
Crtc2 3 90254163 to 90264125 9962 + protein coding gene CREB regulated transcription coactivator 2
Tssr30179 3 90254241 to 90254252 11 + TSS region transcription start site region 30179
Tssr30180 3 90254259 to 90254332 73 + TSS region transcription start site region 30180
Tssr30181 3 90254344 to 90254363 19 + TSS region transcription start site region 30181
Tssr30182 3 90260282 to 90260285 3 + TSS region transcription start site region 30182
Tssr30183 3 90260961 to 90260975 14 + TSS region transcription start site region 30183
Cpgi13456 3 90264920 to 90266195 1275 CpG island CpG island 13456
Tssr30184 3 90264967 to 90264988 21 + TSS region transcription start site region 30184
Dennd4b 3 90265185 to 90280669 15484 + protein coding gene DENN/MADD domain containing 4B
Tssr34202 3 90265508 to 90265575 67 - TSS region transcription start site region 34202
Tssr30185 3 90265919 to 90265938 19 + TSS region transcription start site region 30185
Tssr30186 3 90265955 to 90265967 12 + TSS region transcription start site region 30186
Tssr34203 3 90266393 to 90266397 4 - TSS region transcription start site region 34203
Tssr30187 3 90266492 to 90266501 9 + TSS region transcription start site region 30187
Tssr30188 3 90266507 to 90266566 59 + TSS region transcription start site region 30188
Mir7012 3 90270149 to 90270212 63 + miRNA gene microRNA 7012
Cpgi13457 3 90273760 to 90274202 442 CpG island CpG island 13457
8430422J01Rik 3 90289990 to 90290727 737 unclassified gene RIKEN cDNA 8430422J01 gene
4930537H20Rik 3 90292301 to 90293983 1682 - antisense lncRNA gene RIKEN cDNA 4930537H20 gene
Cpgi13458 3 90292725 to 90294108 1383 CpG island CpG island 13458
Tssr34204 3 90292776 to 90292782 6 - TSS region transcription start site region 34204
Tssr34205 3 90292865 to 90292876 11 - TSS region transcription start site region 34205
Tssr30189 3 90293163 to 90293253 90 + TSS region transcription start site region 30189
Gatad2b 3 90293285 to 90363405 70120 + protein coding gene GATA zinc finger domain containing 2B
Tssr30190 3 90293295 to 90293311 16 + TSS region transcription start site region 30190
Tssr30191 3 90293353 to 90293380 27 + TSS region transcription start site region 30191
Tssr30192 3 90294081 to 90294090 9 + TSS region transcription start site region 30192
Tssr30193 3 90294092 to 90294104 12 + TSS region transcription start site region 30193
Gm45477 3 90311518 to 90317015 5497 + unclassified gene predicted gene 45477
Gm45354 3 90335395 to 90337951 2556 + unclassified gene predicted gene 45354
Tssr30194 3 90357988 to 90358011 23 + TSS region transcription start site region 30194
Tssr30195 3 90359338 to 90359352 14 + TSS region transcription start site region 30195
Tssr30196 3 90359492 to 90359508 16 + TSS region transcription start site region 30196
Tssr30197 3 90359591 to 90359610 19 + TSS region transcription start site region 30197
Tssr30198 3 90359626 to 90359639 13 + TSS region transcription start site region 30198
D3Mit232 3 90359629 to 90359778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 232
Tssr30199 3 90363089 to 90363094 5 + TSS region transcription start site region 30199
Tssr30200 3 90363160 to 90363164 4 + TSS region transcription start site region 30200
Slc27a3 3 90385239 to 90389938 4699 - protein coding gene solute carrier family 27 (fatty acid transporter), member 3
Cpgi13459 3 90388737 to 90390342 1605 CpG island CpG island 13459
Tssr34206 3 90389281 to 90389319 38 - TSS region transcription start site region 34206
Tssr34207 3 90389849 to 90389862 13 - TSS region transcription start site region 34207
Tssr34208 3 90389884 to 90389924 40 - TSS region transcription start site region 34208
Tssr34209 3 90389936 to 90389958 22 - TSS region transcription start site region 34209
Tssr34210 3 90389963 to 90389976 13 - TSS region transcription start site region 34210
Ints3 3 90391388 to 90433622 42234 - protein coding gene integrator complex subunit 3
Tssr34211 3 90433014 to 90433025 11 - TSS region transcription start site region 34211
Cpgi13460 3 90433061 to 90434007 946 CpG island CpG island 13460
Tssr34212 3 90433464 to 90433499 35 - TSS region transcription start site region 34212
