Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89717999-90218163

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adar 3 89715022 to 89753446 38424 + protein coding gene adenosine deaminase, RNA-specific
Cpgi13440 3 89730457 to 89730937 480 CpG island CpG island 13440
Tssr34148 3 89730551 to 89730562 11 - TSS region transcription start site region 34148
Tssr30132 3 89730735 to 89730786 51 + TSS region transcription start site region 30132
Tssr34149 3 89732315 to 89732326 11 - TSS region transcription start site region 34149
Tssr30133 3 89735689 to 89735716 27 + TSS region transcription start site region 30133
Tssr30134 3 89735789 to 89735805 16 + TSS region transcription start site region 30134
Chrnb2 3 89753448 to 89764632 11184 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
Cpgi13441 3 89760679 to 89761386 707 CpG island CpG island 13441
Cpgi13442 3 89764223 to 89764735 512 CpG island CpG island 13442
Tssr34150 3 89764432 to 89764443 11 - TSS region transcription start site region 34150
Tssr34151 3 89764523 to 89764528 5 - TSS region transcription start site region 34151
Tssr34152 3 89764581 to 89764646 65 - TSS region transcription start site region 34152
4632404H12Rik 3 89767511 to 89773240 5729 - lincRNA gene RIKEN cDNA 4632404H12 gene
Cpgi13443 3 89772617 to 89774424 1807 CpG island CpG island 13443
Tssr34153 3 89773221 to 89773279 58 - TSS region transcription start site region 34153
Tssr30135 3 89773343 to 89773394 51 + TSS region transcription start site region 30135
Tssr30136 3 89773562 to 89773642 80 + TSS region transcription start site region 30136
Ube2q1 3 89773616 to 89784000 10384 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 1
Tssr30137 3 89782273 to 89782316 43 + TSS region transcription start site region 30137
Tssr30138 3 89799353 to 89799364 11 + TSS region transcription start site region 30138
Tssr30139 3 89820173 to 89820197 24 + TSS region transcription start site region 30139
Gm8969 3 89820998 to 89821523 525 + pseudogene predicted gene 8969
Cpgi13444 3 89830669 to 89832127 1458 CpG island CpG island 13444
Tssr30140 3 89831352 to 89831384 32 + TSS region transcription start site region 30140
She 3 89831370 to 89858834 27464 + protein coding gene src homology 2 domain-containing transforming protein E
Tssr30141 3 89831395 to 89831406 11 + TSS region transcription start site region 30141
D3Mit341 3 89838121 to 89838245 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 341
Tssr30142 3 89864395 to 89864411 16 + TSS region transcription start site region 30142
Il6ra 3 89869324 to 89913196 43872 - protein coding gene interleukin 6 receptor, alpha
Tssr34154 3 89870177 to 89870194 17 - TSS region transcription start site region 34154
Tssr34155 3 89870201 to 89870211 10 - TSS region transcription start site region 34155
Tssr34156 3 89870217 to 89870226 9 - TSS region transcription start site region 34156
Tssr34157 3 89870228 to 89870244 16 - TSS region transcription start site region 34157
Tssr34158 3 89871053 to 89871067 14 - TSS region transcription start site region 34158
Tssr34159 3 89871745 to 89871752 7 - TSS region transcription start site region 34159
Gm46811 3 89872076 to 89890235 18159 + lncRNA gene predicted gene, 46811
Tssr34160 3 89891466 to 89891478 12 - TSS region transcription start site region 34160
Tssr34161 3 89904373 to 89904382 9 - TSS region transcription start site region 34161
Tssr34162 3 89904395 to 89904410 15 - TSS region transcription start site region 34162
Tssr34163 3 89904416 to 89904427 11 - TSS region transcription start site region 34163
Tssr34164 3 89904507 to 89904518 11 - TSS region transcription start site region 34164
Tssr30143 3 89911393 to 89911406 13 + TSS region transcription start site region 30143
Cpgi13445 3 89912618 to 89913519 901 CpG island CpG island 13445
Tssr30144 3 89912892 to 89912898 6 + TSS region transcription start site region 30144
Gm42809 3 89912916 to 89914053 1137 + antisense lncRNA gene predicted gene 42809
Tssr34165 3 89913102 to 89913111 9 - TSS region transcription start site region 34165
Tssr34166 3 89913144 to 89913172 28 - TSS region transcription start site region 34166
Tssr34167 3 89913186 to 89913202 16 - TSS region transcription start site region 34167
Atp8b2 3 89939481 to 89963332 23851 - protein coding gene ATPase, class I, type 8B, member 2
Tssr34168 3 89959118 to 89959130 12 - TSS region transcription start site region 34168
Tssr34169 3 89959146 to 89959156 10 - TSS region transcription start site region 34169
Cpgi13446 3 89960249 to 89960912 663 CpG island CpG island 13446
Tssr34170 3 89960540 to 89960557 17 - TSS region transcription start site region 34170
Tssr34171 3 89960562 to 89960617 55 - TSS region transcription start site region 34171
Cpgi13447 3 89962792 to 89963871 1079 CpG island CpG island 13447
Tssr34172 3 89963273 to 89963286 13 - TSS region transcription start site region 34172
Tssr34173 3 89963304 to 89963355 51 - TSS region transcription start site region 34173
Tssr30145 3 89963428 to 89963462 34 + TSS region transcription start site region 30145
Aqp10-ps 3 89964709 to 89968658 3949 - pseudogene aquaporin 10, pseudogene
