Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89765919-90765938

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365 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hsh 3 87263147 to 90359778 3096631 heritable phenotypic marker hind shaker
4632404H12Rik 3 89767511 to 89773240 5729 - lincRNA gene RIKEN cDNA 4632404H12 gene
Cpgi13443 3 89772617 to 89774424 1807 CpG island CpG island 13443
Tssr34153 3 89773221 to 89773279 58 - TSS region transcription start site region 34153
Tssr30135 3 89773343 to 89773394 51 + TSS region transcription start site region 30135
Tssr30136 3 89773562 to 89773642 80 + TSS region transcription start site region 30136
Ube2q1 3 89773616 to 89784000 10384 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 1
Tssr30137 3 89782273 to 89782316 43 + TSS region transcription start site region 30137
Tssr30138 3 89799353 to 89799364 11 + TSS region transcription start site region 30138
Tssr30139 3 89820173 to 89820197 24 + TSS region transcription start site region 30139
Gm8969 3 89820998 to 89821523 525 + pseudogene predicted gene 8969
Cpgi13444 3 89830669 to 89832127 1458 CpG island CpG island 13444
Tssr30140 3 89831352 to 89831384 32 + TSS region transcription start site region 30140
She 3 89831370 to 89858834 27464 + protein coding gene src homology 2 domain-containing transforming protein E
Tssr30141 3 89831395 to 89831406 11 + TSS region transcription start site region 30141
D3Mit341 3 89838121 to 89838245 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 341
Tssr30142 3 89864395 to 89864411 16 + TSS region transcription start site region 30142
Il6ra 3 89869324 to 89913196 43872 - protein coding gene interleukin 6 receptor, alpha
Tssr34154 3 89870177 to 89870194 17 - TSS region transcription start site region 34154
Tssr34155 3 89870201 to 89870211 10 - TSS region transcription start site region 34155
Tssr34156 3 89870217 to 89870226 9 - TSS region transcription start site region 34156
Tssr34157 3 89870228 to 89870244 16 - TSS region transcription start site region 34157
Tssr34158 3 89871053 to 89871067 14 - TSS region transcription start site region 34158
Tssr34159 3 89871745 to 89871752 7 - TSS region transcription start site region 34159
Gm46811 3 89872076 to 89890235 18159 + lncRNA gene predicted gene, 46811
Tssr34160 3 89891466 to 89891478 12 - TSS region transcription start site region 34160
Tssr34161 3 89904373 to 89904382 9 - TSS region transcription start site region 34161
Tssr34162 3 89904395 to 89904410 15 - TSS region transcription start site region 34162
Tssr34163 3 89904416 to 89904427 11 - TSS region transcription start site region 34163
Tssr34164 3 89904507 to 89904518 11 - TSS region transcription start site region 34164
Tssr30143 3 89911393 to 89911406 13 + TSS region transcription start site region 30143
Cpgi13445 3 89912618 to 89913519 901 CpG island CpG island 13445
Tssr30144 3 89912892 to 89912898 6 + TSS region transcription start site region 30144
Gm42809 3 89912916 to 89914053 1137 + antisense lncRNA gene predicted gene 42809
Tssr34165 3 89913102 to 89913111 9 - TSS region transcription start site region 34165
Tssr34166 3 89913144 to 89913172 28 - TSS region transcription start site region 34166
Tssr34167 3 89913186 to 89913202 16 - TSS region transcription start site region 34167
Atp8b2 3 89939481 to 89963332 23851 - protein coding gene ATPase, class I, type 8B, member 2
Tssr34168 3 89959118 to 89959130 12 - TSS region transcription start site region 34168
Tssr34169 3 89959146 to 89959156 10 - TSS region transcription start site region 34169
Cpgi13446 3 89960249 to 89960912 663 CpG island CpG island 13446
Tssr34170 3 89960540 to 89960557 17 - TSS region transcription start site region 34170
Tssr34171 3 89960562 to 89960617 55 - TSS region transcription start site region 34171
Cpgi13447 3 89962792 to 89963871 1079 CpG island CpG island 13447
Tssr34172 3 89963273 to 89963286 13 - TSS region transcription start site region 34172
Tssr34173 3 89963304 to 89963355 51 - TSS region transcription start site region 34173
Tssr30145 3 89963428 to 89963462 34 + TSS region transcription start site region 30145
Aqp10-ps 3 89964709 to 89968658 3949 - pseudogene aquaporin 10, pseudogene