Tssr34213 3 90433523 to 90433534 11 - TSS region transcription start site region 34213
Tssr34214 3 90433553 to 90433565 12 - TSS region transcription start site region 34214
Tssr34215 3 90433582 to 90433600 18 - TSS region transcription start site region 34215
Tssr34216 3 90433603 to 90433619 16 - TSS region transcription start site region 34216
Tssr30201 3 90433791 to 90433820 29 + TSS region transcription start site region 30201
Npr1 3 90450591 to 90465866 15275 - protein coding gene natriuretic peptide receptor 1
Tssr30202 3 90450953 to 90450967 14 + TSS region transcription start site region 30202
Tssr34217 3 90451386 to 90451395 9 - TSS region transcription start site region 34217
Tssr34218 3 90451409 to 90451484 75 - TSS region transcription start site region 34218
Gm16048 3 90451583 to 90457095 5512 + antisense lncRNA gene predicted gene 16048
Cpgi13461 3 90455054 to 90455231 177 CpG island CpG island 13461
Tssr34219 3 90455089 to 90455112 23 - TSS region transcription start site region 34219
Cpgi13462 3 90464535 to 90466386 1851 CpG island CpG island 13462
Tssr34220 3 90464539 to 90464613 74 - TSS region transcription start site region 34220
Tssr34221 3 90464630 to 90464640 10 - TSS region transcription start site region 34221
Tssr34222 3 90464655 to 90464663 8 - TSS region transcription start site region 34222
Tssr34223 3 90464665 to 90464676 11 - TSS region transcription start site region 34223
Tssr30203 3 90464713 to 90464726 13 + TSS region transcription start site region 30203
Tssr34224 3 90465610 to 90465620 10 - TSS region transcription start site region 34224
Tssr34225 3 90465793 to 90465796 3 - TSS region transcription start site region 34225
Tssr34226 3 90465814 to 90465819 5 - TSS region transcription start site region 34226
Tssr34227 3 90465832 to 90465846 14 - TSS region transcription start site region 34227
Tssr34228 3 90465858 to 90465874 16 - TSS region transcription start site region 34228
Tssr30204 3 90466085 to 90466090 5 + TSS region transcription start site region 30204
Tssr34229 3 90466329 to 90466358 29 - TSS region transcription start site region 34229
Tssr34230 3 90466362 to 90466404 42 - TSS region transcription start site region 34230
Gm43595 3 90468898 to 90470959 2061 - pseudogene predicted gene 43595
Cpgi13463 3 90475845 to 90476543 698 CpG island CpG island 13463
n-TMcat11 3 90475860 to 90475931 71 - tRNA gene nuclear encoded tRNA methionine 11 (anticodon CAT)
Tssr30205 3 90476121 to 90476220 99 + TSS region transcription start site region 30205
Ilf2 3 90476201 to 90488379 12178 + protein coding gene interleukin enhancer binding factor 2
Tssr30206 3 90484531 to 90484539 8 + TSS region transcription start site region 30206
Tssr944 3 90487933 to 90487937 4 + TSS region transcription start site region 944
Snapin 3 90488026 to 90491013 2987 - protein coding gene SNAP-associated protein
Tssr34231 3 90489143 to 90489157 14 - TSS region transcription start site region 34231
Tssr34232 3 90490717 to 90490767 50 - TSS region transcription start site region 34232
Cpgi13464 3 90490752 to 90491182 430 CpG island CpG island 13464
Tssr34233 3 90490782 to 90490790 8 - TSS region transcription start site region 34233
Tssr34234 3 90490975 to 90491038 63 - TSS region transcription start site region 34234
Chtop 3 90498956 to 90509498 10542 - protein coding gene chromatin target of PRMT1
Tssr34235 3 90506370 to 90506381 11 - TSS region transcription start site region 34235
Tssr34236 3 90508059 to 90508063 4 - TSS region transcription start site region 34236
Tssr34237 3 90508727 to 90508731 4 - TSS region transcription start site region 34237
Cpgi13465 3 90508761 to 90509769 1008 CpG island CpG island 13465
Tssr30207 3 90509077 to 90509105 28 + TSS region transcription start site region 30207
Tssr34238 3 90509456 to 90509506 50 - TSS region transcription start site region 34238
Tssr34239 3 90509517 to 90509528 11 - TSS region transcription start site region 34239
Tssr30208 3 90509640 to 90509686 46 + TSS region transcription start site region 30208
S100a1 3 90511034 to 90514330 3296 - protein coding gene S100 calcium binding protein A1