Gm24046 3 89967999 to 89968163 164 - snRNA gene predicted gene, 24046
Hax1 3 89995446 to 89998716 3270 - protein coding gene HCLS1 associated X-1
Tssr34174 3 89998243 to 89998251 8 - TSS region transcription start site region 34174
Cpgi13448 3 89998518 to 89998881 363 CpG island CpG island 13448
Tssr34175 3 89998656 to 89998704 48 - TSS region transcription start site region 34175
Gm19710 3 89998760 to 90001325 2565 + lincRNA gene predicted gene, 19710
Ubap2l 3 90000140 to 90052628 52488 - protein coding gene ubiquitin-associated protein 2-like
Tssr34176 3 90000528 to 90000547 19 - TSS region transcription start site region 34176
Tssr34177 3 90000553 to 90000581 28 - TSS region transcription start site region 34177
Tssr34178 3 90000794 to 90000804 10 - TSS region transcription start site region 34178
Tssr30146 3 90000836 to 90000846 10 + TSS region transcription start site region 30146
Tssr34179 3 90002265 to 90002290 25 - TSS region transcription start site region 34179
Tssr34180 3 90009288 to 90009306 18 - TSS region transcription start site region 34180
Gm24608 3 90010595 to 90010730 135 - snoRNA gene predicted gene, 24608
Mir7669 3 90011153 to 90011210 57 - miRNA gene microRNA 7669
Tssr34181 3 90014427 to 90014432 5 - TSS region transcription start site region 34181
Tssr34182 3 90016819 to 90016831 12 - TSS region transcription start site region 34182
Tssr34183 3 90017609 to 90017613 4 - TSS region transcription start site region 34183
Tssr34184 3 90018442 to 90018480 38 - TSS region transcription start site region 34184
Tssr34185 3 90019197 to 90019212 15 - TSS region transcription start site region 34185
Tssr34186 3 90019232 to 90019244 12 - TSS region transcription start site region 34186
Tssr34187 3 90020936 to 90020965 29 - TSS region transcription start site region 34187
Tssr34188 3 90045035 to 90045044 9 - TSS region transcription start site region 34188
Tssr30147 3 90051537 to 90051565 28 + TSS region transcription start site region 30147
Tssr30148 3 90051630 to 90051636 6 + TSS region transcription start site region 30148
4933434E20Rik 3 90051636 to 90063341 11705 + protein coding gene RIKEN cDNA 4933434E20 gene
Cpgi13449 3 90051787 to 90053417 1630 CpG island CpG island 13449
Tssr34189 3 90052432 to 90052459 27 - TSS region transcription start site region 34189
Tssr34190 3 90052463 to 90052521 58 - TSS region transcription start site region 34190
Tssr34191 3 90052608 to 90052627 19 - TSS region transcription start site region 34191
Tssr30149 3 90052824 to 90052857 33 + TSS region transcription start site region 30149
Tssr30150 3 90052921 to 90052936 15 + TSS region transcription start site region 30150
Gm16540 3 90057259 to 90058380 1121 + sense intronic lncRNA gene predicted gene 16540
Tssr30151 3 90062781 to 90062836 55 + TSS region transcription start site region 30151
1700094D03Rik 3 90062796 to 90068347 5551 + protein coding gene RIKEN cDNA 1700094D03 gene
Tssr30152 3 90068160 to 90068167 7 + TSS region transcription start site region 30152
Tssr30153 3 90069067 to 90069073 6 + TSS region transcription start site region 30153
Mir190b 3 90070020 to 90070099 79 + miRNA gene microRNA 190b
Tssr30154 3 90072641 to 90072657 16 + TSS region transcription start site region 30154
Tpm3 3 90072651 to 90100902 28251 + protein coding gene tropomyosin 3, gamma
Cpgi13450 3 90079272 to 90080569 1297 CpG island CpG island 13450
Tssr30155 3 90079524 to 90079537 13 + TSS region transcription start site region 30155
Tssr30156 3 90079546 to 90079565 19 + TSS region transcription start site region 30156
Tssr30157 3 90079619 to 90079664 45 + TSS region transcription start site region 30157
Tssr30158 3 90080485 to 90080498 13 + TSS region transcription start site region 30158
D3Ertd34e 3 90082358 to 90082579 221 DNA segment DNA segment, Chr 3, ERATO Doi 34, expressed
Tssr30159 3 90086342 to 90086353 11 + TSS region transcription start site region 30159
Tssr30160 3 90087415 to 90087439 24 + TSS region transcription start site region 30160
Tssr30161 3 90088093 to 90088097 4 + TSS region transcription start site region 30161
Tssr30162 3 90104128 to 90104143 15 + TSS region transcription start site region 30162
Nup210l 3 90104132 to 90212048 107916 + protein coding gene nucleoporin 210-like
Tssr30163 3 90104147 to 90104152 5 + TSS region transcription start site region 30163
Tssr30164 3 90104154 to 90104165 11 + TSS region transcription start site region 30164
Gm34865 3 90124651 to 90127116 2465 + lncRNA gene predicted gene, 34865
Gm23723 3 90126535 to 90126666 131 + snoRNA gene predicted gene, 23723
Gm43712 3 90126767 to 90127057 290 + pseudogene predicted gene 43712
Gm24185 3 90198682 to 90198786 104 + snRNA gene predicted gene, 24185
Rps27 3 90212667 to 90213648 981 - protein coding gene ribosomal protein S27
Cpgi13451 3 90213313 to 90213944 631 CpG island CpG island 13451
Tssr34192 3 90213577 to 90213630 53 - TSS region transcription start site region 34192
Tssr34193 3 90213636 to 90213670 34 - TSS region transcription start site region 34193
Rab13 3 90213715 to 90226387 12672 + protein coding gene RAB13, member RAS oncogene family