Gm24046 3 89967999 to 89968163 164 - snRNA gene predicted gene, 24046
Hax1 3 89995446 to 89998716 3270 - protein coding gene HCLS1 associated X-1
Tssr34174 3 89998243 to 89998251 8 - TSS region transcription start site region 34174
Cpgi13448 3 89998518 to 89998881 363 CpG island CpG island 13448
Tssr34175 3 89998656 to 89998704 48 - TSS region transcription start site region 34175
Gm19710 3 89998760 to 90001325 2565 + lincRNA gene predicted gene, 19710
Ubap2l 3 90000140 to 90052628 52488 - protein coding gene ubiquitin-associated protein 2-like
Tssr34176 3 90000528 to 90000547 19 - TSS region transcription start site region 34176
Tssr34177 3 90000553 to 90000581 28 - TSS region transcription start site region 34177
Tssr34178 3 90000794 to 90000804 10 - TSS region transcription start site region 34178
Tssr30146 3 90000836 to 90000846 10 + TSS region transcription start site region 30146
Tssr34179 3 90002265 to 90002290 25 - TSS region transcription start site region 34179
Tssr34180 3 90009288 to 90009306 18 - TSS region transcription start site region 34180
Gm24608 3 90010595 to 90010730 135 - snoRNA gene predicted gene, 24608
Mir7669 3 90011153 to 90011210 57 - miRNA gene microRNA 7669
Tssr34181 3 90014427 to 90014432 5 - TSS region transcription start site region 34181
Tssr34182 3 90016819 to 90016831 12 - TSS region transcription start site region 34182
Tssr34183 3 90017609 to 90017613 4 - TSS region transcription start site region 34183
Tssr34184 3 90018442 to 90018480 38 - TSS region transcription start site region 34184
Tssr34185 3 90019197 to 90019212 15 - TSS region transcription start site region 34185
Tssr34186 3 90019232 to 90019244 12 - TSS region transcription start site region 34186
Tssr34187 3 90020936 to 90020965 29 - TSS region transcription start site region 34187
Tssr34188 3 90045035 to 90045044 9 - TSS region transcription start site region 34188
Tssr30147 3 90051537 to 90051565 28 + TSS region transcription start site region 30147
Tssr30148 3 90051630 to 90051636 6 + TSS region transcription start site region 30148
4933434E20Rik 3 90051636 to 90063341 11705 + protein coding gene RIKEN cDNA 4933434E20 gene
Cpgi13449 3 90051787 to 90053417 1630 CpG island CpG island 13449
Tssr34189 3 90052432 to 90052459 27 - TSS region transcription start site region 34189
Tssr34190 3 90052463 to 90052521 58 - TSS region transcription start site region 34190
Tssr34191 3 90052608 to 90052627 19 - TSS region transcription start site region 34191
Tssr30149 3 90052824 to 90052857 33 + TSS region transcription start site region 30149
Tssr30150 3 90052921 to 90052936 15 + TSS region transcription start site region 30150
Gm16540 3 90057259 to 90058380 1121 + sense intronic lncRNA gene predicted gene 16540
Tssr30151 3 90062781 to 90062836 55 + TSS region transcription start site region 30151
1700094D03Rik 3 90062796 to 90068347 5551 + protein coding gene RIKEN cDNA 1700094D03 gene
Tssr30152 3 90068160 to 90068167 7 + TSS region transcription start site region 30152
Tssr30153 3 90069067 to 90069073 6 + TSS region transcription start site region 30153
Mir190b 3 90070020 to 90070099 79 + miRNA gene microRNA 190b
Tssr30154 3 90072641 to 90072657 16 + TSS region transcription start site region 30154
Tpm3 3 90072651 to 90100902 28251 + protein coding gene tropomyosin 3, gamma
Cpgi13450 3 90079272 to 90080569 1297 CpG island CpG island 13450
Tssr30155 3 90079524 to 90079537 13 + TSS region transcription start site region 30155
Tssr30156 3 90079546 to 90079565 19 + TSS region transcription start site region 30156
Tssr30157 3 90079619 to 90079664 45 + TSS region transcription start site region 30157
Tssr30158 3 90080485 to 90080498 13 + TSS region transcription start site region 30158
D3Ertd34e 3 90082358 to 90082579 221 DNA segment DNA segment, Chr 3, ERATO Doi 34, expressed
Tssr30159 3 90086342 to 90086353 11 + TSS region transcription start site region 30159
Tssr30160 3 90087415 to 90087439 24 + TSS region transcription start site region 30160
Tssr30161 3 90088093 to 90088097 4 + TSS region transcription start site region 30161
Tssr30162 3 90104128 to 90104143 15 + TSS region transcription start site region 30162
Nup210l 3 90104132 to 90212048 107916 + protein coding gene nucleoporin 210-like