Tssr34240 3 90511133 to 90511174 41 - TSS region transcription start site region 34240
Tssr34241 3 90512020 to 90512066 46 - TSS region transcription start site region 34241
Cpgi13466 3 90514184 to 90514344 160 CpG island CpG island 13466
Tssr34242 3 90514250 to 90514334 84 - TSS region transcription start site region 34242
Tssr34243 3 90514356 to 90514366 10 - TSS region transcription start site region 34243
Tssr34244 3 90514370 to 90514379 9 - TSS region transcription start site region 34244
Tssr34245 3 90514405 to 90514420 15 - TSS region transcription start site region 34245
S100a13 3 90514435 to 90524581 10146 + protein coding gene S100 calcium binding protein A13
Tssr30209 3 90514918 to 90514976 58 + TSS region transcription start site region 30209
Tssr30210 3 90514984 to 90514998 14 + TSS region transcription start site region 30210
Tssr30211 3 90526774 to 90526779 5 + TSS region transcription start site region 30211
Tssr30212 3 90526825 to 90526832 7 + TSS region transcription start site region 30212
Tssr30213 3 90526856 to 90526859 3 + TSS region transcription start site region 30213
S100a14 3 90526856 to 90528837 1981 + protein coding gene S100 calcium binding protein A14
Tssr30214 3 90526861 to 90526881 20 + TSS region transcription start site region 30214
Tssr30215 3 90527142 to 90527176 34 + TSS region transcription start site region 30215
Tssr30216 3 90527739 to 90527753 14 + TSS region transcription start site region 30216
Tssr30217 3 90537230 to 90537241 11 + TSS region transcription start site region 30217
Tssr30218 3 90537242 to 90537270 28 + TSS region transcription start site region 30218
S100a16 3 90537257 to 90543151 5894 + protein coding gene S100 calcium binding protein A16
Tssr30219 3 90537291 to 90537304 13 + TSS region transcription start site region 30219
Tssr30220 3 90537306 to 90537326 20 + TSS region transcription start site region 30220
Tssr30221 3 90537333 to 90537386 53 + TSS region transcription start site region 30221
Tssr30222 3 90539645 to 90539660 15 + TSS region transcription start site region 30222
Tssr30223 3 90539675 to 90539691 16 + TSS region transcription start site region 30223
Tssr30224 3 90541155 to 90541173 18 + TSS region transcription start site region 30224
Tssr30225 3 90541177 to 90541186 9 + TSS region transcription start site region 30225
Tssr30226 3 90541189 to 90541213 24 + TSS region transcription start site region 30226
Tssr30227 3 90541217 to 90541241 24 + TSS region transcription start site region 30227
Tssr30228 3 90541258 to 90541276 18 + TSS region transcription start site region 30228
Gm24593 3 90548619 to 90548724 105 + snRNA gene predicted gene, 24593
Tssr30229 3 90560317 to 90560332 15 + TSS region transcription start site region 30229
Gm23464 3 90560556 to 90560702 146 - snRNA gene predicted gene, 23464
S100a3 3 90560578 to 90602702 42124 + protein coding gene S100 calcium binding protein A3
Cpgi13467 3 90586945 to 90587222 277 CpG island CpG island 13467
Tssr30230 3 90587255 to 90587271 16 + TSS region transcription start site region 30230
Tssr945 3 90587275 to 90587290 15 + TSS region transcription start site region 945
Tssr30231 3 90588536 to 90588550 14 + TSS region transcription start site region 30231
Tssr30232 3 90589707 to 90589717 10 + TSS region transcription start site region 30232
S100a2 3 90590247 to 90591508 1261 + protein coding gene S100 calcium binding protein A2
Tssr30233 3 90600203 to 90600219 16 + TSS region transcription start site region 30233
Tssr30234 3 90600237 to 90600247 10 + TSS region transcription start site region 30234
Tssr30235 3 90601773 to 90601809 36 + TSS region transcription start site region 30235
Gm42674 3 90601904 to 90605885 3981 + protein coding gene predicted gene 42674
D3Mit28.1 3 90603728 to 90603900 172 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28.1
Tssr30236 3 90603767 to 90603771 4 + TSS region transcription start site region 30236
S100a4 3 90603771 to 90606045 2274 + protein coding gene S100 calcium binding protein A4
D3Mit28 3 90603910 to 90604057 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 28