Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:89422519-89902552

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shc1 3 89418443 to 89430027 11584 + protein coding gene src homology 2 domain-containing transforming protein C1
Tssr30109 3 89423385 to 89423397 12 + TSS region transcription start site region 30109
Tssr30110 3 89429589 to 89429612 23 + TSS region transcription start site region 30110
Cpgi13432 3 89430026 to 89430913 887 CpG island CpG island 13432
Pygo2 3 89430214 to 89435128 4914 + protein coding gene pygopus 2
Tssr30111 3 89430273 to 89430289 16 + TSS region transcription start site region 30111
Tssr30112 3 89430395 to 89430500 105 + TSS region transcription start site region 30112
Tssr30113 3 89430536 to 89430543 7 + TSS region transcription start site region 30113
Tssr30114 3 89430581 to 89430597 16 + TSS region transcription start site region 30114
Tssr34141 3 89430742 to 89430752 10 - TSS region transcription start site region 34141
Tssr30115 3 89432470 to 89432495 25 + TSS region transcription start site region 30115
Tssr30116 3 89432899 to 89432933 34 + TSS region transcription start site region 30116
Tssr30117 3 89436699 to 89436734 35 + TSS region transcription start site region 30117
Pbxip1 3 89436706 to 89450952 14246 + protein coding gene pre B cell leukemia transcription factor interacting protein 1
Tssr30118 3 89436736 to 89436761 25 + TSS region transcription start site region 30118
Tssr30119 3 89436879 to 89436892 13 + TSS region transcription start site region 30119
Tssr942 3 89437531 to 89437573 42 + TSS region transcription start site region 942
Tssr30120 3 89450385 to 89450404 19 + TSS region transcription start site region 30120
Pmvk 3 89454541 to 89469009 14468 + protein coding gene phosphomevalonate kinase
Tssr34142 3 89455282 to 89455307 25 - TSS region transcription start site region 34142
Tssr34143 3 89458754 to 89458774 20 - TSS region transcription start site region 34143
Tssr30121 3 89459167 to 89459178 11 + TSS region transcription start site region 30121
Tssr30122 3 89459186 to 89459214 28 + TSS region transcription start site region 30122
Cpgi13433 3 89459186 to 89459588 402 CpG island CpG island 13433
Tssr30123 3 89459276 to 89459289 13 + TSS region transcription start site region 30123
Tssr30124 3 89459297 to 89459321 24 + TSS region transcription start site region 30124
Tssr30125 3 89459325 to 89459360 35 + TSS region transcription start site region 30125
Cpgi13434 3 89485243 to 89485421 178 CpG island CpG island 13434
Cpgi13435 3 89519807 to 89520079 272 CpG island CpG island 13435
Tssr30126 3 89520152 to 89520175 23 + TSS region transcription start site region 30126
Kcnn3 3 89520164 to 89672494 152330 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
Cpgi13436 3 89520570 to 89521061 491 CpG island CpG island 13436
Cpgi13437 3 89522085 to 89522251 166 CpG island CpG island 13437
Tssr30127 3 89586371 to 89586373 2 + TSS region transcription start site region 30127
Tssr34144 3 89655140 to 89655170 30 - TSS region transcription start site region 34144
Tssr30128 3 89662519 to 89662552 33 + TSS region transcription start site region 30128
Tssr30129 3 89662681 to 89662716 35 + TSS region transcription start site region 30129
Tssr30130 3 89662717 to 89662728 11 + TSS region transcription start site region 30130
Tssr34145 3 89667249 to 89667260 11 - TSS region transcription start site region 34145
Tssr34146 3 89667280 to 89667287 7 - TSS region transcription start site region 34146
Tssr34147 3 89683181 to 89683189 8 - TSS region transcription start site region 34147
Cpgi13438 3 89688878 to 89689227 349 CpG island CpG island 13438
Cpgi13439 3 89714925 to 89715786 861 CpG island CpG island 13439
Tssr30131 3 89715016 to 89715084 68 + TSS region transcription start site region 30131
Adar 3 89715022 to 89753446 38424 + protein coding gene adenosine deaminase, RNA-specific
Cpgi13440 3 89730457 to 89730937 480 CpG island CpG island 13440
Tssr34148 3 89730551 to 89730562 11 - TSS region transcription start site region 34148
Tssr30132 3 89730735 to 89730786 51 + TSS region transcription start site region 30132
Tssr34149 3 89732315 to 89732326 11 - TSS region transcription start site region 34149
Tssr30133 3 89735689 to 89735716 27 + TSS region transcription start site region 30133
Tssr30134 3 89735789 to 89735805 16 + TSS region transcription start site region 30134
Chrnb2 3 89753448 to 89764632 11184 - protein coding gene cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)
Cpgi13441 3 89760679 to 89761386 707 CpG island CpG island 13441
Cpgi13442 3 89764223 to 89764735 512 CpG island CpG island 13442
Tssr34150 3 89764432 to 89764443 11 - TSS region transcription start site region 34150
Tssr34151 3 89764523 to 89764528 5 - TSS region transcription start site region 34151
Tssr34152 3 89764581 to 89764646 65 - TSS region transcription start site region 34152
4632404H12Rik 3 89767511 to 89773240 5729 - lincRNA gene RIKEN cDNA 4632404H12 gene
Cpgi13443 3 89772617 to 89774424 1807 CpG island CpG island 13443
Tssr34153 3 89773221 to 89773279 58 - TSS region transcription start site region 34153
Tssr30135 3 89773343 to 89773394 51 + TSS region transcription start site region 30135
Tssr30136 3 89773562 to 89773642 80 + TSS region transcription start site region 30136
Ube2q1 3 89773616 to 89784000 10384 + protein coding gene ubiquitin-conjugating enzyme E2Q family member 1
Tssr30137 3 89782273 to 89782316 43 + TSS region transcription start site region 30137
Tssr30138 3 89799353 to 89799364 11 + TSS region transcription start site region 30138
Tssr30139 3 89820173 to 89820197 24 + TSS region transcription start site region 30139
Gm8969 3 89820998 to 89821523 525 + pseudogene predicted gene 8969
Cpgi13444 3 89830669 to 89832127 1458 CpG island CpG island 13444
Tssr30140 3 89831352 to 89831384 32 + TSS region transcription start site region 30140
She 3 89831370 to 89858834 27464 + protein coding gene src homology 2 domain-containing transforming protein E
Tssr30141 3 89831395 to 89831406 11 + TSS region transcription start site region 30141
D3Mit341 3 89838121 to 89838245 124 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 341
Tssr30142 3 89864395 to 89864411 16 + TSS region transcription start site region 30142
Il6ra 3 89869324 to 89913196 43872 - protein coding gene interleukin 6 receptor, alpha
Tssr34154 3 89870177 to 89870194 17 - TSS region transcription start site region 34154
Tssr34155 3 89870201 to 89870211 10 - TSS region transcription start site region 34155
Tssr34156 3 89870217 to 89870226 9 - TSS region transcription start site region 34156
Tssr34157 3 89870228 to 89870244 16 - TSS region transcription start site region 34157
Tssr34158 3 89871053 to 89871067 14 - TSS region transcription start site region 34158
Tssr34159 3 89871745 to 89871752 7 - TSS region transcription start site region 34159
Gm46811 3 89872076 to 89890235 18159 + lncRNA gene predicted gene, 46811
Tssr34160 3 89891466 to 89891478 12 - TSS region transcription start site region 34160