Tssr30163 3 90104147 to 90104152 5 + TSS region transcription start site region 30163
Tssr30164 3 90104154 to 90104165 11 + TSS region transcription start site region 30164
Gm34865 3 90124651 to 90127116 2465 + lncRNA gene predicted gene, 34865
Gm23723 3 90126535 to 90126666 131 + snoRNA gene predicted gene, 23723
Gm43712 3 90126767 to 90127057 290 + pseudogene predicted gene 43712
Gm24185 3 90198682 to 90198786 104 + snRNA gene predicted gene, 24185
Rps27 3 90212667 to 90213648 981 - protein coding gene ribosomal protein S27
Cpgi13451 3 90213313 to 90213944 631 CpG island CpG island 13451
Tssr34192 3 90213577 to 90213630 53 - TSS region transcription start site region 34192
Tssr34193 3 90213636 to 90213670 34 - TSS region transcription start site region 34193
Rab13 3 90213715 to 90226387 12672 + protein coding gene RAB13, member RAS oncogene family
Tssr30165 3 90220747 to 90220773 26 + TSS region transcription start site region 30165
Tssr30166 3 90220783 to 90220830 47 + TSS region transcription start site region 30166
Tssr30167 3 90220856 to 90220867 11 + TSS region transcription start site region 30167
Tssr30168 3 90220871 to 90220877 6 + TSS region transcription start site region 30168
Tssr30169 3 90220881 to 90220897 16 + TSS region transcription start site region 30169
Tssr943 3 90231075 to 90231081 6 + TSS region transcription start site region 943
Cpgi13452 3 90231386 to 90232263 877 CpG island CpG island 13452
Tssr30170 3 90231588 to 90231663 75 + TSS region transcription start site region 30170
Jtb 3 90231597 to 90235838 4241 + protein coding gene jumping translocation breakpoint
Tssr30171 3 90231665 to 90231708 43 + TSS region transcription start site region 30171
Creb3l4 3 90237500 to 90243512 6012 - protein coding gene cAMP responsive element binding protein 3-like 4
Tssr34194 3 90238790 to 90238805 15 - TSS region transcription start site region 34194
Tssr34195 3 90238825 to 90238845 20 - TSS region transcription start site region 34195
Tssr34196 3 90242492 to 90242554 62 - TSS region transcription start site region 34196
Tssr34197 3 90242556 to 90242567 11 - TSS region transcription start site region 34197
Cpgi13453 3 90242744 to 90242907 163 CpG island CpG island 13453
Tssr34198 3 90243061 to 90243072 11 - TSS region transcription start site region 34198
Tssr34199 3 90243073 to 90243109 36 - TSS region transcription start site region 34199
Cpgi13454 3 90247889 to 90248552 663 CpG island CpG island 13454
Slc39a1 3 90248192 to 90253613 5421 + protein coding gene solute carrier family 39 (zinc transporter), member 1
Tssr30172 3 90248195 to 90248228 33 + TSS region transcription start site region 30172
Tssr30173 3 90248522 to 90248533 11 + TSS region transcription start site region 30173
Tssr34200 3 90248764 to 90248776 12 - TSS region transcription start site region 34200
Tssr30174 3 90248831 to 90248842 11 + TSS region transcription start site region 30174
Tssr30175 3 90248857 to 90248870 13 + TSS region transcription start site region 30175
Tssr30176 3 90248885 to 90248932 47 + TSS region transcription start site region 30176
Tssr30177 3 90248962 to 90248971 9 + TSS region transcription start site region 30177
Tssr30178 3 90253122 to 90253124 2 + TSS region transcription start site region 30178
Cpgi13455 3 90253949 to 90254836 887 CpG island CpG island 13455
Tssr34201 3 90254078 to 90254092 14 - TSS region transcription start site region 34201
Crtc2 3 90254163 to 90264125 9962 + protein coding gene CREB regulated transcription coactivator 2
Tssr30179 3 90254241 to 90254252 11 + TSS region transcription start site region 30179
Tssr30180 3 90254259 to 90254332 73 + TSS region transcription start site region 30180
Tssr30181 3 90254344 to 90254363 19 + TSS region transcription start site region 30181
Tssr30182 3 90260282 to 90260285 3 + TSS region transcription start site region 30182
Tssr30183 3 90260961 to 90260975 14 + TSS region transcription start site region 30183
Cpgi13456 3 90264920 to 90266195 1275 CpG island CpG island 13456
Tssr30184 3 90264967 to 90264988 21 + TSS region transcription start site region 30184
Dennd4b 3 90265185 to 90280669 15484 + protein coding gene DENN/MADD domain containing 4B
Tssr34202 3 90265508 to 90265575 67 - TSS region transcription start site region 34202
Tssr30185 3 90265919 to 90265938 19 + TSS region transcription start site region 30185
Tssr30186 3 90265955 to 90265967 12 + TSS region transcription start site region 30186
Tssr34203 3 90266393 to 90266397 4 - TSS region transcription start site region 34203
Tssr30187 3 90266492 to 90266501 9 + TSS region transcription start site region 30187
Tssr30188 3 90266507 to 90266566 59 + TSS region transcription start site region 30188
Mir7012 3 90270149 to 90270212 63 + miRNA gene microRNA 7012
Cpgi13457 3 90273760 to 90274202 442 CpG island CpG island 13457
8430422J01Rik 3 90289990 to 90290727 737 unclassified gene RIKEN cDNA 8430422J01 gene
4930537H20Rik 3 90292301 to 90293983 1682 - antisense lncRNA gene RIKEN cDNA 4930537H20 gene
Cpgi13458 3 90292725 to 90294108 1383 CpG island CpG island 13458
Tssr34204 3 90292776 to 90292782 6 - TSS region transcription start site region 34204
Tssr34205 3 90292865 to 90292876 11 - TSS region transcription start site region 34205
Tssr30189 3 90293163 to 90293253 90 + TSS region transcription start site region 30189
Gatad2b 3 90293285 to 90363405 70120 + protein coding gene GATA zinc finger domain containing 2B
Tssr30190 3 90293295 to 90293311 16 + TSS region transcription start site region 30190
Tssr30191 3 90293353 to 90293380 27 + TSS region transcription start site region 30191
Tssr30192 3 90294081 to 90294090 9 + TSS region transcription start site region 30192
Tssr30193 3 90294092 to 90294104 12 + TSS region transcription start site region 30193
Gm45477 3 90311518 to 90317015 5497 + unclassified gene predicted gene 45477
Gm45354 3 90335395 to 90337951 2556 + unclassified gene predicted gene 45354
Tssr30194 3 90357988 to 90358011 23 + TSS region transcription start site region 30194
Tssr30195 3 90359338 to 90359352 14 + TSS region transcription start site region 30195
Tssr30196 3 90359492 to 90359508 16 + TSS region transcription start site region 30196
Tssr30197 3 90359591 to 90359610 19 + TSS region transcription start site region 30197
Tssr30198 3 90359626 to 90359639 13 + TSS region transcription start site region 30198
D3Mit232 3 90359629 to 90359778 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 232
Tssr30199 3 90363089 to 90363094 5 + TSS region transcription start site region 30199
Tssr30200 3 90363160 to 90363164 4 + TSS region transcription start site region 30200
Slc27a3 3 90385239 to 90389938 4699 - protein coding gene solute carrier family 27 (fatty acid transporter), member 3
Cpgi13459 3 90388737 to 90390342 1605 CpG island CpG island 13459
Tssr34206 3 90389281 to 90389319 38 - TSS region transcription start site region 34206
Tssr34207 3 90389849 to 90389862 13 - TSS region transcription start site region 34207
Tssr34208 3 90389884 to 90389924 40 - TSS region transcription start site region 34208
Tssr34209 3 90389936 to 90389958 22 - TSS region transcription start site region 34209
Tssr34210 3 90389963 to 90389976 13 - TSS region transcription start site region 34210
Ints3 3 90391388 to 90433622 42234 - protein coding gene integrator complex subunit 3
Tssr34211 3 90433014 to 90433025 11 - TSS region transcription start site region 34211
Cpgi13460 3 90433061 to 90434007 946 CpG island CpG island 13460
Tssr34212 3 90433464 to 90433499 35 - TSS region transcription start site region 34212
Tssr34213 3 90433523 to 90433534 11 - TSS region transcription start site region 34213
Tssr34214 3 90433553 to 90433565 12 - TSS region transcription start site region 34214
Tssr34215 3 90433582 to 90433600 18 - TSS region transcription start site region 34215
Tssr34216 3 90433603 to 90433619 16 - TSS region transcription start site region 34216
Tssr30201 3 90433791 to 90433820 29 + TSS region transcription start site region 30201
Npr1 3 90450591 to 90465866 15275 - protein coding gene natriuretic peptide receptor 1
Tssr30202 3 90450953 to 90450967 14 + TSS region transcription start site region 30202
Tssr34217 3 90451386 to 90451395 9 - TSS region transcription start site region 34217
Tssr34218 3 90451409 to 90451484 75 - TSS region transcription start site region 34218
Gm16048 3 90451583 to 90457095 5512 + antisense lncRNA gene predicted gene 16048
Cpgi13461 3 90455054 to 90455231 177 CpG island CpG island 13461